Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc139.77 Carica papaya HOM05D006124 ORTHO05D007854 1.8e-270 935.3 459 100.0
Cfa012640 Carpinus fangiana HOM05D006124 ORTHO05D007854 1.5e-208 729.6 424 82.5
QL01p023235 Quercus lobata HOM05D006124 ORTHO05D007854 7.6e-208 727.2 423 82.3
Haze_08019 Corylus avellana HOM05D006124 ORTHO05D007854 8.4e-207 723.8 431 81.4
THA.LOC104801004 Tarenaya hassleriana HOM05D006124 ORTHO05D007854 2.4e-206 722.2 419 83.8
Duzib150G0641 Durio zibethinus HOM05D006124 ORTHO05D007854 2.5e-203 712.2 405 84.4
Ciclev10005033m.g Citrus clementina HOM05D006124 ORTHO05D007854 9.6e-203 710.3 424 80.9
Dinv30520 Davidia involucrata HOM05D006124 ORTHO05D007854 2.8e-202 708.8 421 82.2
FAN25G1144 Fragaria x ananassa HOM05D006124 ORTHO05D007854 2.8e-202 708.8 422 80.3
RcHm_v2.0_Chr5g0060301 Rosa chinensis HOM05D006124 ORTHO05D007854 2.8e-202 708.8 422 80.6
GSVIVG01025154001 Vitis vinifera HOM05D006124 ORTHO05D007854 2.8e-202 708.8 466 76.2
Hma1.2p1_0002F.1_g001970 Hydrangea macrophylla HOM05D006124 ORTHO05D007854 6.2e-202 707.6 429 80.9
CSS0017090 Camellia sinensis var. sinensis HOM05D006124 ORTHO05D007854 1.1e-201 706.8 429 80.4
Gohir.D09G102900 Gossypium hirsutum HOM05D006124 ORTHO05D007854 1.4e-201 706.4 415 81.4
FAN21G3497 Fragaria x ananassa HOM05D006124 ORTHO05D007854 5.3e-201 704.5 422 79.9
FvH4_3g32970 Fragaria vesca HOM05D006124 ORTHO05D007854 1.2e-200 703.4 422 79.6
Gohir.A09G106200 Gossypium hirsutum HOM05D006124 ORTHO05D007854 1.5e-200 703.0 415 81.9
Gorai.006G120700 Gossypium raimondii HOM05D006124 ORTHO05D007854 1.5e-200 703.0 415 81.9
MD03G1112800 Malus domestica HOM05D006124 ORTHO05D007854 2.0e-200 702.6 423 81.1
FAN11G0357 Fragaria x ananassa HOM05D006124 ORTHO05D007854 2.6e-200 702.2 422 79.4
Thhalv10007730m.g Eutrema salsugineum HOM05D006124 ORTHO05D007854 3.4e-200 701.8 423 80.1
ClCG01G004970 Citrullus lanatus HOM05D006124 ORTHO05D007854 4.5e-200 701.4 424 80.0
A08p36590 Brassica napus HOM05D006124 ORTHO05D007854 1.7e-199 699.5 423 79.7
BraA08t35561Z Brassica rapa HOM05D006124 ORTHO05D007854 1.7e-199 699.5 423 79.7
AL1G14800 Arabidopsis lyrata HOM05D006124 ORTHO05D007854 4.9e-199 698.0 423 80.1
AT1G05055 Arabidopsis thaliana HOM05D006124 ORTHO05D007854 6.5e-199 697.6 423 80.1
CARHR004500 Cardamine hirsuta HOM05D006124 ORTHO05D007854 6.5e-199 697.6 423 79.4
CsaV3_5G005370 Cucumis sativus L. HOM05D006124 ORTHO05D007854 8.4e-199 697.2 424 79.0
Manes.04G024500 Manihot esculenta HOM05D006124 ORTHO05D007854 8.4e-199 697.2 415 82.4
BcaB03g13459 Brassica carinata HOM05D006124 ORTHO05D007854 1.1e-198 696.8 423 79.4
C08p01730 Brassica napus HOM05D006124 ORTHO05D007854 1.1e-198 696.8 423 79.4
BolC8t46973H Brassica oleracea HOM05D006124 ORTHO05D007854 1.1e-198 696.8 423 79.4
