Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc215.7 Carica papaya HOM05D003353 ORTHO05D003751 0.0e+00 2045.4 1013 100.0
Thecc.04G008000 Theobroma cacao HOM05D003353 ORTHO05D003751 0.0e+00 1079.7 1035 57.9
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 2.0e-301 1039.3 1033 54.3
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 9.9e-301 1036.9 1035 54.5
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 1.3e-300 1036.6 1039 56.8
QL02p076799 Quercus lobata HOM05D003353 ORTHO05D003751 1.1e-299 1033.5 1053 54.6
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 4.8e-295 1018.1 1038 55.9
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 2.2e-292 1009.2 1037 53.8
Atru.chr6.2192 Acer truncatum HOM05D003353 ORTHO05D003751 8.4e-292 1007.3 1020 54.9
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 1.6e-290 1003.0 1036 55.3
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 3.0e-289 998.8 1036 55.1
Haze_14661 Corylus avellana HOM05D003353 ORTHO05D003751 4.8e-287 991.5 1092 51.6
COL.COLO4_28936 Corchorus olitorius HOM05D003353 ORTHO05D003751 1.8e-286 989.6 1035 55.4
Cfa007435 Carpinus fangiana HOM05D003353 ORTHO05D003751 5.8e-285 984.6 1041 53.5
FvH4_6g50560 Fragaria vesca HOM05D003353 ORTHO05D003751 4.9e-284 981.5 1037 51.9
FAN14G4206 Fragaria x ananassa HOM05D003353 ORTHO05D003751 1.2e-282 976.9 1037 51.6
FAN02G2799 Fragaria x ananassa HOM05D003353 ORTHO05D003751 6.9e-278 961.1 1035 51.2
FAN09G4608 Fragaria x ananassa HOM05D003353 ORTHO05D003751 1.3e-273 946.8 1034 50.7
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 1.1e-272 943.7 1018 51.6
CiPaw.04G024200 Carya illinoinensis HOM05D003353 ORTHO05D003751 7.4e-272 941.0 1033 51.7
THA.LOC104822384 Tarenaya hassleriana HOM05D003353 ORTHO05D003751 7.4e-272 941.0 1031 50.3
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 3.1e-270 935.6 1049 51.3
Manes.15G182800 Manihot esculenta HOM05D003353 ORTHO05D003751 8.5e-268 927.5 1059 50.4
TWI36G0997 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 1.9e-267 926.4 1029 51.5
TAR371G0580 Trochodendron aralioides HOM05D003353 ORTHO05D003751 3.2e-267 925.6 1039 50.9
TWI12G0214 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 2.0e-261 906.4 1024 50.5
TAR629G0276 Trochodendron aralioides HOM05D003353 ORTHO05D003751 5.5e-259 898.3 1029 48.8
RcHm_v2.0_Chr2g0171081 Rosa chinensis HOM05D003353 ORTHO05D003751 7.2e-259 897.9 923 53.3
Lj2g0012220 Lotus japonicus HOM05D003353 ORTHO05D003751 5.1e-257 891.7 1018 49.4
Aa31LG5G10560 Aethionema arabicum HOM05D003353 ORTHO05D003751 4.8e-255 885.2 1043 48.6
AT3G01460 Arabidopsis thaliana HOM05D003353 ORTHO05D003751 3.5e-253 879.0 1036 47.6
