Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc212.1 Carica papaya HOM05D001670 ORTHO05D002980 1.0e-149 533.5 287 100.0
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 1.3e-96 357.1 279 71.0
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 7.1e-95 351.3 280 69.3
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 1.0e-93 347.4 279 69.2
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 5.1e-93 345.1 280 68.9
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 1.3e-91 340.5 279 69.5
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.6e-91 340.1 279 69.5
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 1.1e-90 337.4 279 68.8
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 3.4e-89 332.4 283 68.6
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 1.7e-88 330.1 279 68.8
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.2e-88 329.7 281 65.8
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 2.2e-88 329.7 281 65.5
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 1.4e-87 327.0 279 66.7
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 2.4e-87 326.2 279 68.5
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.4e-87 326.2 281 64.8
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 2.4e-87 326.2 279 68.8
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 9.3e-87 324.3 279 67.7
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 9.3e-87 324.3 281 65.8
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.6e-86 323.6 279 68.1
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.6e-86 323.6 279 68.1
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.1e-86 323.2 279 68.1
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.7e-86 322.8 279 68.1
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 3.5e-86 322.4 279 67.0
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 8.7e-85 317.8 279 66.3
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 8.7e-85 317.8 279 66.3
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 1.5e-84 317.0 279 65.6
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.5e-84 316.2 279 65.9
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 4.3e-84 315.5 279 65.9
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 9.6e-84 314.3 279 66.3
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 3.7e-83 312.4 279 64.9
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 1.8e-82 310.1 279 64.5
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 3.1e-82 309.3 279 65.9
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 4.0e-82 308.9 279 63.8
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.6e-81 306.2 306 61.8
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 2.6e-81 306.2 279 65.2
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.5e-81 305.4 306 61.4
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 4.5e-81 305.4 279 65.9
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 1.3e-80 303.9 279 64.9
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.4e-79 300.4 279 62.7
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 1.9e-79 300.1 279 64.9
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 4.2e-79 298.9 279 62.7
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 1.2e-78 297.4 279 63.8
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.2e-78 297.4 283 62.9
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 8.7e-77 291.2 280 61.4
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 8.7e-77 291.2 280 61.4
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 8.7e-77 291.2 279 63.1
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 1.1e-76 290.8 280 61.4
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 1.9e-76 290.0 279 63.1
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 1.9e-76 290.0 297 59.9
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 3.3e-76 289.3 279 62.4
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 9.6e-76 287.7 279 62.7
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 1.3e-75 287.3 283 59.7
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 1.6e-75 287.0 279 60.9
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 4.8e-75 285.4 279 62.0
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 6.2e-75 285.0 280 59.6
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 1.1e-74 284.3 279 60.6
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 1.4e-74 283.9 280 59.3
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 2.4e-74 283.1 283 59.0
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 3.1e-74 282.7 279 61.6
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 5.3e-74 282.0 282 58.5
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 9.0e-74 281.2 280 59.3
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 9.0e-74 281.2 280 59.3
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 5.8e-73 278.5 308 56.8
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 1.3e-72 277.3 279 61.3
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 2.9e-72 276.2 308 56.8
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 3.8e-72 275.8 281 58.7
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 5.5e-71 271.9 280 58.2
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 9.3e-71 271.2 282 57.8
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 9.3e-71 271.2 282 60.3
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 1.2e-70 270.8 280 57.5
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 1.2e-70 270.8 282 56.7
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 1.6e-70 270.4 282 57.8
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 1.6e-70 270.4 282 57.8
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 4.6e-70 268.9 279 60.6
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 7.9e-70 268.1 279 57.3
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 2.3e-69 266.5 282 57.1
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 5.1e-69 265.4 281 57.7
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 1.1e-68 264.2 281 57.7
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 1.9e-68 263.5 284 55.6
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.5e-68 263.1 283 56.2
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 2.5e-68 263.1 281 57.3
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 2.5e-68 263.1 281 57.3
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 3.3e-68 262.7 281 57.3
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 7.4e-68 261.5 280 56.1
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 7.4e-68 261.5 279 56.3
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 1.3e-67 260.8 280 57.1
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 1.3e-67 260.8 281 57.3
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 2.2e-67 260.0 279 57.0
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.2e-67 260.0 283 56.5
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 3.7e-67 259.2 281 56.9
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 3.7e-67 259.2 281 56.9
