Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 0.0e+00 1112.8 558 100.0
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 2.8e-212 742.3 654 59.2
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 4.9e-209 731.5 653 58.7
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 4.9e-209 731.5 654 58.4
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 5.4e-208 728.0 635 59.7
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.6e-207 726.5 642 59.2
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 3.5e-207 725.3 642 59.2
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 1.3e-206 723.4 684 56.1
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 1.3e-206 723.4 690 55.8
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 8.7e-206 720.7 642 58.7
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 3.6e-204 715.3 647 58.1
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 3.1e-203 712.2 691 55.4
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 2.6e-202 709.1 647 57.5
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 1.7e-201 706.4 763 52.2
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 6.4e-201 704.5 704 54.8
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 3.2e-200 702.2 653 56.2
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 5.4e-200 701.4 617 58.3
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 1.2e-199 700.3 628 58.3
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.5e-199 698.7 622 57.9
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.7e-198 696.4 641 56.9
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 2.3e-198 696.0 621 57.8
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 2.3e-198 696.0 616 58.3
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 3.9e-198 695.3 588 60.2
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 8.7e-198 694.1 626 57.7
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 2.5e-197 692.6 624 57.5
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 2.5e-197 692.6 624 57.5
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 2.5e-197 692.6 624 57.5
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 9.6e-197 690.6 619 58.0
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 2.1e-196 689.5 643 56.3
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 2.1e-196 689.5 625 58.1
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 3.6e-196 688.7 612 58.2
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 8.1e-196 687.6 620 57.4
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 4.0e-195 685.3 617 57.5
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 5.3e-195 684.9 658 55.2
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 9.0e-195 684.1 610 57.0
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 9.0e-195 684.1 624 56.4
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.2e-194 683.7 656 54.7
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 1.2e-194 683.7 644 55.7
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 4.5e-194 681.8 617 57.1
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 4.5e-194 681.8 659 54.9
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 5.8e-194 681.4 624 57.5
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 9.9e-194 680.6 624 56.9
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 9.9e-194 680.6 648 55.1
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 1.3e-193 680.2 624 56.9
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 1.7e-193 679.9 645 55.0
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 2.9e-193 679.1 642 55.3
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 3.8e-193 678.7 616 56.8
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 4.9e-193 678.3 624 56.7
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 4.9e-193 678.3 626 56.5
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 4.9e-193 678.3 648 54.9
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.1e-192 677.2 624 57.2
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 1.1e-192 677.2 624 56.7
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 4.2e-192 675.2 721 51.0
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 1.2e-191 673.7 627 55.8
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 2.1e-191 672.9 768 50.9
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 1.0e-190 670.6 627 55.5
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 2.3e-190 669.5 615 56.6
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 5.1e-190 668.3 623 55.5
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 8.7e-190 667.5 630 54.3
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 1.1e-189 667.2 658 53.2
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.3e-188 663.7 696 52.0
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 3.7e-188 662.1 632 56.0
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 6.2e-188 661.4 607 55.8
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.8e-187 659.8 625 54.2
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 2.4e-187 659.4 625 54.4
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 4.0e-187 658.7 619 54.4
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 4.0e-187 658.7 753 48.9
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 2.6e-186 656.0 618 54.4
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.4e-186 655.6 624 55.3
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 1.3e-185 653.7 668 53.3
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 1.9e-184 649.8 647 53.6
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.5e-184 649.4 590 56.6
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 6.0e-183 644.8 660 51.8
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 1.3e-182 643.7 663 50.4
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 3.3e-181 639.0 625 54.7
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 2.8e-180 636.0 605 55.0
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 2.4e-179 632.9 562 58.4
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 2.0e-178 629.8 659 51.7
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 4.5e-178 628.6 662 51.5
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 7.6e-178 627.9 626 52.4
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 1.3e-177 627.1 669 51.9
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 2.2e-177 626.3 622 52.7
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.3e-174 617.1 625 53.0