AL3G10710 Arabidopsis lyrata HOM05D003353 ORTHO05D003751 1.0e-252 877.5 1033 47.5
Carub.0003s0064 Capsella rubella HOM05D003353 ORTHO05D003751 3.7e-247 859.0 1036 46.2
Potri.017G072580 Populus trichocarpa HOM05D003353 ORTHO05D003751 4.8e-247 858.6 1015 49.0
Sp3g00610 Schrenkiella parvula HOM05D003353 ORTHO05D003751 2.4e-246 856.3 1034 47.4
GSVIVG01032492001 Vitis vinifera HOM05D003353 ORTHO05D003751 5.5e-243 845.1 995 47.7
Psat1g059480 Pisum sativum HOM05D003353 ORTHO05D003751 1.8e-241 840.1 1016 47.7
Thhalv10019872m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 2.3e-241 839.7 1036 46.8
Thhalv10022520m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 2.6e-240 836.3 1021 46.9
Phvul.004G017600 Phaseolus vulgaris HOM05D003353 ORTHO05D003751 5.7e-240 835.1 1019 48.0
BcaB04g21418 Brassica carinata HOM05D003353 ORTHO05D003751 2.8e-239 832.8 1013 47.0
arahy.Tifrunner.gnm1.ann1.S45US4 Arachis hypogaea HOM05D003353 ORTHO05D003751 3.1e-238 829.3 1039 47.8
Glyma.19G010200 Glycine max HOM05D003353 ORTHO05D003751 3.1e-238 829.3 1006 48.2
Dinv35052 Davidia involucrata HOM05D003353 ORTHO05D003751 4.1e-238 828.9 966 48.8
BcaC09g47659 Brassica carinata HOM05D003353 ORTHO05D003751 2.7e-237 826.2 1030 46.2
BolC1t05958H Brassica oleracea HOM05D003353 ORTHO05D003751 2.2e-236 823.2 1030 46.1
Glyma.13G170000 Glycine max HOM05D003353 ORTHO05D003751 5.0e-236 822.0 1019 48.3
ClCG10G014330 Citrullus lanatus HOM05D003353 ORTHO05D003751 5.5e-235 818.5 1026 46.9
BraA01t04666Z Brassica rapa HOM05D003353 ORTHO05D003751 8.0e-234 814.7 1030 46.2
BNapus_Darmor_BZH_scaffold_133p00020 Brassica napus HOM05D003353 ORTHO05D003751 1.4e-233 813.9 1030 46.2
Nn3g16906 Nelumbo nucifera HOM05D003353 ORTHO05D003751 6.8e-233 811.6 1025 45.9
CsaV3_3G042270 Cucumis sativus L. HOM05D003353 ORTHO05D003751 8.8e-233 811.2 1028 45.8
Sabra17G0060500 Salix brachista HOM05D003353 ORTHO05D003751 2.2e-231 806.6 1012 47.2
C09p75140 Brassica napus HOM05D003353 ORTHO05D003751 1.1e-230 804.3 1033 45.9
BolC5t35150H Brassica oleracea HOM05D003353 ORTHO05D003751 1.4e-230 803.9 1030 45.6
Lalb_Chr02g0160231 Lupinus albus HOM05D003353 ORTHO05D003751 4.5e-229 798.9 1016 47.6
Medtr6g007650 Medicago truncatula HOM05D003353 ORTHO05D003751 5.9e-229 798.5 1026 46.8
Sed0022584 Sechium edule HOM05D003353 ORTHO05D003751 1.0e-228 797.7 1041 46.2
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 6.6e-228 795.0 1033 45.9
A05p44550 Brassica napus HOM05D003353 ORTHO05D003751 8.9e-225 784.6 1010 45.8
BraA05t23202Z Brassica rapa HOM05D003353 ORTHO05D003751 1.5e-224 783.9 1007 45.6
Lalb_Chr06g0176091 Lupinus albus HOM05D003353 ORTHO05D003751 3.4e-224 782.7 1037 46.5
Lalb_Chr21g0319411 Lupinus albus HOM05D003353 ORTHO05D003751 3.5e-221 772.7 1014 46.4
