Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc16.103 Carica papaya HOM05D000104 ORTHO05D005604 6.3e-103 377.5 195 100.0
Cpa.g.sc16.94 Carica papaya HOM05D000104 ORTHO05D005604 3.2e-91 338.6 191 92.1
CiPaw.02G087300 Carya illinoinensis HOM05D000104 ORTHO05D005604 5.4e-46 188.3 184 55.4
Haze_01047 Corylus avellana HOM05D000104 ORTHO05D005604 7.1e-46 188.0 184 57.6
Thecc.04G275900 Theobroma cacao HOM05D000104 ORTHO05D005604 7.1e-46 188.0 188 58.0
Cfa015506 Carpinus fangiana HOM05D000104 ORTHO05D005604 1.6e-45 186.8 184 57.1
COL.COLO4_25219 Corchorus olitorius HOM05D000104 ORTHO05D005604 1.3e-44 183.7 188 58.0
Duzib151G0282 Durio zibethinus HOM05D000104 ORTHO05D005604 1.5e-43 180.3 188 56.4
Ciclev10004115m.g Citrus clementina HOM05D000104 ORTHO05D005604 4.7e-42 175.3 187 56.7
QL06p007127 Quercus lobata HOM05D000104 ORTHO05D005604 1.1e-41 174.1 193 53.9
Dinv36279 Davidia involucrata HOM05D000104 ORTHO05D005604 4.0e-41 172.2 185 55.7
TWI53G1887 Tripterygium wilfordii HOM05D000104 ORTHO05D005604 8.9e-41 171.0 186 51.1
Manes.15G017800 Manihot esculenta HOM05D000104 ORTHO05D005604 1.2e-40 170.6 188 53.7
Duzib212G0880 Durio zibethinus HOM05D000104 ORTHO05D005604 4.4e-40 168.7 188 54.8
Prupe.1G143200 Prunus persica HOM05D000104 ORTHO05D005604 4.4e-40 168.7 183 51.9
Gorai.011G185100 Gossypium raimondii HOM05D000104 ORTHO05D005604 5.8e-40 168.3 188 54.8
Gorai.006G257000 Gossypium raimondii HOM05D000104 ORTHO05D005604 2.2e-39 166.4 185 54.6
TAR365G0556 Trochodendron aralioides HOM05D000104 ORTHO05D005604 2.9e-39 166.0 189 50.8
GSVIVG01017820001 Vitis vinifera HOM05D000104 ORTHO05D005604 1.1e-38 164.1 189 52.4
Atru.chr3.1960 Acer truncatum HOM05D000104 ORTHO05D005604 1.4e-38 163.7 189 52.9
Gohir.D10G165750 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.4e-38 163.7 188 53.7
Gohir.D09G234100 Gossypium hirsutum HOM05D000104 ORTHO05D005604 4.1e-38 162.2 185 54.1
Gohir.A10G101880 Gossypium hirsutum HOM05D000104 ORTHO05D005604 7.1e-38 161.4 188 53.2
MD13G1174700 Malus domestica HOM05D000104 ORTHO05D005604 2.1e-37 159.8 183 50.3
Dinv08033 Davidia involucrata HOM05D000104 ORTHO05D005604 2.3e-36 156.4 192 52.6
MD16G1176400 Malus domestica HOM05D000104 ORTHO05D005604 5.1e-36 155.2 183 49.2
Potri.010G019150 Populus trichocarpa HOM05D000104 ORTHO05D005604 1.1e-35 154.1 189 49.7
Potri.008G195900 Populus trichocarpa HOM05D000104 ORTHO05D005604 8.1e-34 147.9 189 50.3
CANSAT78G1941 Cannabis sativa HOM05D000104 ORTHO05D005604 2.4e-33 146.4 183 49.2
Lj1C354G8 Lonicera japonica HOM05D000104 ORTHO05D005604 2.4e-33 146.4 189 46.6
Sed0001718 Sechium edule HOM05D000104 ORTHO05D005604 1.5e-32 143.7 186 48.4
Lj1A357G13 Lonicera japonica HOM05D000104 ORTHO05D005604 6.4e-31 138.3 149 51.0
Sabra08G0149100 Salix brachista HOM05D000104 ORTHO05D005604 6.4e-31 138.3 186 48.9
TAR362G0998 Trochodendron aralioides HOM05D000104 ORTHO05D005604 1.9e-30 136.7 189 46.6
ClCG05G005740 Citrullus lanatus HOM05D000104 ORTHO05D005604 3.2e-30 136.0 179 48.0
FAN22G0992 Fragaria x ananassa HOM05D000104 ORTHO05D005604 3.2e-30 136.0 153 52.9
Psat4g029520 Pisum sativum HOM05D000104 ORTHO05D005604 3.2e-30 136.0 200 44.0
