Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.85 Carica papaya HOM05D001688 ORTHO05D001571 1.1e-34 150.2 133 100.0
Atru.chr8.1641 Acer truncatum HOM05D001688 ORTHO05D001571 3.4e-15 85.5 90 56.7
Haze_19531 Corylus avellana HOM05D001688 ORTHO05D001571 3.4e-15 85.5 85 56.5
Dinv19823 Davidia involucrata HOM05D001688 ORTHO05D001571 9.8e-15 84.0 85 57.6
Gohir.D11G341300 Gossypium hirsutum HOM05D001688 ORTHO05D001571 2.8e-14 82.4 90 53.3
Thecc.05G080400 Theobroma cacao HOM05D001688 ORTHO05D001571 3.7e-14 82.0 90 53.3
Gohir.A01G209500 Gossypium hirsutum HOM05D001688 ORTHO05D001571 4.9e-14 81.6 95 51.6
GSVIVG01033774001 Vitis vinifera HOM05D001688 ORTHO05D001571 4.9e-14 81.6 92 53.3
Dinv21263 Davidia involucrata HOM05D001688 ORTHO05D001571 1.1e-13 80.5 85 55.3
Gorai.007G371300 Gossypium raimondii HOM05D001688 ORTHO05D001571 1.1e-13 80.5 90 52.2
Gohir.A11G322200 Gossypium hirsutum HOM05D001688 ORTHO05D001571 1.4e-13 80.1 90 53.3
SGA_v2.0_scaffold40G15411 Striga asiatica HOM05D001688 ORTHO05D001571 2.4e-13 79.3 84 54.8
MSTRG.10350 Avicennia marina HOM05D001688 ORTHO05D001571 3.2e-13 79.0 84 54.8
Sed0003899 Sechium edule HOM05D001688 ORTHO05D001571 3.2e-13 79.0 86 51.2
CAN.G824.24 Capsicum annuum HOM05D001688 ORTHO05D001571 4.1e-13 78.6 85 54.1
ClCG10G019420 Citrullus lanatus HOM05D001688 ORTHO05D001571 4.1e-13 78.6 84 51.2
COL.COLO4_29822 Corchorus olitorius HOM05D001688 ORTHO05D001571 4.1e-13 78.6 92 51.1
MELO3C009430.2 Cucumis melo HOM05D001688 ORTHO05D001571 4.1e-13 78.6 84 51.2
QL07p040656 Quercus lobata HOM05D001688 ORTHO05D001571 4.1e-13 78.6 84 53.6
SGA_v2.0_scaffold75G24799 Striga asiatica HOM05D001688 ORTHO05D001571 4.1e-13 78.6 83 54.2
arahy.Tifrunner.gnm1.ann1.63G8L5 Arachis hypogaea HOM05D001688 ORTHO05D001571 7.0e-13 77.8 84 50.0
arahy.Tifrunner.gnm1.ann1.DY7VNH Arachis hypogaea HOM05D001688 ORTHO05D001571 7.0e-13 77.8 84 50.0
Ciclev10012182m.g Citrus clementina HOM05D001688 ORTHO05D001571 7.0e-13 77.8 89 52.8
CsaV3_3G036760 Cucumis sativus L. HOM05D001688 ORTHO05D001571 7.0e-13 77.8 84 51.2
Duzib093G2204 Durio zibethinus HOM05D001688 ORTHO05D001571 7.0e-13 77.8 94 50.0
Gohir.D01G198600 Gossypium hirsutum HOM05D001688 ORTHO05D001571 9.2e-13 77.4 98 56.1
HanXRQChr01g0028841 Helianthus annuus HOM05D001688 ORTHO05D001571 2.7e-12 75.9 84 51.2
Nn2g13988 Nelumbo nucifera HOM05D001688 ORTHO05D001571 2.7e-12 75.9 88 51.1
