Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc198.9 Carica papaya HOM05D006350 ORTHO05D007850 0.0e+00 1135.9 548 100.0
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 9.4e-205 717.2 648 58.3
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 1.2e-196 690.3 659 56.1
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 1.1e-192 677.2 654 56.6
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 2.7e-191 672.5 660 54.1
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 2.9e-190 669.1 658 54.3
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 6.5e-190 667.9 678 53.7
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 1.5e-189 666.8 678 53.8
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 5.5e-189 664.8 648 54.5
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 4.7e-188 661.8 658 54.0
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 1.8e-187 659.8 655 55.4
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 8.8e-187 657.5 660 53.9
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 4.4e-186 655.2 661 53.9
MD10G1314700 Malus domestica HOM05D006350 ORTHO05D007850 1.3e-185 653.7 668 53.4
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 6.3e-185 651.4 645 54.7
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 2.4e-184 649.4 653 54.4
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 3.1e-184 649.0 659 52.4
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 7.0e-184 647.9 650 53.7
Prupe.4G026100 Prunus persica HOM05D006350 ORTHO05D007850 7.0e-184 647.9 674 53.3
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 9.1e-184 647.5 684 52.5
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 2.7e-183 646.0 650 53.8
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 7.7e-183 644.4 650 54.0
TAR629G2651 Trochodendron aralioides HOM05D006350 ORTHO05D007850 5.0e-182 641.7 678 51.2
CANSAT80G1390 Cannabis sativa HOM05D006350 ORTHO05D007850 6.6e-182 641.3 669 52.2
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 5.5e-181 638.3 682 50.9
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 1.2e-180 637.1 645 52.9
AL6G25990 Arabidopsis lyrata HOM05D006350 ORTHO05D007850 4.7e-180 635.2 641 53.4
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 1.8e-179 633.3 652 51.4
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 1.8e-179 633.3 644 53.6
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 2.3e-179 632.9 658 53.0
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 2.3e-179 632.9 643 53.7
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 4.0e-179 632.1 641 52.9
Glyma.04G064300 Glycine max HOM05D006350 ORTHO05D007850 6.8e-179 631.3 645 52.7
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 1.2e-178 630.6 659 50.7
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 1.5e-178 630.2 637 53.1
vmacro15831 Vaccinium macrocarpon HOM05D006350 ORTHO05D007850 1.5e-178 630.2 763 48.1
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 3.4e-178 629.0 644 53.0
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 4.4e-178 628.6 595 56.1
Sp6g28900 Schrenkiella parvula HOM05D006350 ORTHO05D007850 7.5e-178 627.9 641 52.6
A03p07020 Brassica napus HOM05D006350 ORTHO05D007850 1.3e-177 627.1 641 52.4
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 1.3e-177 627.1 644 53.3
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 1.7e-177 626.7 648 52.6
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 6.3e-177 624.8 641 52.1
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 8.3e-177 624.4 654 51.7
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 1.1e-176 624.0 651 52.2
Potri.004G022500 Populus trichocarpa HOM05D006350 ORTHO05D007850 1.4e-176 623.6 657 53.6
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 5.4e-176 621.7 649 52.1
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 1.2e-175 620.5 644 52.8
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 2.7e-175 619.4 649 51.0
Aqoxy4G01993 Aquilegia oxysepala HOM05D006350 ORTHO05D007850 5.9e-175 618.2 648 50.3
AT5G15170 Arabidopsis thaliana HOM05D006350 ORTHO05D007850 7.8e-175 617.8 641 52.1
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 2.3e-174 616.3 641 52.4