TPR.G2281 Trifolium pratense HOM05D003353 ORTHO05D003751 4.0e-217 759.2 1013 45.5
PGR142G1415 Punica granatum HOM05D003353 ORTHO05D003751 2.4e-206 723.4 1013 43.2
MELO3C009946.2 Cucumis melo HOM05D003353 ORTHO05D003751 2.7e-205 719.9 1025 42.7
VMungo0464G0152 Vigna mungo HOM05D003353 ORTHO05D003751 4.7e-202 709.1 845 48.8
EL10Ac2g03352 Beta vulgaris HOM05D003353 ORTHO05D003751 3.7e-199 699.5 1024 43.4
Eucgr.I01818 Eucalyptus grandis HOM05D003353 ORTHO05D003751 9.2e-198 694.9 847 48.4
Hund12469 Selenicereus undatus HOM05D003353 ORTHO05D003751 1.3e-196 691.0 1023 42.5
Dinv24865 Davidia involucrata HOM05D003353 ORTHO05D003751 1.1e-187 661.4 1048 41.9
Aqoxy3G02993 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 2.1e-186 657.1 989 41.3
AUR62042408 Chenopodium quinoa HOM05D003353 ORTHO05D003751 2.4e-182 643.7 1022 41.4
Dinv15308 Davidia involucrata HOM05D003353 ORTHO05D003751 3.2e-182 643.3 1025 40.9
AUR62032109 Chenopodium quinoa HOM05D003353 ORTHO05D003751 9.6e-179 631.7 1021 41.0
PSO063G6215 Papaver somniferum HOM05D003353 ORTHO05D003751 2.4e-174 617.1 1039 37.4
PSO832G1186 Papaver somniferum HOM05D003353 ORTHO05D003751 1.6e-173 614.4 1039 37.2
Lj7A591T75 Lonicera japonica HOM05D003353 ORTHO05D003751 3.3e-171 606.7 817 44.8
Rhsim10G0023100 Rhododendron simsii HOM05D003353 ORTHO05D003751 1.4e-166 591.3 989 39.2
ATR0691G050 Amborella trichopoda HOM05D003353 ORTHO05D003751 8.7e-164 582.0 1051 37.0
BNapus_Darmor_BZH_scaffold_119p00030 Brassica napus HOM05D003353 ORTHO05D003751 3.1e-161 573.5 599 51.9
BNapus_Darmor_BZH_scaffold_97p00400 Brassica napus HOM05D003353 ORTHO05D003751 3.1e-161 573.5 599 51.9
HPP92_008854 Vanilla planifolia HOM05D003353 ORTHO05D003751 8.2e-154 548.9 1093 35.5
DCAR_021679 Daucus carota HOM05D003353 ORTHO05D003751 1.1e-150 538.5 998 37.2
CDE10G0339 Ceratophyllum demersum HOM05D003353 ORTHO05D003751 2.0e-147 527.7 990 36.4
CSS0024625 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 8.2e-146 522.3 946 38.4
Ciclev10014026m.g Citrus clementina HOM05D003353 ORTHO05D003751 1.2e-144 518.5 488 57.4
Manes.12G029600 Manihot esculenta HOM05D003353 ORTHO05D003751 3.9e-140 503.4 901 37.6
GSVIVG01020232001 Vitis vinifera HOM05D003353 ORTHO05D003751 4.5e-136 490.0 609 45.3
Actinidia15041 Actinidia chinensis HOM05D003353 ORTHO05D003751 8.5e-135 485.7 889 36.3
Cc11_g14600 Coffea canephora HOM05D003353 ORTHO05D003751 8.5e-135 485.7 1011 35.9
QL03p061451 Quercus lobata HOM05D003353 ORTHO05D003751 2.5e-134 484.2 908 35.9
Rhsim12G0121100 Rhododendron simsii HOM05D003353 ORTHO05D003751 7.2e-134 482.6 931 36.7
DCAR_031098 Daucus carota HOM05D003353 ORTHO05D003751 1.2e-131 475.3 996 33.6
