Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 0.0e+00 1514.2 766 100.0
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 6.4e-276 954.1 777 65.8
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 5.4e-275 951.0 753 66.5
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 1.0e-273 946.8 741 67.3
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 1.3e-273 946.4 742 66.8
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 3.9e-273 944.9 747 65.7
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 9.5e-272 940.3 742 66.0
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 6.2e-271 937.6 746 66.0
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 1.1e-270 936.8 744 66.9
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 1.2e-269 933.3 774 64.3
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 2.7e-266 922.2 780 62.9
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 4.6e-266 921.4 744 65.7
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 4.6e-266 921.4 743 65.7
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 3.0e-265 918.7 745 64.8
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 1.5e-264 916.4 741 64.5
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.9e-264 916.0 743 65.3
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 4.3e-264 914.8 780 62.6
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 4.3e-264 914.8 742 65.9
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 4.7e-263 911.4 744 64.8
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 6.2e-263 911.0 782 62.5
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 4.0e-262 908.3 779 62.1
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 5.2e-262 907.9 744 65.3
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 2.0e-261 906.0 779 62.0
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 9.9e-261 903.7 743 63.4
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 2.9e-260 902.1 750 63.5
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 8.4e-260 900.6 787 61.0
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 2.7e-258 895.6 744 64.2
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 2.7e-258 895.6 768 62.0
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 6.0e-258 894.4 750 62.8
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.0e-257 893.6 748 63.4
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 2.5e-256 889.0 748 63.1
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 4.3e-256 888.3 743 63.1
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 8.1e-255 884.0 743 63.9
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.4e-254 883.2 742 63.1
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 3.1e-254 882.1 754 63.0
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 1.2e-253 880.2 783 60.4
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 2.0e-253 879.4 744 62.8
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 7.6e-253 877.5 742 62.5
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 9.9e-253 877.1 751 62.3
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 9.9e-253 877.1 751 63.5
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 4.9e-252 874.8 742 62.4
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 6.4e-252 874.4 743 63.3
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 8.4e-252 874.0 756 60.6
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 8.4e-252 874.0 742 61.7
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 3.2e-251 872.1 742 62.1
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 7.1e-251 870.9 742 61.7
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 2.1e-250 869.4 743 61.1
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 3.5e-250 868.6 741 62.6
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 6.0e-250 867.8 743 63.3
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 7.9e-250 867.5 863 56.3
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 2.3e-249 865.9 741 62.3
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 3.0e-249 865.5 741 62.5
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 3.0e-249 865.5 742 61.5
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 3.0e-249 865.5 741 61.8
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 4.8e-247 858.2 742 62.4
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 2.4e-246 855.9 741 61.9
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 5.8e-245 851.3 742 61.1
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 2.2e-244 849.4 748 61.2
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 4.9e-244 848.2 742 61.7
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 1.1e-243 847.0 747 62.0
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 9.3e-243 844.0 745 61.6
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 4.6e-242 841.6 791 58.5
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 2.3e-241 839.3 742 61.7
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 5.1e-241 838.2 749 60.5
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 5.6e-240 834.7 742 62.0
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 2.1e-239 832.8 742 60.2
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 2.1e-239 832.8 742 60.2
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 2.8e-239 832.4 742 60.2
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 1.1e-238 830.5 742 60.4
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 3.4e-237 825.5 742 60.1
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 7.6e-237 824.3 742 59.7
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 1.0e-236 823.9 742 60.1
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 2.2e-236 822.8 742 60.0
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 2.2e-236 822.8 756 58.6
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 1.1e-235 820.5 759 59.0
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 1.9e-235 819.7 742 58.6
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 1.9e-235 819.7 743 60.0
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 3.2e-235 818.9 745 59.6
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 7.1e-235 817.8 741 59.1
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 2.1e-234 816.2 745 59.3
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 3.3e-232 808.9 697 61.4
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 2.2e-231 806.2 743 59.5
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 2.2e-231 806.2 742 59.8
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 4.1e-230 802.0 743 59.2
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 2.6e-229 799.3 750 57.6
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 1.7e-228 796.6 741 58.7
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 5.0e-228 795.0 747 58.5
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 2.5e-227 792.7 865 52.6
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 2.9e-220 769.2 743 56.5
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 4.8e-215 751.9 743 55.2
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 6.3e-215 751.5 751 55.8
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 5.9e-213 745.0 781 54.7
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 4.8e-207 725.3 743 51.5
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 6.1e-202 708.4 643 58.3
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 5.2e-201 705.3 751 53.1
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 6.1e-194 681.8 769 51.5
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 4.8e-191 672.2 772 50.6
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 1.5e-184 650.6 650 55.7
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 2.3e-172 610.1 509 61.9
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 1.6e-138 497.7 771 43.1
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 4.5e-136 489.6 784 40.8
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 9.6e-131 471.9 619 47.7
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 3.2e-126 456.8 403 60.3
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 3.9e-124 449.9 354 64.7
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 5.8e-120 436.0 774 37.7
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 1.0e-119 435.3 764 38.5
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 6.3e-114 416.0 439 50.6
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 5.0e-79 300.1 858 30.8
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 3.1e-73 280.8 221 66.1
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 5.9e-72 276.6 351 47.9
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 6.4e-58 229.9 723 30.4
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 4.7e-53 213.8 187 59.9
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 4.0e-44 184.1 373 36.5
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 8.9e-44 183.0 108 79.6
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 3.4e-43 181.0 106 83.0
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 3.4e-43 181.0 237 45.6
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 1.1e-28 132.9 210 42.9
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 3.2e-25 121.3 151 48.3
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 8.1e-21 106.7 73 69.9
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 2.0e-19 102.1 685 24.2
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 4.9e-18 97.4 63 73.0
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.4e-12 78.6 46 78.3
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 3.8e-10 71.2 104 36.5
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 5.5e-09 67.4 88 37.5
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 7.1e-09 67.0 98 40.8
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 7.1e-09 67.0 81 40.7
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 1.6e-08 65.9 90 41.1
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 1.0e-07 63.2 62 48.4
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.3e-07 62.8 63 46.0
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 1.8e-07 62.4 63 46.0
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 3.0e-07 61.6 63 44.4
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 3.9e-07 61.2 94 36.2
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 5.1e-07 60.8 68 42.6
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 5.1e-07 60.8 88 36.4
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 6.7e-07 60.5 69 42.0
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 8.7e-07 60.1 63 42.9
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 8.7e-07 60.1 92 34.8
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 8.7e-07 60.1 63 50.8
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 1.1e-06 59.7 81 38.3
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.1e-06 59.7 75 41.3
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 1.1e-06 59.7 63 41.3
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 1.5e-06 59.3 61 47.5
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 2.5e-06 58.5 64 43.8
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 4.3e-06 57.8 55 50.9
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 5.7e-06 57.4 62 45.2
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 5.7e-06 57.4 61 42.6
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 5.7e-06 57.4 63 42.9
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 5.7e-06 57.4 61 45.9
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 7.4e-06 57.0 64 42.2
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 7.4e-06 57.0 61 45.9
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 7.4e-06 57.0 63 42.9


User provided reference genes

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