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.3e-174 617.1 603 54.4
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.7e-174 614.4 573 55.7
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 2.5e-173 612.8 642 51.9
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.5e-173 612.8 642 51.9
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.8e-172 609.4 525 60.2
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 9.0e-171 604.4 651 48.5
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 2.0e-170 603.2 654 49.8
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 1.7e-169 600.1 603 52.7
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 3.8e-169 599.0 674 48.4
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.9e-168 596.7 761 46.8
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 6.7e-166 588.2 705 47.5
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 2.0e-165 586.6 625 51.0
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.3e-165 585.9 695 47.8
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 2.2e-164 583.2 565 53.6
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 1.4e-163 580.5 650 51.2
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 4.5e-162 575.5 564 53.7
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 9.4e-160 567.8 539 55.1
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.6e-159 567.0 642 50.8
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 5.1e-158 562.0 601 50.6
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 3.3e-157 559.3 327 82.3
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 4.4e-157 558.9 642 46.6
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 4.4e-157 558.9 625 46.4
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.5e-154 550.4 333 79.3
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 4.5e-154 548.9 312 83.3
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.7e-153 547.0 652 47.7
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 3.8e-153 545.8 330 79.7
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 1.5e-152 543.9 619 47.5
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 3.2e-152 542.7 604 47.2
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 2.7e-151 539.7 652 44.8
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 1.4e-150 537.3 309 80.6
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 5.2e-150 535.4 647 45.0
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.1e-147 527.7 758 42.2
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 3.1e-147 526.2 753 42.9
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 1.5e-144 517.3 679 41.4
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.2e-141 507.7 610 49.0
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 1.3e-137 494.2 330 73.9
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 3.2e-136 489.6 693 41.6
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 3.6e-135 486.1 326 70.2
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.0e-134 484.6 367 64.0
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.4e-133 479.6 347 66.3
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 7.5e-133 478.4 347 68.0
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.7e-132 476.1 550 48.2
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 1.8e-131 473.8 346 67.6
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 4.5e-130 469.2 331 67.1
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.1e-128 464.5 558 48.0
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.3e-126 456.8 302 69.5
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.2e-126 455.7 302 69.2
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 6.6e-105 385.6 654 36.1
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 3.9e-97 359.8 341 57.8
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 4.9e-92 342.8 725 31.4
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 1.5e-80 304.7 632 30.2
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 9.9e-77 292.0 659 29.9
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.3e-76 291.6 608 29.3
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.5e-64 251.5 363 40.5
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 7.6e-61 239.2 132 81.8
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 4.2e-59 233.4 117 88.0
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 4.6e-58 229.9 156 69.2
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 1.3e-57 228.4 156 68.6
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 3.0e-57 227.3 132 77.3
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 5.1e-57 226.5 156 66.7
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 3.3e-56 223.8 108 100.0
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.3e-55 221.9 132 75.8
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.7e-55 220.3 118 85.6
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 5.3e-54 216.5 117 83.8
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 6.9e-54 216.1 145 69.7
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.2e-53 215.3 115 79.1
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.9e-53 213.0 115 77.4
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.0e-49 202.2 155 61.3
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.8e-49 199.1 103 83.5
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 1.3e-39 168.7 83 86.7
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.5e-37 160.6 101 75.2
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.7e-34 150.2 91 73.6
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 1.5e-32 145.2 80 77.5
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 3.5e-29 134.0 73 82.2
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 3.5e-29 134.0 73 82.2
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 4.7e-26 123.6 72 76.4
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.0e-25 122.5 147 46.3
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.3e-25 121.3 82 68.3
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 9.8e-24 115.9 85 63.5
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 1.1e-22 112.5 69 72.5
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 8.3e-15 86.3 50 72.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 1.1e-11 75.9 50 72.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 6.1e-10 70.1 44 75.0
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 5.2e-09 67.0 43 74.4


User provided reference genes

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