Atru.chr11.2012 Acer truncatum HOM05D003353 ORTHO05D003751 1.5e-131 474.9 726 41.5
SHI25551 Sapria himalayana HOM05D003353 ORTHO05D003751 8.2e-130 469.2 627 43.9
Oeu056394.4 Olea europaea HOM05D003353 ORTHO05D003751 4.1e-129 466.8 847 36.5
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 1.6e-125 454.9 890 35.3
Haze_12169 Corylus avellana HOM05D003353 ORTHO05D003751 1.0e-124 452.2 915 35.0
SEGI_35053 Sequoiadendron giganteum HOM05D003353 ORTHO05D003751 1.4e-124 451.8 1055 32.4
CAN.G1420.2 Capsicum annuum HOM05D003353 ORTHO05D003751 3.0e-124 450.7 876 36.2
Peaxi162Scf00338g00002 Petunia axillaris HOM05D003353 ORTHO05D003751 3.4e-123 447.2 1029 33.6
Ciclev10030471m.g Citrus clementina HOM05D003353 ORTHO05D003751 4.4e-123 446.8 874 36.4
Actinidia06029 Actinidia chinensis HOM05D003353 ORTHO05D003751 2.7e-120 437.6 494 49.0
Sopen05g001650 Solanum pennellii HOM05D003353 ORTHO05D003751 2.7e-120 437.6 948 33.4
Lj6C805G5 Lonicera japonica HOM05D003353 ORTHO05D003751 8.5e-119 432.6 657 39.9
Nitab4.5_0002579g0080 Nicotiana tabacum HOM05D003353 ORTHO05D003751 4.2e-118 430.3 819 36.0
DCAR_007093 Daucus carota HOM05D003353 ORTHO05D003751 4.7e-117 426.8 1013 32.7
MSTRG.7892 Avicennia marina HOM05D003353 ORTHO05D003751 8.0e-117 426.0 898 34.2
SGA_v2.0_scaffold165G38252 Striga asiatica HOM05D003353 ORTHO05D003751 1.8e-116 424.9 804 35.2
Nitab4.5_0000113g0210 Nicotiana tabacum HOM05D003353 ORTHO05D003751 2.3e-116 424.5 814 35.3
ECA233G2073 Erigeron canadensis HOM05D003353 ORTHO05D003751 8.8e-116 422.5 965 33.6
HanXRQChr12g0368561 Helianthus annuus HOM05D003353 ORTHO05D003751 1.3e-114 418.7 958 33.5
Migut.L01407 Erythranthe guttata HOM05D003353 ORTHO05D003751 2.0e-112 411.4 813 34.3
Lsat_1_v5_gn_8_157680 Lactuca sativa HOM05D003353 ORTHO05D003751 2.1e-109 401.4 947 32.2
Sc06g0001590 Simmondsia chinensis HOM05D003353 ORTHO05D003751 4.4e-107 393.7 500 45.6
vmacro05815 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 2.9e-106 391.0 441 49.2
vmacro16257 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 3.0e-103 380.9 833 33.4
Ah.16g106640 Amaranthus hybridus HOM05D003353 ORTHO05D003751 5.2e-100 370.2 491 43.6
ECA199G0007 Erigeron canadensis HOM05D003353 ORTHO05D003751 2.7e-88 331.3 745 31.5
Lsat_1_v5_gn_4_6960 Lactuca sativa HOM05D003353 ORTHO05D003751 4.7e-85 320.5 764 29.5
HanXRQChr17g0569791 Helianthus annuus HOM05D003353 ORTHO05D003751 6.8e-84 316.6 734 30.7
CSS0032060 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 2.0e-83 315.1 824 31.9
FAN05G2549 Fragaria x ananassa HOM05D003353 ORTHO05D003751 5.8e-83 313.5 308 54.2
FAN09G2719 Fragaria x ananassa HOM05D003353 ORTHO05D022659 5.1e-79 300.4 307 51.8