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 8.2e-67 258.1 281 56.6
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 8.2e-67 258.1 281 56.2
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 1.4e-66 257.3 279 58.8
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 5.3e-66 255.4 283 55.5
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 2.6e-65 253.1 284 54.2
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 2.6e-65 253.1 284 53.5
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 5.0e-64 248.8 284 55.6
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 5.0e-64 248.8 284 55.6
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 2.5e-63 246.5 284 54.9
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 2.5e-63 246.5 284 54.9
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 3.2e-63 246.1 279 53.0
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 4.2e-63 245.7 284 55.3
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 9.4e-63 244.6 281 55.2
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 2.7e-62 243.0 283 54.4
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 7.9e-62 241.5 281 52.3
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 1.4e-61 240.7 282 51.8
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 1.8e-61 240.4 279 59.1
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 1.8e-61 240.4 281 53.4
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 2.3e-61 240.0 285 54.4
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 3.0e-61 239.6 282 52.1
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 6.7e-61 238.4 281 53.0
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 2.0e-60 236.9 282 51.4
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 4.3e-60 235.7 285 52.3
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 2.2e-59 233.4 284 53.2
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 2.8e-59 233.0 284 54.2
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 8.2e-59 231.5 283 51.6
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 4.1e-58 229.2 286 52.8
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 9.1e-58 228.0 288 51.7
CSS0045045 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.2e-57 227.6 296 50.0
Hma1.2p1_0341F.1_g130250 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 2.6e-57 226.5 178 70.8
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 3.4e-57 226.1 283 51.9
Haze_02721 Corylus avellana HOM05D001670 ORTHO05D002980 5.9e-57 225.3 197 68.5
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 7.7e-57 224.9 285 53.7
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 1.7e-56 223.8 284 52.5
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 2.9e-56 223.0 283 49.8
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 1.8e-53 213.8 281 52.7
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 1.1e-50 204.5 298 48.3
CDE11G1219 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 3.8e-48 196.1 290 43.8
SHI13578 Sapria himalayana HOM05D001670 ORTHO05D002980 1.4e-47 194.1 283 46.6
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 4.2e-47 192.6 286 46.2
Lj7C538T12 Lonicera japonica HOM05D001670 ORTHO05D002980 5.5e-47 192.2 228 48.2
Thecc.03G154200 Theobroma cacao HOM05D001670 ORTHO05D002980 1.0e-45 188.0 279 44.4
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 3.9e-45 186.0 279 43.4
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 6.7e-45 185.3 282 45.0
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 1.7e-40 170.6 282 43.3
A09p69240 Brassica napus HOM05D001670 ORTHO05D002980 1.1e-39 167.9 184 57.6
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 1.6e-38 164.1 279 38.0
Aqoxy1G02768 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 4.4e-36 156.0 125 64.8
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 9.7e-36 154.8 290 40.0
Actinidia12670 Actinidia chinensis HOM05D001670 ORTHO05D002980 1.3e-35 154.5 150 59.3
GSVIVG01000874001 Vitis vinifera HOM05D001670 ORTHO05D002980 4.8e-35 152.5 195 51.3
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 3.1e-34 149.8 280 40.4
BolC4t27667H Brassica oleracea HOM05D001670 ORTHO05D002980 9.1e-34 148.3 148 58.1
C04p61850 Brassica napus HOM05D001670 ORTHO05D002980 1.2e-33 147.9 148 58.1
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 1.2e-33 147.9 281 42.0
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 2.7e-33 146.7 295 39.0
BcaC02g07928 Brassica carinata HOM05D001670 ORTHO05D002980 5.9e-33 145.6 148 57.4
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 1.7e-32 144.1 282 39.0
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 2.2e-32 143.7 290 40.3
A04p24880 Brassica napus HOM05D001670 ORTHO05D002980 1.5e-31 141.0 148 56.8
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 6.8e-29 132.1 284 37.7
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 3.4e-28 129.8 285 35.8
BcaB06g28670 Brassica carinata HOM05D001670 ORTHO05D002980 1.4e-26 124.4 101 65.3
PRCOL_00002164 Prasinoderma coloniale HOM05D001670 ORTHO05D002980 3.8e-24 116.3 130 50.8
MCO11G155 Micromonas commoda HOM05D001670 ORTHO05D002980 1.9e-23 114.0 126 50.8
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 2.8e-22 110.2 111 55.0
Glyma.03G118200 Glycine max HOM05D001670 ORTHO05D002980 1.8e-21 107.5 117 53.8
Cre14.g632950 Chlamydomonas reinhardtii HOM05D001670 ORTHO05D002980 1.8e-18 97.4 121 45.5
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 7.0e-18 95.5 319 30.1
CARHR248060 Cardamine hirsuta HOM05D001670 ORTHO05D002980 9.2e-18 95.1 77 63.6
Haze_02722 Corylus avellana HOM05D001670 ORTHO05D002980 5.0e-16 89.4 51 92.2
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 7.3e-15 85.5 51 88.2
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 1.0e-13 81.6 51 82.4
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 5.2e-13 79.3 51 78.4
Actinidia20646 Actinidia chinensis HOM05D001670 ORTHO05D010670 2.0e-12 77.4 50 80.0
Actinidia00125 Actinidia chinensis HOM05D001670 ORTHO05D002980 2.6e-12 77.0 51 80.4
Actinidia20644 Actinidia chinensis HOM05D001670 ORTHO05D015800 7.5e-12 75.5 46 84.8
MELO3C028577.2 Cucumis melo HOM05D001670 ORTHO05D170256 2.0e-09 67.4 69 52.2
ECA234G2815 Erigeron canadensis HOM05D001670 ORTHO05D002980 1.3e-08 64.7 91 45.1
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 1.7e-08 64.3 77 46.8
Gohir.D11G082333 Gossypium hirsutum HOM05D001670 ORTHO05D002980 3.0e-08 63.5 54 63.0
C08p54070 Brassica napus HOM05D001670 ORTHO05D002980 1.1e-07 61.6 114 43.0
Psat0s2310g0160 Pisum sativum HOM05D002022 ORTHO05D002056 3.3e-07 60.1 48 64.6
Hma1.2p1_0169F.1_g074520 Hydrangea macrophylla HOM05D001670 ORTHO05D228139 9.5e-07 58.5 113 41.6
Cfa026075 Carpinus fangiana HOM05D001670 ORTHO05D002980 2.1e-06 57.4 132 33.3
Zm00001eb308110 Zea mays HOM05D001670 ORTHO05D002980 2.1e-06 57.4 49 57.1
Zm00001eb177620 Zea mays HOM05D001670 ORTHO05D002980 4.7e-06 56.2 52 53.8


User provided reference genes

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