PGSC0003DMG400002684 Solanum tuberosum HOM05D001688 ORTHO05D001571 2.7e-12 75.9 85 52.9
ECA248G1510 Erigeron canadensis HOM05D001688 ORTHO05D001571 3.5e-12 75.5 84 50.0
Manes.09G060536 Manihot esculenta HOM05D001688 ORTHO05D001571 3.5e-12 75.5 88 53.4
Nitab4.5_0001922g0030 Nicotiana tabacum HOM05D001688 ORTHO05D001571 3.5e-12 75.5 88 50.0
SalBow3G0353 Salvia bowleyana HOM05D001688 ORTHO05D001571 5.9e-12 74.7 87 52.9
MSTRG.19226 Avicennia marina HOM05D001688 ORTHO05D001571 7.8e-12 74.3 84 51.2
CSS0033564 Camellia sinensis var. sinensis HOM05D001688 ORTHO05D001571 7.8e-12 74.3 85 50.6
Potri.006G116500 Populus trichocarpa HOM05D001688 ORTHO05D001571 7.8e-12 74.3 88 51.1
Cc06_g05190 Coffea canephora HOM05D001688 ORTHO05D001571 1.0e-11 73.9 84 51.2
CiPaw.13G141200 Carya illinoinensis HOM05D001688 ORTHO05D001571 1.3e-11 73.6 85 49.4
Lalb_Chr20g0112201 Lupinus albus HOM05D001688 ORTHO05D001571 1.3e-11 73.6 84 48.8
Rhsim03G0081700 Rhododendron simsii HOM05D001688 ORTHO05D001571 1.3e-11 73.6 85 52.9
unitig_578.g16376 Utricularia gibba HOM05D001688 ORTHO05D001571 1.3e-11 73.6 84 51.2
Glyma.12G181400 Glycine max HOM05D001688 ORTHO05D001571 1.7e-11 73.2 87 49.4
Solyc09g009030.4 Solanum lycopersicum HOM05D001688 ORTHO05D001571 1.7e-11 73.2 85 51.8
CSS0011669 Camellia sinensis var. sinensis HOM05D001688 ORTHO05D001571 2.3e-11 72.8 85 51.8
CSS0050437 Camellia sinensis var. sinensis HOM05D001688 ORTHO05D001571 2.3e-11 72.8 85 52.9
CiPaw.09G008200 Carya illinoinensis HOM05D001688 ORTHO05D001571 2.9e-11 72.4 87 51.7
Nitab4.5_0005447g0010 Nicotiana tabacum HOM05D001688 ORTHO05D001571 2.9e-11 72.4 85 49.4
Nitab4.5_0000381g0300 Nicotiana tabacum HOM05D001688 ORTHO05D001571 5.0e-11 71.6 85 48.2
Sabra06G0090900 Salix brachista HOM05D001688 ORTHO05D001571 5.0e-11 71.6 87 49.4
Sp6g38980 Schrenkiella parvula HOM05D001688 ORTHO05D001571 5.0e-11 71.6 85 50.6
CDE11G0679 Ceratophyllum demersum HOM05D001688 ORTHO05D001571 6.6e-11 71.2 91 50.5
Atru.chr3.3388 Acer truncatum HOM05D001688 ORTHO05D001571 8.6e-11 70.9 81 50.6
AL6G13270 Arabidopsis lyrata HOM05D001688 ORTHO05D001571 8.6e-11 70.9 88 50.0
Glyma.11G189500 Glycine max HOM05D001688 ORTHO05D001571 8.6e-11 70.9 84 50.0
AT5G03740 Arabidopsis thaliana HOM05D001688 ORTHO05D001571 1.1e-10 70.5 88 50.0
CSS0026506 Camellia sinensis var. sinensis HOM05D001688 ORTHO05D001571 1.1e-10 70.5 85 49.4
