Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc163.15 Carica papaya HOM05D002149 ORTHO05D002154 6.9e-75 283.9 142 100.0
Manes.09G104300 Manihot esculenta HOM05D002149 ORTHO05D002154 3.0e-30 135.6 95 74.7
Ciclev10011105m.g Citrus clementina HOM05D002149 ORTHO05D002154 7.5e-29 131.0 86 77.9
Atru.chr8.2221 Acer truncatum HOM05D002149 ORTHO05D002154 2.2e-28 129.4 94 77.7
Cfa017220 Carpinus fangiana HOM05D002149 ORTHO05D002154 1.8e-27 126.3 88 75.0
CSS0002582 Camellia sinensis var. sinensis HOM05D002149 ORTHO05D002154 1.6e-26 123.2 89 68.5
CANSAT35G0407 Cannabis sativa HOM05D002149 ORTHO05D002154 1.6e-26 123.2 87 75.9
CiPaw.09G208000 Carya illinoinensis HOM05D002149 ORTHO05D002154 2.7e-26 122.5 90 71.1
GSVIVG01033975001 Vitis vinifera HOM05D002149 ORTHO05D002154 2.7e-26 122.5 88 71.6
Thecc.05G017900 Theobroma cacao HOM05D002149 ORTHO05D002154 4.5e-26 121.7 87 74.7
Duzib128G0431 Durio zibethinus HOM05D002149 ORTHO05D002154 1.3e-25 120.2 86 74.4
Actinidia05370 Actinidia chinensis HOM05D002149 ORTHO05D002154 3.8e-25 118.6 87 69.0
RcHm_v2.0_Chr3g0463301 Rosa chinensis HOM05D002149 ORTHO05D002154 5.0e-25 118.2 86 73.3
Actinidia20727 Actinidia chinensis HOM05D002149 ORTHO05D002154 8.5e-25 117.5 91 64.8
Duzib093G1506 Durio zibethinus HOM05D002149 ORTHO05D002154 1.9e-24 116.3 87 73.6
TWI53G0360 Tripterygium wilfordii HOM05D002149 ORTHO05D002154 1.9e-24 116.3 82 75.6
Duzib106G1266 Durio zibethinus HOM05D002149 ORTHO05D002154 4.2e-24 115.2 86 72.1
Hma1.2p1_0362F.1_g136100 Hydrangea macrophylla HOM05D002149 ORTHO05D002154 4.2e-24 115.2 87 69.0
Prupe.6G275400 Prunus persica HOM05D002149 ORTHO05D002154 4.2e-24 115.2 147 49.0
Dinv03586 Davidia involucrata HOM05D002149 ORTHO05D002154 5.5e-24 114.8 86 68.6
Sc22g0002430 Simmondsia chinensis HOM05D002149 ORTHO05D002154 5.5e-24 114.8 86 68.6
vmacro08853 Vaccinium macrocarpon HOM05D002149 ORTHO05D002154 7.2e-24 114.4 89 64.0
TAR633G2470 Trochodendron aralioides HOM05D002149 ORTHO05D002154 1.2e-23 113.6 91 62.6
arahy.Tifrunner.gnm1.ann1.ECTA9H Arachis hypogaea HOM05D002149 ORTHO05D002154 1.6e-23 113.2 91 65.9
Cc06_g01480 Coffea canephora HOM05D002149 ORTHO05D002154 2.1e-23 112.8 92 64.1
Gohir.A01G228100 Gossypium hirsutum HOM05D002149 ORTHO05D002154 8.0e-23 110.9 86 70.9
Gohir.D01G217900 Gossypium hirsutum HOM05D002149 ORTHO05D002154 8.0e-23 110.9 86 70.9
Gorai.002G264300 Gossypium raimondii HOM05D002149 ORTHO05D002154 8.0e-23 110.9 86 70.9
FAN02G0732 Fragaria x ananassa HOM05D002149 ORTHO05D002154 1.0e-22 110.5 96 61.5
Psat3g130000 Pisum sativum HOM05D002149 ORTHO05D002154 1.0e-22 110.5 88 64.8
FAN09G2687 Fragaria x ananassa HOM05D002149 ORTHO05D002154 1.4e-22 110.2 137 47.4