Rhsim08G0043400 Rhododendron simsii HOM05D006124 ORTHO05D007854 1.4e-198 696.4 421 81.0
Eucgr.J00945 Eucalyptus grandis HOM05D006124 ORTHO05D007854 2.5e-198 695.7 425 80.7
Ciclev10011800m.g Citrus clementina HOM05D006124 ORTHO05D007854 3.2e-198 695.3 424 80.2
Atru.chr3.3681 Acer truncatum HOM05D006124 ORTHO05D007854 4.2e-198 694.9 428 79.2
Thecc.09G259100 Theobroma cacao HOM05D006124 ORTHO05D007854 4.2e-198 694.9 417 81.3
CANSAT54G1697 Cannabis sativa HOM05D006124 ORTHO05D007854 9.3e-198 693.7 425 79.1
Sp1g03920 Schrenkiella parvula HOM05D006124 ORTHO05D007854 9.3e-198 693.7 425 79.3
Actinidia07118 Actinidia chinensis HOM05D006124 ORTHO05D007854 1.6e-197 693.0 428 78.7
MELO3C005421.2 Cucumis melo HOM05D006124 ORTHO05D007854 7.9e-197 690.6 424 78.8
Aa31LG1G19730 Aethionema arabicum HOM05D006124 ORTHO05D007854 1.8e-196 689.5 422 79.1
Sed0018571 Sechium edule HOM05D006124 ORTHO05D007854 1.8e-196 689.5 422 80.1
Cc01_g01430 Coffea canephora HOM05D006124 ORTHO05D007854 3.0e-196 688.7 423 80.9
Prupe.6G097100 Prunus persica HOM05D006124 ORTHO05D007854 3.0e-196 688.7 423 80.1
vmacro03179 Vaccinium macrocarpon HOM05D006124 ORTHO05D007854 3.0e-196 688.7 421 79.8
Lj1g0025688 Lotus japonicus HOM05D006124 ORTHO05D007854 6.7e-196 687.6 419 77.8
Carub.0001s0430 Capsella rubella HOM05D006124 ORTHO05D007854 8.7e-196 687.2 423 78.0
arahy.Tifrunner.gnm1.ann1.63AZS3 Arachis hypogaea HOM05D006124 ORTHO05D007854 1.1e-195 686.8 419 77.6
arahy.Tifrunner.gnm1.ann1.M1WJK6 Arachis hypogaea HOM05D006124 ORTHO05D007854 1.5e-195 686.4 421 77.4
TWI39G0794 Tripterygium wilfordii HOM05D006124 ORTHO05D007854 1.5e-195 686.4 414 80.9
Glyma.19G129000 Glycine max HOM05D006124 ORTHO05D007854 7.4e-195 684.1 422 76.5
TPR.G16093 Trifolium pratense HOM05D006124 ORTHO05D007854 7.4e-195 684.1 422 76.8
COL.COLO4_05187 Corchorus olitorius HOM05D006124 ORTHO05D007854 9.6e-195 683.7 418 80.4
Lalb_Chr22g0357551 Lupinus albus HOM05D006124 ORTHO05D007854 1.6e-194 682.9 410 78.8
HanXRQChr02g0055911 Helianthus annuus HOM05D006124 ORTHO05D007854 2.1e-194 682.6 419 80.2
Lalb_Chr14g0365721 Lupinus albus HOM05D006124 ORTHO05D007854 8.2e-194 680.6 420 77.1
CiPaw.05G171100 Carya illinoinensis HOM05D006124 ORTHO05D007854 3.1e-193 678.7 427 78.2
Solyc04g054700.3 Solanum lycopersicum HOM05D006124 ORTHO05D007854 6.9e-193 677.6 424 78.3
Medtr7g089440 Medicago truncatula HOM05D006124 ORTHO05D007854 1.5e-192 676.4 423 76.4
Nn7g36111 Nelumbo nucifera HOM05D006124 ORTHO05D007854 1.5e-192 676.4 412 80.1
Aqoxy5G00340 Aquilegia oxysepala HOM05D006124 ORTHO05D007854 2.0e-192 676.0 417 78.4
Ca_08379_v3 Cicer arietinum L. HOM05D006124 ORTHO05D007854 2.6e-192 675.6 420 76.9
Peaxi162Scf00876g00022 Petunia axillaris HOM05D006124 ORTHO05D007854 2.6e-192 675.6 425 79.1
Lsat_1_v5_gn_6_46340 Lactuca sativa HOM05D006124 ORTHO05D007854 4.5e-192 674.9 392 81.9
