Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 0.0e+00 1307.0 663 100.0
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 2.4e-207 726.1 671 59.5
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 3.5e-206 722.2 670 57.9
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 9.0e-202 707.6 670 57.5
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 1.0e-200 704.1 668 56.1
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 2.9e-200 702.6 664 57.4
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 7.1e-199 698.0 669 58.3
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 4.6e-198 695.3 707 55.2
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.5e-196 690.3 710 54.5
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 5.3e-194 681.8 723 53.9
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 2.6e-193 679.5 728 51.9
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 7.2e-191 671.4 660 56.4
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 9.7e-188 661.0 661 55.4
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 5.3e-186 655.2 737 50.3
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 3.4e-185 652.5 708 52.0
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 1.7e-184 650.2 671 55.0
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 2.5e-183 646.4 719 51.3
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 5.5e-183 645.2 721 50.5
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.1e-182 643.3 723 51.9
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 1.0e-181 641.0 711 50.9
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 3.9e-181 639.0 733 51.4
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 8.8e-181 637.9 734 50.4
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 8.8e-181 637.9 669 54.0
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.5e-180 637.1 671 53.8
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 2.0e-180 636.7 718 50.7
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 6.3e-179 631.7 664 52.6
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 8.2e-179 631.3 716 50.1
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 1.4e-178 630.6 675 52.1
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 3.1e-178 629.4 716 50.3
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 1.5e-177 627.1 712 52.1
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 7.7e-177 624.8 670 53.4
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 1.7e-176 623.6 718 49.9
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 2.2e-176 623.2 674 52.8
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 2.2e-176 623.2 650 52.9
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 9.4e-175 617.8 717 49.4
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 1.2e-174 617.5 676 51.2
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.2e-174 617.5 722 49.4
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.1e-174 615.1 673 51.6
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.4e-173 614.0 721 50.2
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 1.8e-173 613.6 639 53.1
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 3.0e-173 612.8 671 51.9
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 5.2e-173 612.1 701 52.2
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 5.2e-173 612.1 674 51.5
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 8.8e-173 611.3 768 47.5
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 2.6e-172 609.8 657 53.9
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 5.7e-172 608.6 666 51.2
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 1.7e-171 607.1 728 48.4
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 2.4e-170 603.2 673 51.6
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 3.1e-170 602.8 718 48.1
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 3.5e-169 599.4 711 49.4
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.0e-168 597.8 666 52.0
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 1.5e-167 594.0 686 51.0
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 3.2e-167 592.8 669 51.9
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 3.2e-167 592.8 671 50.8
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 1.2e-166 590.9 674 51.2
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.8e-165 587.0 717 48.0
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 4.0e-165 585.9 729 48.0
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 5.2e-165 585.5 674 49.1
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 2.6e-164 583.2 713 47.5
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 2.6e-164 583.2 799 45.6
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.4e-162 576.6 755 46.1
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 5.3e-162 575.5 672 49.9
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.7e-161 573.2 766 45.4
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 4.5e-161 572.4 664 49.4
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 7.7e-161 571.6 717 47.4
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 8.5e-160 568.2 717 47.3
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 1.9e-159 567.0 729 46.2
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 3.2e-159 566.2 669 49.9
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 7.2e-159 565.1 724 47.5
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 2.1e-158 563.5 735 45.7
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 2.1e-158 563.5 718 47.9
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 1.5e-156 557.4 705 45.5
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 2.4e-154 550.1 576 52.3
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 5.4e-154 548.9 713 47.5
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 1.2e-153 547.7 739 46.1
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 4.5e-153 545.8 666 48.0
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.3e-152 544.3 674 47.6
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 2.3e-152 543.5 735 44.4
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 5.0e-152 542.3 742 44.2
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 4.7e-150 535.8 753 44.6
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 4.7e-150 535.8 717 45.6
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 4.0e-149 532.7 660 45.6
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 3.4e-148 529.6 726 45.2
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 7.3e-143 511.9 849 39.2
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.5e-140 504.2 695 45.0
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 2.7e-137 493.4 680 44.6
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 2.7e-137 493.4 621 49.0
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 4.6e-137 492.7 761 42.4
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 1.4e-130 471.1 655 43.4
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 3.5e-129 466.5 684 41.4
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 6.6e-128 462.2 633 45.7
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 4.3e-127 459.5 659 43.2
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.1e-126 457.2 702 42.9
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 1.4e-125 454.5 854 37.0
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 1.5e-124 451.1 828 37.8
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 2.0e-124 450.7 858 36.7
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 3.4e-124 449.9 826 38.4
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.9e-122 444.1 663 42.7
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 5.6e-119 432.6 467 52.7
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 1.6e-113 414.5 662 40.8
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 4.3e-111 406.4 823 36.7
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 1.8e-109 401.0 514 47.5
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 2.0e-108 397.5 670 40.9
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 6.6e-104 382.5 718 36.9
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 3.3e-103 380.2 671 39.6
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 9.0e-101 372.1 665 38.6
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 2.4e-85 320.9 649 35.6
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.0e-84 317.8 668 35.5
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 3.7e-70 270.4 630 32.7
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 1.5e-68 265.0 346 44.8
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.0e-67 262.3 373 43.4
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 2.3e-64 251.1 731 28.2
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 8.8e-64 249.2 649 33.1
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.5e-60 238.4 277 47.7
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 5.5e-58 229.9 667 28.8
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 2.6e-55 221.1 882 26.6
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 2.2e-51 208.0 389 37.0
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 8.0e-49 199.5 201 49.3
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 1.8e-45 188.3 174 54.0
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.8e-45 188.3 174 54.0
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 2.0e-44 184.9 663 27.5
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 2.9e-35 154.5 129 64.3
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 1.0e-32 146.0 525 27.4
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 2.2e-30 138.3 126 60.3
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.1e-29 136.0 180 42.8
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 2.0e-28 131.7 80 78.8
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 1.7e-27 128.6 187 44.4
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.4e-21 109.0 96 55.2
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.7e-20 104.8 104 54.8
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 1.5e-18 99.0 110 45.5
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 1.2e-17 95.9 100 49.0
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 9.2e-13 79.7 161 38.5
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 8.1e-09 66.6 173 35.3
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 2.0e-07 62.0 54 59.3


User provided reference genes

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