TPR.G14962 Trifolium pratense HOM05D000104 ORTHO05D005604 3.2e-30 136.0 194 45.9
Ca_21553_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005604 4.2e-30 135.6 200 47.0
FvH4_4g17030 Fragaria vesca HOM05D000104 ORTHO05D005604 4.2e-30 135.6 153 52.9
FAN12G1949 Fragaria x ananassa HOM05D000104 ORTHO05D005604 4.2e-30 135.6 153 52.9
RcHm_v2.0_Chr4g0420741 Rosa chinensis HOM05D000104 ORTHO05D005604 7.1e-30 134.8 183 48.6
FAN17G1482 Fragaria x ananassa HOM05D000104 ORTHO05D005604 9.3e-30 134.4 153 52.3
FAN07G2961 Fragaria x ananassa HOM05D000104 ORTHO05D005604 2.1e-29 133.3 153 52.3
CsaV3_3G014070 Cucumis sativus L. HOM05D000104 ORTHO05D005604 6.0e-29 131.7 179 46.9
Nn3g21275 Nelumbo nucifera HOM05D000104 ORTHO05D005604 1.0e-28 131.0 197 42.6
MELO3C006601.2 Cucumis melo HOM05D000104 ORTHO05D005604 1.3e-28 130.6 179 47.5
Medtr4g118720 Medicago truncatula HOM05D000104 ORTHO05D005604 2.3e-28 129.8 194 45.9
Lj6g0025055 Lotus japonicus HOM05D000104 ORTHO05D005604 3.0e-28 129.4 179 45.8
Actinidia06887 Actinidia chinensis HOM05D000738 ORTHO05D000675 2.5e-27 126.3 144 50.0
THA.LOC104802562 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 6.2e-26 121.7 191 46.1
arahy.Tifrunner.gnm1.ann1.Z03QFY Arachis hypogaea HOM05D000104 ORTHO05D005604 1.1e-25 120.9 188 43.6
Glyma.07G252100 Glycine max HOM05D000104 ORTHO05D005604 1.1e-25 120.9 188 43.6
Glyma.17G022300 Glycine max HOM05D000104 ORTHO05D005604 1.4e-25 120.6 188 43.1
arahy.Tifrunner.gnm1.ann1.Q30CKZ Arachis hypogaea HOM05D000104 ORTHO05D005604 3.1e-25 119.4 189 44.4
TAR365G0890 Trochodendron aralioides HOM05D000104 ORTHO05D005604 3.1e-25 119.4 198 41.4
Actinidia16312 Actinidia chinensis HOM05D000104 ORTHO05D005604 4.0e-25 119.0 145 48.3
THA.LOC104820235 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 1.5e-24 117.1 198 42.4
Aa31LG5G20580 Aethionema arabicum HOM05D000104 ORTHO05D005604 2.0e-24 116.7 192 41.7
Phvul.003G100200 Phaseolus vulgaris HOM05D000104 ORTHO05D005604 2.6e-24 116.3 188 44.1
arahy.Tifrunner.gnm1.ann1.S83KV6 Arachis hypogaea HOM05D000104 ORTHO05D005604 5.8e-24 115.2 179 44.1
arahy.Tifrunner.gnm1.ann1.N8S0IJ Arachis hypogaea HOM05D000104 ORTHO05D005604 9.9e-24 114.4 179 43.6
PGR042G2589 Punica granatum HOM05D000104 ORTHO05D005604 9.9e-24 114.4 149 48.3
Migut.D00580 Erythranthe guttata HOM05D000104 ORTHO05D005604 1.7e-23 113.6 185 44.3
BolC3t14976H Brassica oleracea HOM05D000104 ORTHO05D005604 2.2e-23 113.2 182 42.3
C03p25910 Brassica napus HOM05D000104 ORTHO05D005604 2.9e-23 112.8 182 42.3
Lalb_Chr12g0196421 Lupinus albus HOM05D000104 ORTHO05D005604 2.9e-23 112.8 190 43.2
BraA03t11420Z Brassica rapa HOM05D000104 ORTHO05D005604 3.8e-23 112.5 182 42.3
Cc00_g10730 Coffea canephora HOM05D000104 ORTHO05D005604 6.4e-23 111.7 186 43.5
Thhalv10016121m.g Eutrema salsugineum HOM05D000104 ORTHO05D005604 8.4e-23 111.3 182 41.2
Lalb_Chr13g0303901 Lupinus albus HOM05D000104 ORTHO05D005604 8.4e-23 111.3 178 44.4
A03p21840 Brassica napus HOM05D000104 ORTHO05D005604 1.1e-22 110.9 178 42.1
Sp4g21400 Schrenkiella parvula HOM05D000104 ORTHO05D005604 2.4e-22 109.8 182 40.7
vmacro04191 Vaccinium macrocarpon HOM05D000104 ORTHO05D005604 5.4e-22 108.6 157 43.3