Glyma.11G073900 Glycine max HOM05D006124 ORTHO05D007854 1.0e-191 673.7 422 75.8
VMungo1383G3228 Vigna mungo HOM05D006124 ORTHO05D007854 1.7e-191 672.9 419 76.4
Nitab4.5_0000214g0090 Nicotiana tabacum HOM05D006124 ORTHO05D007854 2.2e-191 672.5 420 78.3
Potri.004G113700 Populus trichocarpa HOM05D006124 ORTHO05D007854 1.4e-190 669.8 396 82.1
Peaxi162Scf00272g00827 Petunia axillaris HOM05D006124 ORTHO05D007854 2.5e-190 669.1 402 80.3
CAN.G219.5 Capsicum annuum HOM05D006124 ORTHO05D007854 5.5e-190 667.9 420 78.6
Sabra04G0071700 Salix brachista HOM05D006124 ORTHO05D007854 1.2e-189 666.8 414 78.7
MBI18_g17017_MAGBIO Magnolia biondii HOM05D006124 ORTHO05D007854 2.1e-189 666.0 396 80.1
EL10Ac5g12347 Beta vulgaris HOM05D006124 ORTHO05D007854 5.1e-188 661.4 423 75.4
MSTRG.21138 Avicennia marina HOM05D006124 ORTHO05D007854 8.7e-188 660.6 397 80.4
Migut.D02195 Erythranthe guttata HOM05D006124 ORTHO05D007854 3.3e-187 658.7 418 76.8
PSO541G0641 Papaver somniferum HOM05D006124 ORTHO05D007854 7.4e-187 657.5 421 74.6
PSO384G4530 Papaver somniferum HOM05D006124 ORTHO05D007854 1.6e-186 656.4 421 74.3
ECA233G1948 Erigeron canadensis HOM05D006124 ORTHO05D007854 2.2e-186 656.0 412 78.2
PSO339G3674 Papaver somniferum HOM05D006124 ORTHO05D007854 1.1e-185 653.7 421 74.1
Nitab4.5_0004386g0010 Nicotiana tabacum HOM05D006124 ORTHO05D007854 1.8e-185 652.9 418 77.3
SGA_v2.0_scaffold61G21160 Striga asiatica HOM05D006124 ORTHO05D007854 1.4e-180 636.7 438 71.9
PGR119G0371 Punica granatum HOM05D006124 ORTHO05D007854 5.9e-176 621.3 374 81.3
CiPaw.13G108300 Carya illinoinensis HOM05D006124 ORTHO05D007854 7.7e-176 620.9 376 81.4
Os04g0508900 Oryza sativa ssp. japonica HOM05D006124 ORTHO05D007854 6.7e-172 607.8 395 73.4
unitig_21.g20322 Utricularia gibba HOM05D006124 ORTHO05D007854 8.8e-172 607.4 429 70.2
Zm00001eb077790 Zea mays HOM05D006124 ORTHO05D007854 8.8e-172 607.4 393 75.1
Oeu035057.1 Olea europaea HOM05D006124 ORTHO05D007854 1.3e-170 603.6 382 79.6
DCAR_015555 Daucus carota HOM05D006124 ORTHO05D007854 7.0e-169 597.8 362 81.8
AUR62021039 Chenopodium quinoa HOM05D006124 ORTHO05D007854 5.9e-168 594.7 349 81.7
AUR62018404 Chenopodium quinoa HOM05D006124 ORTHO05D007854 1.3e-167 593.6 345 82.6
SalBow3G1513 Salvia bowleyana HOM05D006124 ORTHO05D007854 2.2e-167 592.8 362 81.2
SEGI_32950 Sequoiadendron giganteum HOM05D006124 ORTHO05D007854 1.7e-162 576.6 408 66.2
Sopen04g024450 Solanum pennellii HOM05D006124 ORTHO05D007854 6.8e-156 554.7 325 80.3
Sc06g0010480 Simmondsia chinensis HOM05D006124 ORTHO05D007854 3.4e-155 552.4 322 79.8
Ah.13g077240 Amaranthus hybridus HOM05D006124 ORTHO05D007854 4.4e-155 552.0 323 79.9
CDE04G2680 Ceratophyllum demersum HOM05D006124 ORTHO05D007854 1.3e-154 550.4 330 80.3
TAR369G0666 Trochodendron aralioides HOM05D006124 ORTHO05D007854 5.4e-153 545.0 335 77.3
