Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 8.5e-176 620.2 298 100.0
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 2.0e-92 343.2 259 68.0
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 7.6e-92 341.3 259 67.6
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 2.2e-91 339.7 259 66.8
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 8.4e-91 337.8 258 67.4
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 1.1e-90 337.4 259 66.0
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 1.4e-90 337.0 259 66.0
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 1.4e-90 337.0 259 66.8
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 1.9e-90 336.7 259 65.6
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 1.9e-90 336.7 259 66.8
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.6e-89 333.6 259 66.0
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.6e-89 333.6 259 65.6
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 2.1e-89 333.2 259 64.9
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.1e-89 333.2 259 66.0
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.7e-89 332.8 259 66.0
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 2.7e-89 332.8 259 65.3
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 4.6e-89 332.0 259 64.1
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 6.0e-89 331.6 259 65.6
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 7.9e-89 331.3 259 66.0
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 7.9e-89 331.3 259 65.3
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 1.0e-88 330.9 259 65.6
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 1.0e-88 330.9 259 63.7
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.3e-88 330.5 259 65.6
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 2.3e-88 329.7 259 64.1
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 3.9e-88 328.9 259 64.9
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 3.9e-88 328.9 259 64.5
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 5.1e-88 328.6 259 64.9
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 5.1e-88 328.6 259 64.9
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 6.7e-88 328.2 259 64.9
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 8.7e-88 327.8 259 64.5
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 1.1e-87 327.4 259 64.1
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 1.1e-87 327.4 259 63.7
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.9e-87 326.6 259 64.5
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 3.3e-87 325.9 259 64.1
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 3.3e-87 325.9 259 64.9
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 4.3e-87 325.5 258 65.5
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 7.4e-87 324.7 259 64.1
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 7.4e-87 324.7 259 64.1
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 9.6e-87 324.3 259 64.9
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 9.6e-87 324.3 259 62.9
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.3e-86 323.9 259 65.6
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 1.6e-86 323.6 259 64.9
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 2.8e-86 322.8 259 63.3
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 3.7e-86 322.4 259 64.5
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 4.8e-86 322.0 260 63.5
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 4.8e-86 322.0 260 63.5
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 4.8e-86 322.0 260 65.4
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 6.3e-86 321.6 260 62.7
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 8.2e-86 321.2 259 62.5
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.1e-85 320.9 259 62.5
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 1.8e-85 320.1 266 62.0
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 1.8e-85 320.1 259 62.5
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 2.4e-85 319.7 259 62.2
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 3.1e-85 319.3 268 60.4
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 3.1e-85 319.3 260 63.5
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 3.1e-85 319.3 259 64.5
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 4.1e-85 318.9 259 62.2
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 4.1e-85 318.9 276 60.9
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 5.3e-85 318.5 259 62.2
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 6.9e-85 318.2 259 62.5
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 1.2e-84 317.4 259 63.3
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 1.5e-84 317.0 259 63.3
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 2.0e-84 316.6 259 63.3
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.0e-83 314.3 259 61.0
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 5.0e-83 312.0 260 61.5
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 8.4e-83 311.2 260 61.5
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 1.9e-82 310.1 269 59.9
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 4.2e-82 308.9 259 61.0
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 5.5e-82 308.5 259 61.8
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 9.3e-82 307.8 203 75.9
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.2e-81 307.4 274 58.4
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 2.1e-81 306.6 297 55.9
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 2.1e-81 306.6 259 60.6
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 2.1e-81 306.6 259 61.4
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 3.6e-81 305.8 270 58.9
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 3.6e-81 305.8 259 61.8
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 3.0e-80 302.8 252 61.1
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 5.7e-79 298.5 258 58.1
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 7.4e-79 298.1 240 64.2
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 2.8e-78 296.2 259 57.9
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 8.2e-78 294.7 259 57.1
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 1.8e-77 293.5 259 57.9
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 1.8e-77 293.5 259 57.9
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 6.9e-77 291.6 259 57.9
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.2e-76 290.8 243 58.4
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 1.5e-76 290.4 259 57.5
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 1.5e-76 290.4 259 57.5
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 1.5e-76 290.4 259 57.5
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 1.5e-76 290.4 259 57.5
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.0e-76 290.0 265 57.0
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 2.6e-76 289.7 259 57.5
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 4.5e-76 288.9 259 56.8
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 4.5e-76 288.9 259 57.1
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 5.9e-76 288.5 259 56.8
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 7.7e-76 288.1 259 57.1
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 7.7e-76 288.1 259 57.1
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.0e-75 287.7 259 57.1
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.2e-73 280.8 250 57.2
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 2.7e-73 279.6 271 56.8
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 2.0e-71 273.5 259 56.0
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 2.0e-71 273.5 259 56.4
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 5.7e-71 271.9 259 55.2
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 4.8e-70 268.9 259 55.2
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.5e-68 263.8 270 52.2
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 2.0e-68 263.5 238 57.6
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.0e-67 261.2 231 57.6
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 2.1e-65 253.4 290 50.3
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 6.1e-65 251.9 259 51.4
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 1.0e-64 251.1 214 59.8
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.5e-63 247.3 275 50.5
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 2.2e-62 243.4 234 56.0
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 2.8e-62 243.0 124 89.5
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 1.4e-61 240.7 228 53.1
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 2.9e-59 233.0 211 59.2
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.2e-57 227.6 275 45.5
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 2.3e-56 223.4 126 80.2
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 2.0e-55 220.3 269 45.4
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 2.6e-55 219.9 267 45.3
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 4.2e-50 202.6 264 43.9
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 1.2e-49 201.1 266 41.4
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 1.2e-44 184.5 109 78.0
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 1.7e-43 180.6 103 79.6
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 8.0e-33 145.2 90 78.9
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 2.2e-30 137.1 83 75.9
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 5.4e-29 132.5 163 46.6
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 8.6e-27 125.2 62 91.9
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 1.4e-24 117.9 102 60.8
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 4.1e-21 106.3 59 86.4
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.7e-19 100.9 81 60.5
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 5.6e-18 95.9 48 85.4
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 1.4e-16 91.3 56 82.1
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 2.3e-16 90.5 52 78.8
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 3.1e-08 63.5 250 25.2
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 6.8e-08 62.4 261 23.4


User provided reference genes

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