FAN05G0150 Fragaria x ananassa HOM05D002149 ORTHO05D002154 3.0e-22 109.0 137 46.7
FAN05G3485 Fragaria x ananassa HOM05D002149 ORTHO05D002154 3.0e-22 109.0 137 46.7
FAN14G2165 Fragaria x ananassa HOM05D002149 ORTHO05D002154 3.0e-22 109.0 137 46.7
MSTRG.19018 Avicennia marina HOM05D002149 ORTHO05D002154 6.8e-22 107.8 92 59.8
FAN14G4062 Fragaria x ananassa HOM05D002149 ORTHO05D002154 6.8e-22 107.8 137 46.7
Phvul.008G105400 Phaseolus vulgaris HOM05D002149 ORTHO05D002154 8.8e-22 107.5 86 64.0
Glyma.07G148100 Glycine max HOM05D002149 ORTHO05D002154 1.2e-21 107.1 86 64.0
FvH4_6g11640 Fragaria vesca HOM05D002149 ORTHO05D002154 1.5e-21 106.7 137 46.0
Eucgr.K02986 Eucalyptus grandis HOM05D002149 ORTHO05D002154 2.0e-21 106.3 86 67.4
Glyma.18G199400 Glycine max HOM05D002149 ORTHO05D002154 7.5e-21 104.4 86 64.0
MD12G1164700 Malus domestica HOM05D002149 ORTHO05D002154 7.5e-21 104.4 86 69.8
CAN.G772.2 Capsicum annuum HOM05D002149 ORTHO05D002154 1.3e-20 103.6 93 57.0
VMungo1383G2015 Vigna mungo HOM05D002149 ORTHO05D002154 1.3e-20 103.6 96 57.3
Potri.016G114600 Populus trichocarpa HOM05D002149 ORTHO05D002154 1.7e-20 103.2 64 78.1
PGR004G2712 Punica granatum HOM05D002149 ORTHO05D002154 1.7e-20 103.2 82 68.3
Hund22325 Selenicereus undatus HOM05D002149 ORTHO05D002154 1.7e-20 103.2 90 62.2
Nitab4.5_0008420g0010 Nicotiana tabacum HOM05D002149 ORTHO05D002154 2.2e-20 102.8 93 59.1
Migut.J00183 Erythranthe guttata HOM05D002149 ORTHO05D002154 2.8e-20 102.4 90 58.9
Ca_07626_v3 Cicer arietinum L. HOM05D002149 ORTHO05D002154 3.7e-20 102.1 87 59.8
Lalb_Chr19g0124711 Lupinus albus HOM05D002149 ORTHO05D002154 3.7e-20 102.1 95 55.8
SalBow5G3383 Salvia bowleyana HOM05D002149 ORTHO05D002154 4.8e-20 101.7 94 57.4
MD04G1150700 Malus domestica HOM05D002149 ORTHO05D002154 1.1e-19 100.5 93 62.4
Lj1g0021513 Lotus japonicus HOM05D002149 ORTHO05D002154 1.4e-19 100.1 96 56.2
Medtr7g067540 Medicago truncatula HOM05D002149 ORTHO05D002154 1.4e-19 100.1 86 61.6
Nitab4.5_0000335g0130 Nicotiana tabacum HOM05D002149 ORTHO05D002154 1.4e-19 100.1 67 73.1
MSTRG.5584 Avicennia marina HOM05D002149 ORTHO05D002154 7.0e-19 97.8 87 60.9
Haze_20988 Corylus avellana HOM05D002149 ORTHO05D002154 7.0e-19 97.8 155 43.2
CsaV3_4G026160 Cucumis sativus L. HOM05D002149 ORTHO05D002154 1.6e-18 96.7 93 59.1
Sabra06G0076100 Salix brachista HOM05D002149 ORTHO05D002154 1.6e-18 96.7 72 68.1
Solyc09g014440.4 Solanum lycopersicum HOM05D002149 ORTHO05D002154 1.6e-18 96.7 93 55.9
Thhalv10012754m.g Eutrema salsugineum HOM05D002149 ORTHO05D002154 2.0e-18 96.3 77 64.9
Sp6g40600 Schrenkiella parvula HOM05D002149 ORTHO05D002154 2.0e-18 96.3 79 60.8
