Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.9e-136 489.2 248 100.0
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 9.4e-104 380.6 223 84.3
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 9.4e-104 380.6 223 82.1
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 2.7e-103 379.0 223 84.3
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.7e-103 379.0 253 75.1
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 6.8e-102 374.4 218 82.6
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 7.5e-101 370.9 215 83.7
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 7.5e-101 370.9 215 83.7
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.7e-100 369.8 223 80.7
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 6.3e-100 367.9 223 79.4
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.4e-99 366.7 223 80.3
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 1.8e-99 366.3 224 79.9
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 2.4e-99 365.9 223 79.4
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 3.1e-99 365.5 224 79.0
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 4.1e-99 365.2 223 78.9
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 7.0e-99 364.4 223 79.8
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 9.1e-99 364.0 218 79.4
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 9.1e-99 364.0 215 80.5
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 2.7e-98 362.5 223 78.9
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 3.5e-98 362.1 225 79.1
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 1.0e-97 360.5 223 77.6
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 2.9e-97 359.0 224 79.9
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.9e-97 359.0 223 78.0
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.0e-97 358.2 222 77.9
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 6.6e-97 357.8 260 71.5
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 6.6e-97 357.8 260 71.5
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.5e-96 356.7 216 80.6
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.5e-96 356.7 223 77.6
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.9e-96 356.3 223 76.7
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 2.5e-96 355.9 223 76.2
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 5.5e-96 354.8 224 75.4
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.2e-95 353.6 218 78.0
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.2e-95 353.6 223 78.9
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.1e-95 352.8 216 80.1
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 2.8e-95 352.4 216 78.7
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.1e-95 351.3 224 77.2
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 8.0e-95 350.9 218 77.1
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.0e-94 350.5 217 77.4
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.4e-94 350.1 216 78.7
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.4e-94 350.1 224 76.8
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.8e-94 349.7 223 74.4
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.8e-94 349.7 224 76.8
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 2.3e-94 349.4 218 76.1
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 3.0e-94 349.0 237 74.7
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 5.2e-94 348.2 216 78.7
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 5.7e-93 344.7 224 78.1
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 7.5e-93 344.4 251 70.9
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.7e-92 343.2 215 73.5
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.8e-92 342.4 223 71.7
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 3.7e-92 342.0 216 76.9
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 7.0e-91 337.8 215 77.2
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.2e-90 337.0 225 76.9
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.2e-90 337.0 223 74.9
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 2.0e-90 336.3 223 72.2
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.7e-90 335.9 223 71.7
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.5e-90 335.5 225 74.2
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 3.5e-90 335.5 223 71.7
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 5.9e-90 334.7 224 74.6
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 1.0e-89 334.0 215 74.4
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.0e-89 334.0 218 72.9
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 6.6e-89 331.3 223 74.0
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 8.6e-89 330.9 215 74.0
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 8.6e-89 330.9 215 74.0
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 8.6e-89 330.9 219 71.2
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.1e-88 330.5 215 72.6
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.1e-88 330.5 215 73.0
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.1e-88 330.5 236 70.3
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 9.5e-88 327.4 215 73.0
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 4.7e-87 325.1 224 73.7
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.4e-86 323.6 226 67.7
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 1.8e-86 323.2 223 70.9
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 3.1e-86 322.4 218 71.1
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 4.0e-86 322.0 217 71.4
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.2e-86 321.6 218 69.3
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.2e-85 320.5 265 61.9
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.5e-85 320.1 221 69.2
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.4e-85 318.5 215 74.0
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.8e-85 317.4 221 66.5
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 1.7e-84 316.6 210 72.9
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 2.2e-84 316.2 215 69.8
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.4e-84 314.7 215 69.3
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 6.4e-84 314.7 215 69.3
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.4e-84 314.7 215 69.3
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.1e-83 313.9 210 72.4
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.1e-83 313.9 215 69.8
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 4.1e-83 312.0 215 68.4
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 7.0e-83 311.2 216 67.1
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.0e-82 309.7 252 63.5
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.7e-82 309.3 202 72.8
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 3.5e-82 308.9 217 66.8
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 1.0e-81 307.4 215 67.9
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 6.6e-81 304.7 217 65.9
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 8.6e-81 304.3 217 66.4
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 4.3e-80 302.0 216 69.4
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 4.0e-78 295.4 216 64.4
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 4.0e-78 295.4 202 69.3
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 8.3e-76 287.7 215 61.9
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.1e-75 287.3 215 63.3
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-74 283.5 215 64.7
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.8e-74 281.2 217 62.7
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 5.1e-73 278.5 216 64.4
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.1e-72 277.3 180 73.3
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 4.3e-72 275.4 218 63.8
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 2.8e-71 272.7 170 80.0
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 3.1e-70 269.2 218 56.0
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.0e-69 266.5 170 76.5
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 4.4e-69 265.4 225 55.1
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.4e-67 259.6 169 75.1
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 2.4e-67 259.6 219 54.8
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 9.2e-67 257.7 189 65.6
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.9e-64 250.0 173 72.3
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-64 250.0 215 59.1
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 9.5e-64 247.7 189 67.2
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 9.5e-64 247.7 168 71.4
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 9.5e-64 247.7 168 71.4
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.2e-63 245.0 185 64.9
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.1e-62 242.7 224 58.0
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.5e-61 240.4 141 83.0
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.5e-61 240.4 213 50.2
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.4e-61 238.8 221 56.6
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.7e-60 236.9 210 51.9
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 6.4e-60 235.0 141 81.6
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.8e-58 228.0 188 60.6
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-57 227.3 214 54.7
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 2.3e-57 226.5 142 78.9
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 3.3e-56 222.6 211 53.6
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 7.3e-56 221.5 167 65.3
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.2e-53 214.2 159 66.0
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 7.6e-53 211.5 211 49.8
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 2.2e-52 209.9 171 60.8
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 2.4e-51 206.5 208 44.7
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 2.1e-50 203.4 151 66.2
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-49 200.7 143 67.8
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 5.6e-48 195.3 127 75.6
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 1.6e-47 193.7 189 47.1
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.4e-46 189.9 166 57.2
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.4e-46 189.9 203 50.2
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 7.6e-45 184.9 145 63.4
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 7.6e-45 184.9 218 39.4
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.6e-42 177.2 131 66.4
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 8.7e-41 171.4 128 69.5
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 5.6e-40 168.7 166 53.6
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.2e-37 161.0 123 64.2
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.9e-36 156.4 133 58.6
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.8e-36 156.0 135 56.3
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.6e-34 149.1 117 62.4
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.8e-30 137.1 101 65.3
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 8.2e-23 111.7 91 62.6
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.3e-22 109.0 143 43.4
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.7e-20 104.0 81 60.5
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 2.5e-19 100.1 81 63.0
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.5e-19 100.1 83 63.9
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 4.2e-19 99.4 52 82.7
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 9.4e-19 98.2 66 65.2
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 8.2e-15 85.1 67 65.7
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.4e-14 84.3 52 69.2
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 4.2e-11 72.8 162 28.4
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 4.2e-11 72.8 97 44.3
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.2e-11 72.8 106 40.6
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 6.1e-10 68.9 55 63.6
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 6.1e-10 68.9 55 63.6
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 1.0e-09 68.2 54 64.8


User provided reference genes

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