Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 7.0e-110 400.6 198 100.0
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 1.5e-40 170.2 128 73.4
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 5.5e-30 135.2 110 61.8
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 4.7e-29 132.1 118 61.0
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 6.1e-29 131.7 118 58.5
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 6.1e-29 131.7 118 58.5
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 6.1e-29 131.7 129 57.4
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 1.0e-28 131.0 94 69.1
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.4e-28 130.6 127 54.3
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.8e-28 130.2 94 69.1
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.3e-28 129.8 120 57.5
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.3e-28 129.8 145 51.0
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 2.3e-28 129.8 119 58.0
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 3.0e-28 129.4 127 53.5
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 3.0e-28 129.4 119 56.3
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 4.0e-28 129.0 121 57.9
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 1.1e-27 127.5 119 56.3
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.1e-27 127.5 127 54.3
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 1.5e-27 127.1 119 56.3
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.6e-27 126.3 127 52.8
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 4.4e-27 125.6 89 69.7
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 4.4e-27 125.6 90 72.2
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 4.4e-27 125.6 90 72.2
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 4.4e-27 125.6 85 70.6
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 4.4e-27 125.6 127 53.5
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 7.5e-27 124.8 128 53.9
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 9.7e-27 124.4 90 71.1
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 9.7e-27 124.4 119 54.6
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 1.3e-26 124.0 120 59.2
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 1.3e-26 124.0 85 69.4
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 1.7e-26 123.6 119 54.6
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 1.7e-26 123.6 91 68.1
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 1.7e-26 123.6 117 54.7
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 2.8e-26 122.9 117 55.6
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 2.8e-26 122.9 145 51.7
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 3.7e-26 122.5 95 64.2
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 3.7e-26 122.5 122 57.4
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 3.7e-26 122.5 112 58.0
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 4.8e-26 122.1 119 54.6
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 4.8e-26 122.1 129 51.9
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 6.3e-26 121.7 86 70.9
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 6.3e-26 121.7 119 52.9
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 6.3e-26 121.7 144 49.3
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 6.3e-26 121.7 85 69.4
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 1.1e-25 120.9 112 59.8
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 1.4e-25 120.6 143 47.6
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.8e-25 120.2 128 53.1
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 1.8e-25 120.2 117 52.1
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 3.1e-25 119.4 128 50.8
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 4.1e-25 119.0 128 51.6
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 4.1e-25 119.0 118 54.2
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 5.3e-25 118.6 151 44.4
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 7.0e-25 118.2 119 53.8
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 9.1e-25 117.9 118 53.4
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 1.2e-24 117.5 117 51.3
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.2e-24 117.5 143 50.3
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 1.2e-24 117.5 120 53.3
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.2e-24 117.5 127 51.2
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 1.2e-24 117.5 127 49.6
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 1.6e-24 117.1 117 52.1
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 1.6e-24 117.1 117 53.0
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 1.6e-24 117.1 120 52.5
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 1.6e-24 117.1 128 49.2
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 2.0e-24 116.7 117 53.8
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 2.7e-24 116.3 121 52.9
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 2.7e-24 116.3 127 51.2
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 3.5e-24 115.9 129 49.6
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 3.5e-24 115.9 127 50.4
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 4.5e-24 115.5 117 51.3
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 4.5e-24 115.5 84 66.7
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 4.5e-24 115.5 84 66.7
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 4.5e-24 115.5 117 53.8
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 4.5e-24 115.5 128 48.4
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 5.9e-24 115.2 84 66.7
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 5.9e-24 115.2 93 62.4
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 7.7e-24 114.8 93 61.3
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 1.0e-23 114.4 117 53.0
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.0e-23 114.4 127 49.6
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 1.0e-23 114.4 126 47.6
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 1.0e-23 114.4 127 50.4
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.3e-23 114.0 127 49.6
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.7e-23 113.6 134 50.0
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 2.2e-23 113.2 117 50.4
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 2.2e-23 113.2 150 47.3
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 2.2e-23 113.2 118 52.5
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 2.9e-23 112.8 150 46.7
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 2.9e-23 112.8 119 51.3
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 2.9e-23 112.8 128 49.2
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 3.8e-23 112.5 118 52.5
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 3.8e-23 112.5 121 52.9
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.0e-23 112.1 78 71.8
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 5.0e-23 112.1 85 62.4
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 5.0e-23 112.1 127 46.5
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 6.5e-23 111.7 114 50.9
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 6.5e-23 111.7 144 46.5
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 8.5e-23 111.3 146 49.3
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.1e-22 110.9 128 47.7
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 1.1e-22 110.9 142 43.0
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 1.9e-22 110.2 127 48.0
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 1.9e-22 110.2 130 46.9
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 2.5e-22 109.8 119 52.9
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 3.2e-22 109.4 144 45.1
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 5.5e-22 108.6 121 52.9
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 5.5e-22 108.6 127 47.2
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 2.3e-20 103.2 127 44.1
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 2.0e-19 100.1 120 45.8
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 2.6e-19 99.8 93 52.7
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 7.0e-17 91.7 83 54.2
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 4.5e-16 89.0 117 42.7
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.1e-14 84.3 118 39.8
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 9.4e-14 81.3 110 44.5
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 1.2e-13 80.9 117 41.9
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 2.1e-13 80.1 92 48.9
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 5.2e-12 75.5 113 38.9
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.0e-11 73.6 118 41.5
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 3.4e-11 72.8 104 38.5


User provided reference genes

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