BcaNung06531 Brassica carinata HOM05D002149 ORTHO05D002154 3.5e-18 95.5 76 61.8
Sopen09g007250 Solanum pennellii HOM05D002149 ORTHO05D002154 3.5e-18 95.5 93 55.9
TPR.G8126 Trifolium pratense HOM05D002149 ORTHO05D002154 4.5e-18 95.1 86 57.0
MELO3C003243.2 Cucumis melo HOM05D002149 ORTHO05D002154 5.9e-18 94.7 77 63.6
Oeu055168.1 Olea europaea HOM05D002149 ORTHO05D002154 7.7e-18 94.4 72 66.7
Sed0006268 Sechium edule HOM05D002149 ORTHO05D002154 7.7e-18 94.4 77 63.6
TAR623G1197 Trochodendron aralioides HOM05D002149 ORTHO05D002154 1.0e-17 94.0 72 65.3
THA.LOC104816210 Tarenaya hassleriana HOM05D002149 ORTHO05D002154 1.3e-17 93.6 64 71.9
BolC3t12619H Brassica oleracea HOM05D002149 ORTHO05D002154 1.7e-17 93.2 77 59.7
Peaxi162Scf00141g00338 Petunia axillaris HOM05D002149 ORTHO05D002154 1.7e-17 93.2 91 56.0
EL10Ac8g19498 Beta vulgaris HOM05D002149 ORTHO05D002154 2.3e-17 92.8 86 59.3
A03p00370 Brassica napus HOM05D002149 ORTHO05D002154 2.9e-17 92.4 77 59.7
BraA03t09428Z Brassica rapa HOM05D002149 ORTHO05D002154 2.9e-17 92.4 77 59.7
Carub.0006s0061 Capsella rubella HOM05D002149 ORTHO05D002154 2.9e-17 92.4 76 63.2
DCAR_028839 Daucus carota HOM05D002149 ORTHO05D002154 2.9e-17 92.4 87 57.5
TPR.G31896 Trifolium pratense HOM05D002149 ORTHO05D002154 6.5e-17 91.3 86 55.8
Oeu064510.1 Olea europaea HOM05D002149 ORTHO05D002154 1.1e-16 90.5 87 52.9
PSO384G4939 Papaver somniferum HOM05D002149 ORTHO05D002154 1.1e-16 90.5 76 63.2
AL6G10900 Arabidopsis lyrata HOM05D002149 ORTHO05D002154 1.5e-16 90.1 87 57.5
AT5G01270 Arabidopsis thaliana HOM05D002149 ORTHO05D002154 1.5e-16 90.1 87 56.3
SGA_v2.0_scaffold85G26748 Striga asiatica HOM05D002149 ORTHO05D002154 3.3e-16 89.0 75 60.0
Nn2g11449 Nelumbo nucifera HOM05D002149 ORTHO05D002154 4.2e-16 88.6 90 55.6
Aa31LG1G22890 Aethionema arabicum HOM05D002149 ORTHO05D002154 7.2e-16 87.8 72 61.1
AUR62043096 Chenopodium quinoa HOM05D002149 ORTHO05D002154 7.2e-16 87.8 86 57.0
ECA247G0839 Erigeron canadensis HOM05D002149 ORTHO05D002154 2.8e-15 85.9 91 53.8
ATR0618G225 Amborella trichopoda HOM05D002149 ORTHO05D002154 1.8e-14 83.2 72 59.7
CARHR211610 Cardamine hirsuta HOM05D002149 ORTHO05D002154 5.2e-14 81.6 87 54.0
SHI12827 Sapria himalayana HOM05D002149 ORTHO05D002154 5.2e-14 81.6 95 54.7
HanXRQChr15g0464031 Helianthus annuus HOM05D002149 ORTHO05D002154 3.4e-13 79.0 79 58.2
MBI14_g28266_MAGBIO Magnolia biondii HOM05D002149 ORTHO05D002154 5.7e-13 78.2 62 62.9
Aqoxy4G02609 Aquilegia oxysepala HOM05D002149 ORTHO05D002154 7.5e-13 77.8 88 51.1
Lsat_1_v5_gn_9_33761 Lactuca sativa HOM05D002149 ORTHO05D002154 7.5e-13 77.8 79 58.2