Glyma.12G084700 Glycine max HOM05D001688 ORTHO05D001571 1.1e-10 70.5 84 48.8
Aa31LG1G21510 Aethionema arabicum HOM05D001688 ORTHO05D001571 1.5e-10 70.1 94 50.0
BolC9t60053H Brassica oleracea HOM05D001688 ORTHO05D001571 1.5e-10 70.1 90 48.9
Manes.04G009200 Manihot esculenta HOM05D001688 ORTHO05D001571 1.5e-10 70.1 84 48.8
Nitab4.5_0010922g0040 Nicotiana tabacum HOM05D001688 ORTHO05D001571 1.5e-10 70.1 88 48.9
Solyc10g085560.3 Solanum lycopersicum HOM05D001688 ORTHO05D001571 1.5e-10 70.1 85 49.4
Sopen10g034970 Solanum pennellii HOM05D001688 ORTHO05D001571 1.5e-10 70.1 85 49.4
PGSC0003DMG400008398 Solanum tuberosum HOM05D001688 ORTHO05D001571 1.5e-10 70.1 85 49.4
TAR636G1096 Trochodendron aralioides HOM05D001688 ORTHO05D001571 1.5e-10 70.1 84 59.5
TAR636G3115 Trochodendron aralioides HOM05D001688 ORTHO05D001571 1.5e-10 70.1 84 59.5
unitig_8.g4722 Utricularia gibba HOM05D001688 ORTHO05D001571 1.9e-10 69.7 86 47.7
Zm00001eb356490 Zea mays HOM05D001688 ORTHO05D001571 1.9e-10 69.7 88 47.7
Haze_23455 Corylus avellana HOM05D001688 ORTHO05D001571 3.3e-10 68.9 84 48.8
Cpa.g.sc47.60 Carica papaya HOM05D001688 ORTHO05D001571 4.3e-10 68.6 83 47.0
Thhalv10014245m.g Eutrema salsugineum HOM05D001688 ORTHO05D001571 4.3e-10 68.6 86 51.2
Lj3g0001709 Lotus japonicus HOM05D001688 ORTHO05D001571 4.3e-10 68.6 84 46.4
Rhsim01G0208600 Rhododendron simsii HOM05D001688 ORTHO05D001571 4.3e-10 68.6 95 41.1
CARHR209560 Cardamine hirsuta HOM05D001688 ORTHO05D001571 5.6e-10 68.2 87 49.4
unitig_22.g5116 Utricularia gibba HOM05D001688 ORTHO05D001571 5.6e-10 68.2 89 46.1
Carub.0006s0266 Capsella rubella HOM05D001688 ORTHO05D001571 7.3e-10 67.8 87 50.6
AUR62033584 Chenopodium quinoa HOM05D001688 ORTHO05D001571 7.3e-10 67.8 86 46.5
Migut.J00993 Erythranthe guttata HOM05D001688 ORTHO05D001571 7.3e-10 67.8 86 48.8
MBI17_g11106_MAGBIO Magnolia biondii HOM05D001688 ORTHO05D001571 7.3e-10 67.8 89 44.9
PGR102G0030 Punica granatum HOM05D001688 ORTHO05D001571 7.3e-10 67.8 84 50.0
EL10Ac7g16997 Beta vulgaris HOM05D001688 ORTHO05D001571 1.2e-09 67.0 85 45.9
MD11G1156500 Malus domestica HOM05D001688 ORTHO05D001571 1.2e-09 67.0 84 59.5
Aqoxy2G01426 Aquilegia oxysepala HOM05D001688 ORTHO05D001571 1.6e-09 66.6 85 44.7
CsaV3_6G014670 Cucumis sativus L. HOM05D001688 ORTHO05D001571 1.6e-09 66.6 85 48.2
HanXRQChr11g0351121 Helianthus annuus HOM05D001688 ORTHO05D001571 1.6e-09 66.6 84 45.2