MD11G1132000 Malus domestica HOM05D006124 ORTHO05D007854 7.2e-150 534.6 319 79.0
Mapoly0005s0033 Marchantia polymorpha HOM05D006124 ORTHO05D007854 1.4e-148 530.4 407 62.2
Phvul.001G121400 Phaseolus vulgaris HOM05D006124 ORTHO05D007854 1.8e-148 530.0 316 77.8
Pp3c24_6530 Physcomitrium patens HOM05D006124 ORTHO05D007854 2.6e-147 526.2 385 63.4
Peaxi162Scf00106g02220 Petunia axillaris HOM05D006124 ORTHO05D007854 5.7e-147 525.0 408 68.6
CBR_g21234 Chara braunii HOM05D006124 ORTHO05D007854 8.6e-143 511.1 432 56.7
Lj1C682G4 Lonicera japonica HOM05D006124 ORTHO05D007854 3.4e-139 499.2 283 84.8
SMO141G0040 Selaginella moellendorffii HOM05D006124 ORTHO05D007854 4.9e-138 495.4 400 57.5
ATR0580G285 Amborella trichopoda HOM05D006124 ORTHO05D007854 9.2e-137 491.1 317 71.6
Peaxi162Scf00876g00023 Petunia axillaris HOM05D006124 ORTHO05D007854 3.2e-129 466.1 292 78.4
Psat3g079640 Pisum sativum HOM05D006124 ORTHO05D007854 8.1e-125 451.4 267 78.7
BolC5t29103H Brassica oleracea HOM05D006124 ORTHO05D007854 1.2e-104 384.4 318 63.2
Cre03.g179550 Chlamydomonas reinhardtii HOM05D006124 ORTHO05D007854 1.5e-102 377.5 402 46.5
AagrBONN_evm.TU.Sc2ySwM_344.4431 Anthoceros agrestis HOM05D006124 ORTHO05D007854 7.3e-102 375.2 274 60.9
CAN.G1136.1 Capsicum annuum HOM05D006124 ORTHO05D007854 8.1e-101 371.7 247 71.7
PGSC0003DMG401027913 Solanum tuberosum HOM05D006124 ORTHO05D007854 4.5e-99 365.9 249 76.7
MCO11G183 Micromonas commoda HOM05D006124 ORTHO05D007854 1.5e-94 350.9 437 43.2
Solyc08g028693.1 Solanum lycopersicum HOM05D006124 ORTHO05D007854 4.5e-83 312.8 200 76.5
Haze_26481 Corylus avellana HOM05D006124 ORTHO05D007854 3.5e-80 303.1 393 41.5
Cfa026643 Carpinus fangiana HOM05D006124 ORTHO05D007854 1.1e-68 265.0 440 35.7
PRCOL_00001395 Prasinoderma coloniale HOM05D006124 ORTHO05D007854 1.3e-66 258.1 357 40.1
Lj1A187G25 Lonicera japonica HOM05D006124 ORTHO05D007854 1.1e-60 238.4 325 43.4
HPP92_015146 Vanilla planifolia HOM05D006124 ORTHO05D007854 2.6e-30 137.5 99 62.6
BcaC09g51580 Brassica carinata HOM05D006124 ORTHO05D007854 1.6e-27 128.3 93 71.0
Psat6g235520 Pisum sativum HOM05D006124 ORTHO05D001516 5.6e-25 119.8 74 74.3
Peaxi162Scf00876g00016 Petunia axillaris HOM05D006124 ORTHO05D007854 1.8e-23 114.8 96 70.8
Lj1A682T15 Lonicera japonica HOM05D006124 ORTHO05D007854 4.7e-16 90.1 50 72.0
ClCG03G002310 Citrullus lanatus HOM05D006124 ORTHO05D150439 2.2e-13 81.3 134 35.8
ECA247G2464 Erigeron canadensis HOM05D011992 ORTHO05D008321 6.4e-13 79.7 88 52.3
HPP92_015147 Vanilla planifolia HOM05D006124 ORTHO05D007854 2.7e-11 74.3 60 65.0
RcHm_v2.0_Chr5g0060231 Rosa chinensis HOM05D006124 ORTHO05D007854 1.1e-09 68.9 42 78.6
ECA233G1860 Erigeron canadensis HOM05D000013 ORTHO05D000011 2.3e-07 61.2 88 43.2


User provided reference genes

Program Settings