Rhsim04G0128900 Rhododendron simsii HOM05D002149 ORTHO05D002154 2.8e-12 75.9 184 31.0
Duzib160G0447 Durio zibethinus HOM05D002149 ORTHO05D002154 1.8e-11 73.2 107 39.3
Nn1g04013 Nelumbo nucifera HOM05D002149 ORTHO05D002154 5.4e-11 71.6 77 49.4
COL.COLO4_14551 Corchorus olitorius HOM05D002149 ORTHO05D002154 7.0e-11 71.2 56 64.3
Zm00001eb147420 Zea mays HOM05D002149 ORTHO05D002154 2.0e-10 69.7 97 45.4
Thecc.06G191200 Theobroma cacao HOM05D002149 ORTHO05D002154 7.8e-10 67.8 114 37.7
CDE07G1093 Ceratophyllum demersum HOM05D002149 ORTHO05D002154 1.7e-09 66.6 89 46.1
Duzib235G0094 Durio zibethinus HOM05D002149 ORTHO05D002154 2.3e-09 66.2 107 37.4
Gohir.A10G023900 Gossypium hirsutum HOM05D002149 ORTHO05D002154 2.3e-09 66.2 91 38.5
TAR627G0551 Trochodendron aralioides HOM05D002149 ORTHO05D002154 2.3e-09 66.2 77 45.5
MSTRG.14683 Avicennia marina HOM05D002149 ORTHO05D002154 6.6e-09 64.7 80 42.5
Cpa.g.sc27.71 Carica papaya HOM05D002149 ORTHO05D002154 6.6e-09 64.7 118 36.4
SGA_v2.0_scaffold7G03978 Striga asiatica HOM05D002149 ORTHO05D002154 6.6e-09 64.7 79 41.8
HPP92_003412 Vanilla planifolia HOM05D002149 ORTHO05D002154 6.6e-09 64.7 62 53.2
Lj2C76T15 Lonicera japonica HOM05D002149 ORTHO05D002154 8.6e-09 64.3 56 51.8
Ciclev10014168m.g Citrus clementina HOM05D002149 ORTHO05D002154 1.9e-08 63.2 111 36.9
Sed0016039 Sechium edule HOM05D002149 ORTHO05D002154 1.9e-08 63.2 109 41.3
PSO541G5777 Papaver somniferum HOM05D002149 ORTHO05D002154 2.5e-08 62.8 86 46.5
PGSC0003DMG400022380 Solanum tuberosum HOM05D002149 ORTHO05D002154 2.5e-08 62.8 62 46.8
vmacro15893 Vaccinium macrocarpon HOM05D002149 ORTHO05D002154 2.5e-08 62.8 62 48.4
Actinidia05613 Actinidia chinensis HOM05D002149 ORTHO05D002154 3.3e-08 62.4 86 38.4
CSS0012849 Camellia sinensis var. sinensis HOM05D002149 ORTHO05D002154 3.3e-08 62.4 73 46.6
COL.COLO4_31506 Corchorus olitorius HOM05D002149 ORTHO05D002154 3.3e-08 62.4 107 33.6
Gohir.D10G024600 Gossypium hirsutum HOM05D002149 ORTHO05D002154 3.3e-08 62.4 91 36.3
Gorai.011G025900 Gossypium raimondii HOM05D002149 ORTHO05D002154 3.3e-08 62.4 91 36.3
CiPaw.10G046800 Carya illinoinensis HOM05D002149 ORTHO05D002154 4.3e-08 62.0 107 40.2
Os01g0857000 Oryza sativa ssp. japonica HOM05D002149 ORTHO05D002154 4.3e-08 62.0 98 41.8
Rhsim02G0127000 Rhododendron simsii HOM05D002149 ORTHO05D002154 4.3e-08 62.0 61 50.8
SalBow8G5259 Salvia bowleyana HOM05D002149 ORTHO05D002154 5.6e-08 61.6 79 40.5
Dinv40535 Davidia involucrata HOM05D002149 ORTHO05D002154 7.3e-08 61.2 71 42.3
Migut.M01186 Erythranthe guttata HOM05D002149 ORTHO05D002154 7.3e-08 61.2 71 46.5
PSO675G8102 Papaver somniferum HOM05D002149 ORTHO05D002154 1.2e-07 60.5 86 45.3
