Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 0.0e+00 1197.6 604 100.0
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 1.2e-224 783.5 674 61.7
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 8.7e-220 767.3 671 61.0
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 2.4e-217 759.2 672 61.2
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 3.1e-217 758.8 671 60.4
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 4.1e-217 758.4 678 60.5
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 2.6e-216 755.7 713 57.6
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 3.8e-215 751.9 659 60.5
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 1.8e-212 743.0 676 59.5
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 2.2e-210 736.1 661 60.5
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 1.8e-209 733.0 676 59.2
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 4.5e-208 728.4 672 58.0
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 5.0e-207 724.9 641 61.0
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 3.6e-205 718.8 659 59.2
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 1.4e-204 716.8 672 57.7
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 2.3e-204 716.1 710 55.6
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 2.2e-202 709.5 664 58.1
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.4e-201 706.8 668 58.2
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 4.1e-201 705.3 679 56.1
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 2.0e-200 703.0 669 58.0
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 1.0e-199 700.7 673 56.3
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.1e-198 697.2 676 56.4
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 1.0e-196 690.6 673 56.6
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.5e-195 686.8 668 56.4
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 3.3e-195 685.6 673 55.4
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 9.7e-195 684.1 650 56.6
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 3.7e-194 682.2 675 55.6
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.8e-194 681.8 689 56.0
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 1.8e-193 679.9 663 56.1
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 5.9e-192 674.9 679 55.1
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 9.4e-190 667.5 720 52.6
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 6.1e-189 664.8 669 54.1
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 8.0e-189 664.5 665 54.0
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 1.4e-188 663.7 687 53.9
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 1.4e-188 663.7 651 55.9
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.3e-188 662.9 667 55.8
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 2.3e-188 662.9 669 55.3
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 6.7e-188 661.4 676 55.2
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 8.8e-188 661.0 691 52.7
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 1.2e-187 660.6 676 54.9
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.0e-187 659.8 667 55.5
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 1.3e-186 657.1 694 52.0
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 8.2e-186 654.4 667 53.8
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 1.4e-185 653.7 624 57.5
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 1.8e-185 653.3 646 54.5
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 5.3e-185 651.7 656 55.6
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 1.2e-184 650.6 656 56.2
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 1.2e-184 650.6 611 55.8
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 1.6e-184 650.2 658 55.5
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 1.6e-184 650.2 658 55.5
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 1.6e-184 650.2 658 55.5
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 2.0e-184 649.8 655 53.9
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 1.3e-183 647.1 667 55.0
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 2.2e-183 646.4 672 52.8
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 6.5e-183 644.8 661 55.1
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 9.4e-182 641.0 673 53.5
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 3.6e-181 639.0 675 53.5
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 2.2e-178 629.8 840 45.2
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 1.2e-176 624.0 671 51.4
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 1.7e-175 620.2 667 53.4
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 1.7e-175 620.2 629 53.3
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 1.7e-175 620.2 742 49.2
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 8.9e-172 607.8 674 51.6
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 9.2e-169 597.8 593 54.6
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 1.7e-167 593.6 676 52.7
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 2.9e-167 592.8 665 51.1
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 8.6e-167 591.3 609 53.4
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 1.2e-165 587.4 703 48.4
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.1e-161 574.3 649 49.9
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.5e-158 563.9 612 53.4
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 1.2e-157 560.8 578 53.5
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 1.2e-155 554.3 603 51.1
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 3.5e-152 542.7 607 51.2
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 1.0e-151 541.2 636 49.2
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.7e-151 540.4 612 52.3
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 1.1e-150 537.7 603 50.4
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 5.2e-148 528.9 620 49.2
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 4.4e-147 525.8 622 48.4
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 4.9e-146 522.3 530 55.5
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 5.4e-145 518.8 531 54.8
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 9.2e-145 518.1 605 49.4
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 1.2e-144 517.7 608 48.7
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.6e-144 517.3 628 48.7
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 3.5e-144 516.2 530 54.0
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 5.1e-143 512.3 580 52.2
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.2e-141 507.7 606 48.3
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 3.2e-137 493.0 618 47.2
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 1.2e-133 481.1 491 55.0
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 2.1e-133 480.3 518 55.0
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 6.9e-132 475.3 610 47.5
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 7.3e-126 455.3 677 41.4
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 4.3e-118 429.5 504 48.4
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 3.1e-116 423.3 583 45.5
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 2.5e-110 403.7 505 47.5
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 3.4e-107 393.3 621 41.2
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 6.0e-104 382.5 662 37.8
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 3.3e-102 376.7 610 37.7
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 2.4e-100 370.5 390 51.3
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 1.0e-98 365.2 661 37.4
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 1.6e-96 357.8 557 42.2
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 3.1e-92 343.6 438 46.1
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 6.9e-92 342.4 717 36.4
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 8.8e-87 325.5 223 70.9
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 5.7e-86 322.8 224 71.9
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 3.1e-84 317.0 395 44.8
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.0e-83 314.3 270 62.6
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 1.4e-81 308.1 437 42.6
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 2.1e-80 304.3 423 43.7
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 1.6e-75 288.1 470 41.7
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 6.8e-71 272.7 599 34.6
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 2.5e-65 254.2 908 26.3
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 8.3e-61 239.2 171 70.8
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 5.5e-57 226.5 164 69.5
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 9.5e-57 225.7 174 64.9
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 4.4e-54 216.9 146 73.3
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.8e-53 214.2 143 76.2
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 4.1e-52 210.3 167 62.9
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 3.9e-50 203.8 209 55.5
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 6.6e-50 203.0 146 73.3
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 8.9e-47 192.6 166 62.7
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 6.4e-45 186.4 240 45.8
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.1e-44 185.7 171 53.8
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 8.0e-40 169.5 174 54.0
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 2.0e-38 164.9 143 59.4
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.4e-38 164.1 137 62.0
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 8.3e-37 159.5 146 57.5
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 5.4e-36 156.8 121 60.3
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 1.1e-31 142.5 168 49.4
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 5.2e-31 140.2 80 85.0
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 1.5e-30 138.7 100 69.0
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 1.3e-26 125.6 234 35.0
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 7.3e-25 119.8 150 49.3
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 4.0e-23 114.0 276 32.2
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 4.9e-21 107.1 144 45.8
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 2.7e-19 101.3 63 77.8
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.5e-19 100.9 55 87.3
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 4.6e-19 100.5 203 33.5
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 6.6e-18 96.7 53 83.0
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.1e-17 95.9 53 88.7
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 1.3e-16 92.4 56 76.8
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 4.8e-16 90.5 84 56.0
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 2.1e-11 75.1 124 36.3
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 2.7e-11 74.7 62 58.1
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 3.9e-10 70.9 90 44.4
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 4.3e-09 67.4 92 40.2
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 7.3e-09 66.6 92 40.2
Sp5g22380 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.8e-08 64.7 86 45.3
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 9.9e-06 56.2 53 52.8


User provided reference genes

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