Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1650.6 819 100.0
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1451.4 851 84.7
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1443.7 849 84.0
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1438.3 851 83.8
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1431.8 865 82.0
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1430.6 835 84.8
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1428.3 850 82.7
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1426.0 868 81.6
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1409.8 843 82.8
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1404.4 850 82.1
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1401.3 850 81.5
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1401.0 850 82.0
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1397.5 850 82.5
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1389.8 850 81.3
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1387.5 853 81.0
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1384.0 851 80.3
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1380.2 864 78.7
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1379.4 852 80.3
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1378.6 852 80.8
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1377.1 851 79.9
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1375.1 851 80.1
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1375.1 898 76.8
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1374.8 848 80.5
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1374.0 852 80.0
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1373.6 850 80.6
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1373.2 851 80.5
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1372.1 848 80.3
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1370.9 857 79.3
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1370.9 843 80.7
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1370.9 857 79.2
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1370.9 857 79.2
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1368.2 850 80.4
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1367.8 848 79.8
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1367.4 848 80.0
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1365.1 855 79.2
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1364.7 848 79.8
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1363.6 854 80.3
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1362.8 866 78.9
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1362.4 866 78.8
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1359.7 866 78.6
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1359.7 866 78.6
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1359.7 866 78.6
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1357.0 851 79.0
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1356.7 866 78.4
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1356.7 866 78.4
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1356.7 851 79.1
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1355.5 866 78.6
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1355.5 857 78.8
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1352.4 866 77.9
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1351.3 866 78.2
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1350.9 866 77.9
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1350.1 852 79.9
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1350.1 852 79.0
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1348.6 852 78.9
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1345.1 910 75.1
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1343.9 820 80.6
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1343.2 853 79.5
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1340.1 916 74.2
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1337.0 852 78.6
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1337.0 850 78.0
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1336.6 865 77.8
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1336.2 850 78.5
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1328.5 873 76.3
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1327.4 854 77.6
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1327.0 867 76.1
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1321.2 854 76.5
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1320.8 929 73.3
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1314.7 847 76.2
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1308.1 850 76.4
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1306.6 867 75.1
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1302.7 850 76.6
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1300.8 850 75.8
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1300.8 867 74.9
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1298.9 867 74.7
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1298.1 853 75.7
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1296.2 851 76.1
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1290.4 853 75.6
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1288.1 768 83.6
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1287.7 853 75.3
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1282.7 955 69.3
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1277.3 880 74.1
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1275.4 926 70.1
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1271.5 926 69.9
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1263.4 848 73.7
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1227.6 793 75.9
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1224.5 817 74.1
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1211.4 863 69.2
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1207.6 844 69.7
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1190.3 732 80.5
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1093.2 846 67.8
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1090.5 850 66.2
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 8.4e-311 1070.1 852 66.7
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 5.7e-307 1057.4 848 60.3
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 1.2e-301 1039.6 1142 53.1
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 1.8e-300 1035.8 841 60.2
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 1.8e-297 1025.8 775 69.5
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 1.8e-297 1025.8 885 60.7
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 3.6e-285 984.9 700 74.0
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 3.6e-285 984.9 845 56.8
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 5.6e-278 961.1 863 62.6
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 1.1e-260 903.7 630 71.4
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 2.9e-242 842.4 733 62.8
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 6.2e-237 824.7 606 68.8
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 2.7e-224 782.7 689 62.7
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.6e-198 696.4 448 75.4
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.2e-192 677.6 470 75.7
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 2.3e-191 673.3 434 79.3
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 4.9e-189 665.6 412 76.7
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.9e-178 629.8 370 87.0
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.9e-177 627.1 608 57.2
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 3.4e-174 616.3 342 89.8
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 9.8e-166 588.2 854 39.8
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 4.7e-160 569.3 363 74.7
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 1.5e-153 547.7 860 37.9
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 3.5e-131 473.4 438 57.1
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 4.0e-127 459.9 833 34.7
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 2.3e-114 417.5 376 63.3
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.3e-113 413.7 334 55.4
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 1.3e-112 411.8 1007 29.9
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 1.1e-108 398.7 601 44.3
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.0e-98 365.5 333 55.0
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.5e-97 361.7 267 66.7
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.8e-82 311.6 157 90.4
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 4.0e-82 310.5 245 63.7
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 4.4e-81 307.0 165 89.1
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.0e-74 285.8 321 48.3
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.2e-70 272.3 187 71.1
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 1.2e-43 182.6 97 87.6
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-38 165.2 135 60.0
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 6.6e-37 160.2 97 78.4
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 3.4e-33 147.9 95 76.8
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 4.4e-33 147.5 93 79.6
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 7.1e-31 140.2 85 80.0
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-30 139.4 91 74.7
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.3e-29 136.0 91 73.6
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 3.0e-29 134.8 115 66.1
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 3.9e-29 134.4 87 74.7
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.1e-28 132.9 67 88.1
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.4e-26 125.9 123 52.8
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.4e-26 125.2 118 62.7
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 3.1e-26 124.8 96 70.8
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 9.0e-26 123.2 114 59.6
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 2.0e-25 122.1 109 63.3
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 2.2e-24 118.6 104 64.4
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 2.9e-24 118.2 64 81.2
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-22 112.5 68 75.0
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.5e-22 111.3 77 74.0
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 4.6e-22 110.9 97 62.9
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 6.7e-21 107.1 61 77.0
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 4.8e-19 100.9 116 48.3
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 5.3e-18 97.4 52 84.6
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.5e-17 95.9 52 82.7
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 4.5e-17 94.4 91 59.3
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 4.5e-17 94.4 54 90.7
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 2.4e-15 88.6 87 56.3
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 2.4e-15 88.6 87 56.3
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 1.5e-12 79.3 165 37.0
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.9e-12 79.0 194 28.4
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 1.9e-12 79.0 49 81.6
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 2.8e-11 75.1 37 94.6
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 1.4e-10 72.8 61 62.3
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 9.0e-10 70.1 85 52.9
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.5e-06 58.2 33 84.8
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 6.0e-06 57.4 41 70.7
Rhsim07G0116000 Rhododendron simsii HOM05D000382 ORTHO05D037450 6.0e-06 57.4 82 48.8


User provided reference genes

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