DCAR_013049 Daucus carota HOM05D000104 ORTHO05D005604 9.3e-22 107.8 185 38.9
Rhsim13G0223800 Rhododendron simsii HOM05D000104 ORTHO05D005604 9.3e-22 107.8 144 45.8
Nitab4.5_0000492g0040 Nicotiana tabacum HOM05D000104 ORTHO05D005604 2.1e-21 106.7 185 39.5
Lj4g0028061 Lotus japonicus HOM05D000104 ORTHO05D005604 3.5e-21 105.9 187 41.2
SGA_v2.0_scaffold8G04607 Striga asiatica HOM05D000104 ORTHO05D005604 3.5e-21 105.9 170 43.5
Nitab4.5_0006542g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005604 4.6e-21 105.5 185 38.9
PSO339G1276 Papaver somniferum HOM05D000104 ORTHO05D005604 3.0e-20 102.8 185 40.0
AUR62040388 Chenopodium quinoa HOM05D000104 ORTHO05D005604 3.9e-20 102.4 179 42.5
Solyc11g062010.3 Solanum lycopersicum HOM05D000104 ORTHO05D005604 5.1e-20 102.1 187 38.0
Sopen11g023970 Solanum pennellii HOM05D000104 ORTHO05D005604 5.1e-20 102.1 187 38.0
CAN.G71.7 Capsicum annuum HOM05D000104 ORTHO05D005604 1.5e-19 100.5 186 37.1
AUR62042660 Chenopodium quinoa HOM05D000104 ORTHO05D005604 5.6e-19 98.6 179 41.3
ECA233G1169 Erigeron canadensis HOM05D000104 ORTHO05D005604 9.6e-19 97.8 99 56.6
arahy.Tifrunner.gnm1.ann1.0XZV5D Arachis hypogaea HOM05D000846 ORTHO05D001340 1.6e-18 97.1 150 44.0
Lsat_1_v5_gn_8_137440 Lactuca sativa HOM05D000104 ORTHO05D005604 1.6e-18 97.1 170 41.2
arahy.Tifrunner.gnm1.ann1.Q10S7I Arachis hypogaea HOM05D000104 ORTHO05D005604 2.1e-18 96.7 181 37.0
Peaxi162Scf00029g00307 Petunia axillaris HOM05D000104 ORTHO05D005604 4.8e-18 95.5 192 37.0
Oeu050209.1 Olea europaea HOM05D000104 ORTHO05D005604 6.2e-18 95.1 185 40.5
PSO801G0783 Papaver somniferum HOM05D000104 ORTHO05D005604 1.1e-17 94.4 185 38.4
arahy.Tifrunner.gnm1.ann1.Z04G07 Arachis hypogaea HOM05D000104 ORTHO05D005604 1.4e-17 94.0 181 37.6
EL10Ac3g06521 Beta vulgaris HOM05D000104 ORTHO05D005604 1.8e-17 93.6 180 42.2
AT2G28290 Arabidopsis thaliana HOM05D000104 ORTHO05D005604 3.1e-17 92.8 188 36.7
AL4G21810 Arabidopsis lyrata HOM05D000104 ORTHO05D005604 4.0e-17 92.4 191 36.1
HanXRQChr17g0554821 Helianthus annuus HOM05D000104 ORTHO05D005604 5.3e-17 92.0 166 39.8
TAR365G0129 Trochodendron aralioides HOM05D000104 ORTHO05D005604 4.5e-16 89.0 148 40.5
CARHR121200 Cardamine hirsuta HOM05D000104 ORTHO05D005604 1.7e-15 87.0 189 33.9
Ah.04g153970 Amaranthus hybridus HOM05D000104 ORTHO05D005604 2.9e-15 86.3 143 41.3
Aqoxy5G00624 Aquilegia oxysepala HOM05D000104 ORTHO05D005604 4.9e-15 85.5 97 49.5
BcaB01g03644 Brassica carinata HOM05D000104 ORTHO05D005604 1.9e-14 83.6 178 36.5
SHI37476 Sapria himalayana HOM05D005377 ORTHO05D005604 3.2e-14 82.8 68 58.8
HPP92_007983 Vanilla planifolia HOM05D002012 ORTHO05D001992 1.2e-13 80.9 99 50.5
ATR1101G061 Amborella trichopoda HOM05D000104 ORTHO05D005604 7.9e-13 78.2 178 34.8
Zm00001eb280740 Zea mays HOM05D000104 ORTHO05D005604 8.7e-12 74.7 176 36.4
CDE05G2634 Ceratophyllum demersum HOM05D000104 ORTHO05D005604 1.9e-11 73.6 56 62.5
Gohir.A09G233050 Gossypium hirsutum HOM05D000104 ORTHO05D005604 2.0e-08 63.5 43 74.4
SEGI_16038 Sequoiadendron giganteum HOM05D000104 ORTHO05D005604 3.4e-08 62.8 176 33.5


User provided reference genes

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