Phvul.005G127600 Phaseolus vulgaris HOM05D001688 ORTHO05D001571 1.6e-09 66.6 84 46.4
Rhsim13G0105400 Rhododendron simsii HOM05D001688 ORTHO05D001571 1.6e-09 66.6 84 47.6
TWI31G0812 Tripterygium wilfordii HOM05D001688 ORTHO05D001571 1.6e-09 66.6 83 48.2
GSVIVG01031404001 Vitis vinifera HOM05D001688 ORTHO05D001571 1.6e-09 66.6 87 44.8
TWI79G0547 Tripterygium wilfordii HOM05D001688 ORTHO05D001571 2.1e-09 66.2 85 48.2
HPP92_011561 Vanilla planifolia HOM05D001688 ORTHO05D001571 2.1e-09 66.2 93 46.2
arahy.Tifrunner.gnm1.ann1.FWC0NE Arachis hypogaea HOM05D001688 ORTHO05D001571 2.8e-09 65.9 83 45.8
arahy.Tifrunner.gnm1.ann1.TTDV1E Arachis hypogaea HOM05D001688 ORTHO05D001571 2.8e-09 65.9 83 45.8
MSTRG.26653 Avicennia marina HOM05D001688 ORTHO05D001571 2.8e-09 65.9 84 48.8
A10p32360 Brassica napus HOM05D001688 ORTHO05D001571 2.8e-09 65.9 92 47.8
BraA10t45276Z Brassica rapa HOM05D001688 ORTHO05D001571 2.8e-09 65.9 92 47.8
MD03G1134300 Malus domestica HOM05D001688 ORTHO05D001571 2.8e-09 65.9 84 46.4
TAR369G0885 Trochodendron aralioides HOM05D001688 ORTHO05D001571 2.8e-09 65.9 85 44.7
VMungo1127G1742 Vigna mungo HOM05D001688 ORTHO05D001571 2.8e-09 65.9 85 44.7
Eucgr.J00421 Eucalyptus grandis HOM05D001688 ORTHO05D001571 3.6e-09 65.5 85 45.9
Os05g0597100 Oryza sativa ssp. japonica HOM05D001688 ORTHO05D001571 3.6e-09 65.5 86 46.5
ClCG02G021880 Citrullus lanatus HOM05D001688 ORTHO05D001571 4.7e-09 65.1 84 48.8
Peaxi162Scf00433g00087 Petunia axillaris HOM05D001688 ORTHO05D001571 4.7e-09 65.1 99 42.4
Actinidia03679 Actinidia chinensis HOM05D001688 ORTHO05D001571 6.1e-09 64.7 88 58.0
TWI75G0541 Tripterygium wilfordii HOM05D001688 ORTHO05D001571 6.1e-09 64.7 84 48.8
GSVIVG01000318001 Vitis vinifera HOM05D001688 ORTHO05D001571 6.1e-09 64.7 87 43.7
C09p73180 Brassica napus HOM05D001688 ORTHO05D001571 8.0e-09 64.3 93 53.8
THA.LOC104810899 Tarenaya hassleriana HOM05D001688 ORTHO05D001571 8.0e-09 64.3 84 44.0
BcaC06g32081 Brassica carinata HOM05D001688 ORTHO05D001571 1.0e-08 63.9 88 43.2
DCAR_018742 Daucus carota HOM05D001688 ORTHO05D001571 1.4e-08 63.5 86 44.2
Duzib170G0280 Durio zibethinus HOM05D001688 ORTHO05D001571 1.4e-08 63.5 82 48.8
Lalb_Chr22g0350611 Lupinus albus HOM05D001688 ORTHO05D001571 1.4e-08 63.5 84 44.0
FvH4_6g17790 Fragaria vesca HOM05D001688 ORTHO05D001571 1.8e-08 63.2 89 46.1
FAN14G1368 Fragaria x ananassa HOM05D001688 ORTHO05D001571 1.8e-08 63.2 89 46.1