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 6.6e-174 614.8 625 53.1
Carub.0006s1334 Capsella rubella HOM05D006350 ORTHO05D007850 1.5e-173 613.6 642 53.1
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 5.6e-173 611.7 673 49.9
MSTRG.15966 Avicennia marina HOM05D006350 ORTHO05D007850 9.5e-173 610.9 649 50.8
arahy.Tifrunner.gnm1.ann1.QV9JTX Arachis hypogaea HOM05D006350 ORTHO05D007850 3.6e-172 609.0 691 49.2
VMungo1215G2459 Vigna mungo HOM05D006350 ORTHO05D007850 4.7e-172 608.6 653 50.2
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 1.8e-171 606.7 643 51.5
PSO541G3631 Papaver somniferum HOM05D006350 ORTHO05D007850 4.0e-171 605.5 674 49.3
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 2.0e-170 603.2 682 48.5
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 9.8e-170 600.9 651 52.1
PSO675G5568 Papaver somniferum HOM05D006350 ORTHO05D007850 2.9e-169 599.4 669 49.2
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 1.1e-168 597.4 657 49.3
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 1.4e-168 597.0 627 52.0
Sabra04G0012300 Salix brachista HOM05D006350 ORTHO05D007850 7.3e-165 584.7 712 47.6
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 2.8e-164 582.8 654 50.2
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 1.5e-162 577.0 646 49.8
BcaB01g05074 Brassica carinata HOM05D006350 ORTHO05D007850 3.7e-161 572.4 641 49.3
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 1.1e-160 570.9 642 48.1
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 2.1e-156 556.6 623 49.9
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 2.1e-156 556.6 608 50.2
CARHR198140 Cardamine hirsuta HOM05D006350 ORTHO05D007850 6.4e-153 545.0 581 51.3
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 2.1e-151 540.0 658 47.0
FAN25G1413 Fragaria x ananassa HOM05D006350 ORTHO05D007850 1.3e-150 537.3 626 49.8
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 6.6e-150 535.0 668 45.4
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 1.9e-149 533.5 668 44.6
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 7.3e-149 531.6 620 48.4
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 5.2e-147 525.4 554 50.7
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 1.9e-144 516.9 500 53.0
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 5.4e-144 515.4 488 54.9
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.3e-140 504.2 655 45.3
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 3.4e-138 496.1 540 51.1
Cc02_g11700 Coffea canephora HOM05D006350 ORTHO05D007850 7.6e-138 495.0 440 58.9
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 1.3e-137 494.2 615 46.3
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 2.1e-135 486.9 421 58.2
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 2.0e-122 443.7 574 44.1
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 2.0e-122 443.7 517 47.6
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 2.0e-122 443.7 421 55.1
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 8.4e-121 438.3 639 41.8
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 3.7e-108 396.4 515 43.3
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 3.4e-106 389.8 687 36.5
Oeu051224.2 Olea europaea HOM05D006350 ORTHO05D007850 1.7e-105 387.5 635 39.5
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 2.0e-101 374.0 472 43.6
Lsat_1_v5_gn_1_127601 Lactuca sativa HOM05D006350 ORTHO05D000125 1.8e-99 367.5 522 43.9
Pp3c10_12100 Physcomitrium patens HOM05D006350 ORTHO05D007850 1.4e-94 351.3 627 36.8
Nn1g03636 Nelumbo nucifera HOM05D006350 ORTHO05D007850 2.6e-90 337.0 561 39.8
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 6.1e-87 325.9 300 54.3
Eucgr.L01729 Eucalyptus grandis HOM05D006350 ORTHO05D007850 2.0e-74 284.3 367 42.8
Hund21371 Selenicereus undatus HOM05D006350 ORTHO05D007850 4.4e-69 266.5 281 49.5
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 4.6e-58 229.9 133 73.7
HPP92_017615 Vanilla planifolia HOM05D006350 ORTHO05D007850 1.4e-51 208.4 160 60.0
MBI04_g30799_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 3.5e-50 203.8 376 35.9
PRCOL_00001871 Prasinoderma coloniale HOM05D006350 ORTHO05D007850 4.7e-47 193.4 393 34.1
MCO12G349 Micromonas commoda HOM05D006350 ORTHO05D007850 4.4e-45 186.8 467 30.2