Potri.004G040000 Populus trichocarpa HOM05D002149 ORTHO05D002154 1.2e-07 60.5 107 36.4
Aqoxy4G01071 Aquilegia oxysepala HOM05D002149 ORTHO05D002154 1.6e-07 60.1 86 40.7
Solyc02g078550.3 Solanum lycopersicum HOM05D002149 ORTHO05D002154 1.6e-07 60.1 62 45.2
Sopen02g023400 Solanum pennellii HOM05D002149 ORTHO05D002154 1.6e-07 60.1 62 45.2
TWI38G1276 Tripterygium wilfordii HOM05D002149 ORTHO05D002154 1.6e-07 60.1 125 34.4
Aqoxy1G02556 Aquilegia oxysepala HOM05D002149 ORTHO05D002154 2.1e-07 59.7 86 39.5
Haze_06503 Corylus avellana HOM05D002149 ORTHO05D002154 2.8e-07 59.3 109 35.8
Actinidia01895 Actinidia chinensis HOM05D002149 ORTHO05D002154 3.6e-07 58.9 86 39.5
Potri.006G099302 Populus trichocarpa HOM05D002149 ORTHO05D002154 3.6e-07 58.9 33 90.9
Lj2A76T82 Lonicera japonica HOM05D002149 ORTHO05D002154 4.7e-07 58.5 33 90.9
Peaxi162Scf00379g00054 Petunia axillaris HOM05D002149 ORTHO05D002154 4.7e-07 58.5 113 34.5
Prupe.4G043500 Prunus persica HOM05D002149 ORTHO05D002154 4.7e-07 58.5 91 39.6
Sabra11G0033900 Salix brachista HOM05D002149 ORTHO05D002154 4.7e-07 58.5 75 42.7
TWI63G0661 Tripterygium wilfordii HOM05D002149 ORTHO05D002154 4.7e-07 58.5 125 33.6
ATR0680G135 Amborella trichopoda HOM05D002149 ORTHO05D002154 6.1e-07 58.2 86 40.7
DCAR_028109 Daucus carota HOM05D002149 ORTHO05D002154 6.1e-07 58.2 77 45.5
Lj2C286T11 Lonicera japonica HOM05D002149 ORTHO05D002154 6.1e-07 58.2 77 42.9
Nitab4.5_0003668g0090 Nicotiana tabacum HOM05D002149 ORTHO05D002154 6.1e-07 58.2 77 40.3
Nitab4.5_0012352g0020 Nicotiana tabacum HOM05D002149 ORTHO05D002154 6.1e-07 58.2 77 40.3
CAN.G1627.11 Capsicum annuum HOM05D002149 ORTHO05D002154 8.0e-07 57.8 62 45.2
Cc02_g13040 Coffea canephora HOM05D002149 ORTHO05D002154 1.8e-06 56.6 61 41.0
COL.COLO4_14550 Corchorus olitorius HOM05D002149 ORTHO05D002154 1.8e-06 56.6 36 80.6
PGR042G1575 Punica granatum HOM05D002149 ORTHO05D002154 1.8e-06 56.6 59 47.5
HPP92_007340 Vanilla planifolia HOM05D002149 ORTHO05D002154 2.3e-06 56.2 92 39.1
Cfa000412 Carpinus fangiana HOM05D002149 ORTHO05D002154 3.0e-06 55.8 109 33.9
Migut.H01509 Erythranthe guttata HOM05D002149 ORTHO05D002154 4.0e-06 55.5 49 51.0
Gohir.D06G211100 Gossypium hirsutum HOM05D002149 ORTHO05D002154 4.0e-06 55.5 47 55.3
CiPaw.09G057100 Carya illinoinensis HOM05D002149 ORTHO05D002154 5.2e-06 55.1 107 37.4
Dinv07534 Davidia involucrata HOM05D002149 ORTHO05D002154 5.2e-06 55.1 84 39.3
Potri.011G049400 Populus trichocarpa HOM05D002149 ORTHO05D002154 5.2e-06 55.1 75 42.7
C03p00530 Brassica napus HOM05D002149 ORTHO05D002154 6.8e-06 54.7 34 79.4


User provided reference genes

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