Peaxi162Scf00146g00614 Petunia axillaris HOM05D001688 ORTHO05D001571 1.8e-08 63.2 85 43.5
DCAR_015480 Daucus carota HOM05D001688 ORTHO05D001571 2.3e-08 62.8 83 43.4
MD14G1014900 Malus domestica HOM05D001688 ORTHO05D001571 2.3e-08 62.8 88 45.5
Manes.11G156700 Manihot esculenta HOM05D001688 ORTHO05D001571 2.3e-08 62.8 84 44.0
Glyma.03G190700 Glycine max HOM05D001688 ORTHO05D001571 3.1e-08 62.4 85 45.9
Lsat_1_v5_gn_1_50361 Lactuca sativa HOM05D001688 ORTHO05D001571 3.1e-08 62.4 89 39.3
Sed0011854 Sechium edule HOM05D001688 ORTHO05D001571 3.1e-08 62.4 79 44.3
FAN02G0070 Fragaria x ananassa HOM05D001688 ORTHO05D001571 4.0e-08 62.0 89 44.9
FAN05G4964 Fragaria x ananassa HOM05D001688 ORTHO05D001571 4.0e-08 62.0 89 44.9
FAN05G5765 Fragaria x ananassa HOM05D001688 ORTHO05D001571 4.0e-08 62.0 89 44.9
FAN09G2940 Fragaria x ananassa HOM05D001688 ORTHO05D001571 4.0e-08 62.0 89 44.9
Gohir.A05G084101 Gossypium hirsutum HOM05D001688 ORTHO05D001571 4.0e-08 62.0 86 45.3
TAR633G0649 Trochodendron aralioides HOM05D001688 ORTHO05D001571 4.0e-08 62.0 85 58.8
MELO3C021456.2 Cucumis melo HOM05D001688 ORTHO05D001571 5.2e-08 61.6 84 45.2
Gohir.D05G086900 Gossypium hirsutum HOM05D001688 ORTHO05D001571 5.2e-08 61.6 80 45.0
Gorai.009G088600 Gossypium raimondii HOM05D001688 ORTHO05D001571 5.2e-08 61.6 80 45.0
Lj1g0014712 Lotus japonicus HOM05D001688 ORTHO05D001571 5.2e-08 61.6 86 45.3
CsaV3_6G014680 Cucumis sativus L. HOM05D001688 ORTHO05D001571 6.8e-08 61.2 84 45.2
QL10p041431 Quercus lobata HOM05D001688 ORTHO05D001571 6.8e-08 61.2 86 53.5
Sp5g16430 Schrenkiella parvula HOM05D001688 ORTHO05D001571 6.8e-08 61.2 89 41.6
Prupe.6G118700 Prunus persica HOM05D001688 ORTHO05D001571 8.9e-08 60.8 83 57.8
MSTRG.18730 Avicennia marina HOM05D001688 ORTHO05D001571 1.2e-07 60.5 84 42.9
Potri.004G188800 Populus trichocarpa HOM05D001688 ORTHO05D001571 1.2e-07 60.5 84 44.0
Prupe.7G118500 Prunus persica HOM05D001688 ORTHO05D001571 1.5e-07 60.1 88 43.2
Sabra04G0129300 Salix brachista HOM05D001688 ORTHO05D001571 1.5e-07 60.1 85 42.4
THA.LOC104816375 Tarenaya hassleriana HOM05D001688 ORTHO05D001571 1.5e-07 60.1 90 45.6
vmacro14374 Vaccinium macrocarpon HOM05D001688 ORTHO05D001571 1.5e-07 60.1 64 43.8
AL6G14790 Arabidopsis lyrata HOM05D001688 ORTHO05D001571 2.0e-07 59.7 82 45.1
CiPaw.14G103900 Carya illinoinensis HOM05D001688 ORTHO05D001571 2.0e-07 59.7 84 59.5
