Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1377.5 711 100.0
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1251.9 699 90.7
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1250.3 699 90.7
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1248.0 698 91.4
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1245.7 699 90.6
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1243.8 699 90.3
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1239.9 698 90.0
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1239.6 699 90.3
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1234.2 699 90.3
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1232.6 702 90.3
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1230.7 692 90.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1228.8 699 89.6
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1228.4 697 89.2
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1227.2 699 89.3
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1227.2 697 89.2
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1226.8 699 88.8
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1226.5 693 90.0
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1224.9 697 89.2
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1218.8 699 88.4
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1218.4 700 88.6
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1217.2 691 89.6
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1217.2 697 88.5
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1216.1 691 89.4
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1215.7 691 89.4
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1213.7 688 90.4
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1213.7 697 87.8
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1213.4 703 88.1
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1213.0 699 87.6
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1210.7 699 88.7
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1208.4 699 87.8
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1205.7 688 89.0
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1204.1 687 88.9
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1204.1 687 88.9
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1204.1 687 88.9
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1202.2 697 88.1
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1201.4 696 87.2
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1198.0 701 86.2
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1196.0 694 88.2
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1193.7 715 86.2
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1193.3 701 85.9
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1193.3 701 85.9
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1192.9 701 86.2
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1192.9 710 86.2
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1192.6 701 85.9
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1192.2 701 86.0
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1192.2 701 85.7
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1192.2 701 85.7
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1192.2 694 87.9
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1191.4 697 87.9
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1190.6 705 87.2
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1190.3 702 85.9
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1189.9 703 86.6
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1189.1 688 88.7
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1189.1 671 90.6
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1187.9 694 86.5
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1185.2 701 85.3
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1184.9 697 86.2
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1184.9 727 83.4
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1184.1 689 87.4
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1179.5 690 87.1
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1179.1 722 84.3
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1178.3 685 88.2
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1177.5 690 87.0
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1175.6 694 85.6
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1171.8 692 87.6
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1171.8 687 87.3
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1169.5 688 87.6
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 696 84.9
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1167.1 693 84.8
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 711 83.7
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 691 84.9
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1165.2 701 84.5
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1164.1 688 85.3
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1162.9 697 85.5
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 698 85.2
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 698 84.0
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 697 84.5
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 715 83.5
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1154.8 697 84.9
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 694 83.6
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 699 85.1
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 694 83.4
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1145.2 689 84.2
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1139.0 740 78.9
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1138.6 692 83.2
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1137.9 743 79.8
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 696 83.2
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 668 85.5
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1130.2 686 84.3
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1128.2 769 76.5
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1125.2 696 80.9
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1117.1 669 84.5
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1109.7 704 81.2
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1102.4 740 77.8
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1099.3 697 79.8
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1081.2 687 80.2
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1077.8 666 83.2
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 3.7e-310 1067.8 744 74.3
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.7e-307 1058.9 716 76.0
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 5.2e-296 1020.8 614 84.9
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.0e-291 1006.5 631 83.5
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.1e-289 998.8 591 85.3
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 5.7e-287 990.7 710 70.6
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 5.7e-287 990.7 710 70.6
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.0e-280 969.9 700 68.7
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 4.2e-274 948.0 691 69.3
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.2e-273 946.4 584 80.7
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 2.8e-273 945.3 700 68.3
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.5e-271 939.5 683 74.4
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 8.0e-265 917.1 509 91.6
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.0e-264 916.8 566 79.9
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.4e-264 916.4 589 80.0
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.4e-261 906.4 554 83.0
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.7e-251 872.8 676 69.5
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.8e-248 862.8 491 89.6
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 5.6e-234 814.7 681 59.9
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 3.8e-222 775.4 675 57.6
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.9e-205 719.9 441 81.0
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.1e-205 718.0 453 83.7
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.3e-157 559.3 328 83.5
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.4e-155 554.3 756 43.0
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 3.2e-144 516.5 787 37.6
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.7e-135 486.9 280 86.4
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 4.9e-129 466.1 273 83.9
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 2.3e-126 457.2 269 85.9
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.2e-119 434.9 359 62.1
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 1.6e-116 424.5 744 36.0
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.4e-115 421.4 237 89.9
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.7e-113 414.5 233 87.6
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 3.2e-112 410.2 253 80.6
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.3e-109 399.8 259 80.7
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.6e-108 397.9 251 82.5
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.8e-81 307.0 178 81.5
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 2.2e-76 291.2 193 80.8
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 2.8e-76 290.8 215 70.2
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.9e-72 278.1 148 90.5
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.6e-71 273.9 195 72.8
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 4.4e-61 240.4 192 70.8
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 6.3e-60 236.5 155 67.1
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.0e-57 229.2 167 71.9
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 1.9e-56 224.9 180 71.7
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 3.2e-56 224.2 214 60.7
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 4.7e-55 220.3 156 70.5
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 5.5e-48 196.8 122 82.8
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 9.5e-48 196.1 114 88.6
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.6e-47 195.3 488 28.1
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 7.0e-43 179.9 111 86.5
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 1.3e-41 175.6 104 84.6
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.7e-39 167.2 111 75.7
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 1.4e-30 139.0 100 72.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 5.2e-30 137.1 143 55.9
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 7.5e-29 133.3 100 70.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 7.5e-29 133.3 100 70.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.1e-27 129.4 73 89.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.4e-27 127.1 99 67.7
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.0e-26 125.2 120 58.3
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.1e-24 119.4 86 69.8
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 6.8e-22 110.2 63 82.5
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 7.5e-21 106.7 69 72.5
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 2.2e-20 105.1 77 70.1
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 2.2e-20 105.1 59 86.4
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.4e-19 101.7 57 86.0
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.7e-17 95.5 93 54.8
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.5e-16 92.4 65 73.8
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.1e-14 86.3 50 82.0
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 9.9e-13 79.7 78 53.8
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 9.9e-13 79.7 70 60.0
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.6e-10 72.4 40 90.0
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.1e-10 72.0 44 77.3


User provided reference genes

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