Zm00001eb206240 Zea mays HOM05D003353 ORTHO05D003751 2.6e-67 261.5 458 34.3
Lsat_1_v5_gn_4_182161 Lactuca sativa HOM05D003353 ORTHO05D003751 2.4e-60 238.4 604 31.0
Lsat_1_v5_gn_4_181301 Lactuca sativa HOM05D003353 ORTHO05D003751 2.2e-58 231.9 604 31.3
Oeu003445.1 Olea europaea HOM05D003353 ORTHO05D003751 7.9e-56 223.4 292 45.2
Sc06g0001600 Simmondsia chinensis HOM05D003353 ORTHO05D003751 1.3e-53 216.1 389 37.0
TPR.G2296 Trifolium pratense HOM05D003353 ORTHO05D003751 3.8e-50 204.5 234 52.1
unitig_26.g10338 Utricularia gibba HOM05D003353 ORTHO05D003751 4.8e-45 187.6 744 24.6
Mapoly0064s0056 Marchantia polymorpha HOM05D003353 ORTHO05D003751 5.9e-43 180.6 854 24.9
Carub.0001s0468 Capsella rubella HOM05D003353 ORTHO05D003751 3.0e-39 168.3 218 42.7
Actinidia13514 Actinidia chinensis HOM05D003353 ORTHO05D003751 1.7e-37 162.5 634 27.3
VMungo0464G0255 Vigna mungo HOM05D003353 ORTHO05D003751 1.7e-37 162.5 160 55.6
SHI25555 Sapria himalayana HOM05D003353 ORTHO05D003751 7.7e-35 153.7 148 53.4
Ca_04206_v3 Cicer arietinum L. HOM05D003353 ORTHO05D003751 1.4e-33 149.4 163 50.3
Carub.0001s0467 Capsella rubella HOM05D003353 ORTHO05D003751 1.8e-31 142.5 185 44.3
Lj7C591T5 Lonicera japonica HOM05D003353 ORTHO05D003751 2.5e-25 122.1 176 42.0
Aqoxy3G00985 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 4.8e-21 107.8 117 47.9
Pp3c5_19640 Physcomitrium patens HOM05D003353 ORTHO05D003751 4.8e-21 107.8 318 28.0
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 1.2e-19 103.2 315 27.9
AagrBONN_evm.TU.Sc2ySwM_228.4332 Anthoceros agrestis HOM05D003353 ORTHO05D003751 3.5e-19 101.7 472 24.2
Lalb_Chr02g0160031 Lupinus albus HOM05D003353 ORTHO05D003751 8.5e-18 97.1 120 50.0
Hma1.2p1_0802F.1_g220460 Hydrangea macrophylla HOM05D003353 ORTHO05D003751 6.1e-16 90.9 179 38.0
Pp3c6_8120 Physcomitrium patens HOM05D003353 ORTHO05D003751 8.0e-16 90.5 126 38.9
Pp3c2_35750 Physcomitrium patens HOM05D003353 ORTHO05D003751 6.3e-13 80.9 121 34.7
QL05p070069 Quercus lobata HOM05D003353 ORTHO05D003751 2.4e-12 79.0 157 38.9
Nn2g15375 Nelumbo nucifera HOM05D003353 ORTHO05D003751 7.0e-12 77.4 101 46.5
HanXRQChr09g0266041 Helianthus annuus HOM05D003353 ORTHO05D003751 3.5e-11 75.1 266 26.3
ECA232G4683 Erigeron canadensis HOM05D003353 ORTHO05D003751 1.1e-09 70.1 70 45.7
Dinv33502 Davidia involucrata HOM05D003353 ORTHO05D003751 1.2e-08 66.6 97 41.2
Os02g0192300 Oryza sativa ssp. japonica HOM05D003353 ORTHO05D003751 4.7e-08 64.7 96 36.5
Migut.H00131 Erythranthe guttata HOM05D003353 ORTHO05D003751 4.0e-07 61.6 120 36.7
Migut.H00132 Erythranthe guttata HOM05D003353 ORTHO05D003751 3.4e-06 58.5 120 36.7


User provided reference genes

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