CDE08G0795 Ceratophyllum demersum HOM05D000340 ORTHO05D000677 2.0e-07 59.7 100 54.0
Migut.L01752 Erythranthe guttata HOM05D001688 ORTHO05D001571 2.0e-07 59.7 84 47.6
Phvul.001G186300 Phaseolus vulgaris HOM05D001688 ORTHO05D001571 2.0e-07 59.7 79 44.3
Lalb_Chr14g0374231 Lupinus albus HOM05D001688 ORTHO05D001571 2.6e-07 59.3 83 42.2
Phvul.011G090000 Phaseolus vulgaris HOM05D001688 ORTHO05D001571 2.6e-07 59.3 83 43.4
CANSAT54G1531 Cannabis sativa HOM05D001688 ORTHO05D001571 3.4e-07 58.9 85 54.1
Ca_08965_v3 Cicer arietinum L. HOM05D001688 ORTHO05D001571 3.4e-07 58.9 84 42.9
Glyma.19G191000 Glycine max HOM05D001688 ORTHO05D001571 3.4e-07 58.9 83 44.6
Hund07702 Selenicereus undatus HOM05D001688 ORTHO05D001571 3.4e-07 58.9 79 48.1
Actinidia07209 Actinidia chinensis HOM05D001688 ORTHO05D001571 4.4e-07 58.5 84 44.0
CDE06G2425 Ceratophyllum demersum HOM05D001688 ORTHO05D001571 5.8e-07 58.2 88 44.3
Ciclev10028932m.g Citrus clementina HOM05D001688 ORTHO05D001571 9.8e-07 57.4 80 45.0
PSO063G4060 Papaver somniferum HOM05D001688 ORTHO05D001571 9.8e-07 57.4 87 41.4
Psat5g254240 Pisum sativum HOM05D001688 ORTHO05D001571 9.8e-07 57.4 84 47.6
TPR.G10243 Trifolium pratense HOM05D001688 ORTHO05D001571 9.8e-07 57.4 84 42.9
FvH4_3g29940 Fragaria vesca HOM05D001688 ORTHO05D001571 1.3e-06 57.0 86 44.2
FAN16G0851 Fragaria x ananassa HOM05D001688 ORTHO05D001571 1.3e-06 57.0 86 44.2
FAN21G2741 Fragaria x ananassa HOM05D001688 ORTHO05D001571 1.3e-06 57.0 86 44.2
AUR62038296 Chenopodium quinoa HOM05D001688 ORTHO05D001571 1.7e-06 56.6 80 46.2
DCAR_020779 Daucus carota HOM05D001688 ORTHO05D001571 1.7e-06 56.6 80 45.0
FAN11G2589 Fragaria x ananassa HOM05D001688 ORTHO05D001571 1.7e-06 56.6 86 44.2
VMungo1080G0825 Vigna mungo HOM05D001688 ORTHO05D001571 1.7e-06 56.6 84 44.0
CAN.G1099.3 Capsicum annuum HOM05D001688 ORTHO05D001571 2.2e-06 56.2 74 44.6
VMungo1383G2827 Vigna mungo HOM05D001688 ORTHO05D001571 2.2e-06 56.2 83 43.4
PSO339G0838 Papaver somniferum HOM05D001688 ORTHO05D001571 2.9e-06 55.8 86 40.7
Ah.01g016800 Amaranthus hybridus HOM05D001688 ORTHO05D001571 3.7e-06 55.5 79 44.3
PGR119G1578 Punica granatum HOM05D001688 ORTHO05D001571 3.7e-06 55.5 85 63.5
Lj2C128T7 Lonicera japonica HOM05D001688 ORTHO05D001571 4.9e-06 55.1 86 44.2
Lalb_Chr24g0395111 Lupinus albus HOM05D001688 ORTHO05D001571 6.4e-06 54.7 85 41.2


User provided reference genes

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