SMO172G0198 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 2.9e-44 184.1 282 39.0
VMungo0251G1161 Vigna mungo HOM05D006350 ORTHO05D007850 3.6e-39 167.2 90 80.0
Dinv17831 Davidia involucrata HOM05D006350 ORTHO05D007850 6.2e-39 166.4 123 69.9
Cc02_g11710 Coffea canephora HOM05D006350 ORTHO05D007850 7.6e-37 159.5 213 45.5
Nn1g00065 Nelumbo nucifera HOM05D006350 ORTHO05D007850 9.9e-29 132.5 148 48.0
Sc05g0008890 Simmondsia chinensis HOM05D006350 ORTHO05D007850 2.2e-28 131.3 108 63.0
Cre01.g053200 Chlamydomonas reinhardtii HOM05D006350 ORTHO05D007850 2.9e-28 131.0 457 27.1
SMO198G0039 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 4.2e-27 127.1 97 60.8
unitig_748.g7138 Utricularia gibba HOM05D006350 ORTHO05D007850 7.1e-27 126.3 113 53.1
HPP92_017616 Vanilla planifolia HOM05D006350 ORTHO05D007850 7.8e-26 122.9 230 33.9
HPP92_017614 Vanilla planifolia HOM05D006350 ORTHO05D007850 1.8e-14 85.1 85 50.6
BolC3t14124H Brassica oleracea HOM05D006350 ORTHO05D007850 9.9e-13 79.3 59 62.7
C03p17100 Brassica napus HOM05D006350 ORTHO05D007850 2.9e-12 77.8 59 61.0
Pp3c20_13830 Physcomitrium patens HOM05D006350 ORTHO05D007850 1.4e-11 75.5 104 44.2
Nn1g07027 Nelumbo nucifera HOM05D006350 ORTHO05D007850 5.5e-11 73.6 74 44.6
Nn1g07028 Nelumbo nucifera HOM05D006350 ORTHO05D007850 1.6e-10 72.0 71 49.3
Cfa024753 Carpinus fangiana HOM05D006350 ORTHO05D007850 1.0e-09 69.3 143 30.1
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 7.4e-08 63.2 163 28.2
DCAR_001582 Daucus carota HOM05D006350 ORTHO05D007850 7.4e-08 63.2 84 41.7
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.6e-07 62.0 165 30.9
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.6e-07 62.0 172 30.8
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 2.8e-07 61.2 136 30.9
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 4.8e-07 60.5 142 31.0
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 4.8e-07 60.5 142 31.0
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 4.8e-07 60.5 204 25.0
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 4.8e-07 60.5 170 30.0
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 6.2e-07 60.1 145 26.9
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 8.1e-07 59.7 203 24.1
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 8.1e-07 59.7 161 28.6
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 8.1e-07 59.7 165 26.7
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 1.8e-06 58.5 146 27.4
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 1.8e-06 58.5 145 28.3
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 1.8e-06 58.5 198 23.7
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 1.8e-06 58.5 135 31.1
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 2.4e-06 58.2 202 24.3
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 2.4e-06 58.2 147 26.5
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 3.1e-06 57.8 136 30.1
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 3.1e-06 57.8 149 28.9
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 3.1e-06 57.8 145 26.9
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 4.0e-06 57.4 140 27.9
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 4.0e-06 57.4 146 26.7
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 5.3e-06 57.0 164 29.9
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 5.3e-06 57.0 142 28.2
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 5.3e-06 57.0 149 28.9
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 6.9e-06 56.6 124 30.6
arahy.Tifrunner.gnm1.ann1.PQF71L Arachis hypogaea HOM05D004293 ORTHO05D007850 6.9e-06 56.6 64 45.3
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 6.9e-06 56.6 151 29.8
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 6.9e-06 56.6 143 28.0
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 6.9e-06 56.6 147 27.2
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 9.0e-06 56.2 142 30.3
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 9.0e-06 56.2 147 28.6
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 9.0e-06 56.2 151 29.8


User provided reference genes

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