Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 7.7e-112 407.1 203 100.0
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 6.6e-95 350.9 202 83.7
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.5e-94 349.0 202 83.2
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 5.5e-94 347.8 202 83.7
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.2e-93 346.7 202 83.2
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.6e-93 346.3 202 82.7
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 2.8e-93 345.5 202 83.2
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 3.6e-93 345.1 202 82.7
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 1.0e-92 343.6 202 81.7
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 5.2e-92 341.3 191 86.4
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 3.4e-91 338.6 202 80.2
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 4.4e-91 338.2 191 84.8
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 7.5e-91 337.4 202 80.7
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 7.5e-91 337.4 202 80.7
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 7.5e-91 337.4 202 80.7
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 7.5e-91 337.4 202 81.7
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 9.8e-91 337.0 202 80.7
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 1.7e-90 336.3 202 79.7
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 1.7e-90 336.3 202 81.2
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 2.9e-90 335.5 202 80.7
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 4.9e-90 334.7 202 82.2
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 4.9e-90 334.7 202 79.2
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 6.3e-90 334.3 202 80.7
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 1.1e-89 333.6 202 80.2
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 1.4e-89 333.2 190 82.6
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 1.4e-89 333.2 191 83.2
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 1.8e-89 332.8 202 80.2
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 2.4e-89 332.4 202 81.2
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 3.2e-89 332.0 202 80.2
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 4.1e-89 331.6 202 80.2
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 5.4e-89 331.3 202 79.2
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 5.4e-89 331.3 202 79.2
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 5.4e-89 331.3 196 83.7
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 7.0e-89 330.9 202 80.2
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 9.2e-89 330.5 197 81.7
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.2e-88 330.1 201 78.1
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.0e-88 329.3 191 82.7
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 2.0e-88 329.3 202 81.2
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 2.7e-88 328.9 202 80.2
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 2.7e-88 328.9 202 80.2
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 2.7e-88 328.9 201 77.6
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 4.6e-88 328.2 235 71.9
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 4.6e-88 328.2 191 82.2
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 4.6e-88 328.2 202 79.2
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 5.9e-88 327.8 202 80.2
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.9e-88 327.8 193 81.3
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 7.8e-88 327.4 202 79.2
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 7.8e-88 327.4 201 78.6
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.3e-87 326.6 201 78.1
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.7e-87 326.2 198 81.3
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.7e-87 326.2 202 78.2
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.3e-87 325.9 191 82.2
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 2.9e-87 325.5 202 80.2
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 8.6e-87 323.9 202 77.7
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.5e-86 323.2 202 74.8
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 1.9e-86 322.8 202 78.7
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.9e-86 322.8 191 80.6
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.9e-86 322.8 203 77.3
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.5e-86 322.4 195 79.5
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.3e-86 322.0 202 78.2
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 3.3e-86 322.0 202 78.2
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.2e-85 320.1 183 85.8
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.2e-85 320.1 195 78.5
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 3.6e-85 318.5 191 80.1
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 4.7e-85 318.2 202 77.7
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 8.0e-85 317.4 203 77.3
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 8.0e-85 317.4 203 80.3
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.0e-84 317.0 197 78.2
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.4e-84 316.6 202 76.7
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 1.8e-84 316.2 202 76.7
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 1.8e-84 316.2 202 76.7
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 2.3e-84 315.8 202 77.7
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 2.3e-84 315.8 202 77.7
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 2.3e-84 315.8 202 77.7
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 3.1e-84 315.5 174 87.9
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 4.0e-84 315.1 197 77.2
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 4.0e-84 315.1 191 79.1
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.2e-83 313.5 221 71.0
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.5e-83 313.2 202 76.2
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.5e-83 313.2 189 80.4
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 1.5e-83 313.2 194 78.9
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.0e-83 312.8 202 75.7
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 2.0e-83 312.8 202 75.7
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 2.6e-83 312.4 202 76.7
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 2.6e-83 312.4 174 86.8
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.4e-83 312.0 202 75.2
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 7.5e-83 310.8 202 76.7
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 9.8e-83 310.5 193 77.2
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 2.2e-82 309.3 195 74.9
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 2.9e-82 308.9 202 76.2
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 4.9e-82 308.1 202 76.2
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 8.3e-82 307.4 202 76.7
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.1e-81 307.0 227 69.2
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.4e-81 306.6 202 74.8
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 3.2e-81 305.4 202 75.7
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.7e-79 299.7 202 72.3
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.7e-79 299.7 246 63.0
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 3.9e-79 298.5 302 54.6
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 5.0e-79 298.1 174 81.6
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 8.6e-79 297.4 194 74.7
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 4.7e-77 291.6 245 64.1
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.9e-73 279.6 176 76.1
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.2e-72 276.9 160 82.5
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.6e-72 276.6 204 70.1
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.6e-72 275.0 167 79.0
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.3e-71 273.5 171 78.4
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.3e-71 273.5 202 69.3
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.2e-69 266.9 153 83.7
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 2.3e-68 262.7 202 68.3
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 1.9e-65 253.1 204 66.7
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 3.5e-64 248.8 201 60.7
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 3.9e-63 245.4 195 62.1
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 2.5e-62 242.7 145 78.6
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 8.4e-58 227.6 187 58.3
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 1.5e-54 216.9 133 79.7
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 2.4e-52 209.5 125 80.0
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 9.9e-51 204.1 112 85.7
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 5.4e-49 198.4 131 73.3
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 6.6e-47 191.4 170 59.4
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.1e-44 184.1 156 58.3
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.1e-44 184.1 157 60.5
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.7e-42 176.8 190 47.9
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.0e-39 166.0 102 77.5
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.0e-39 166.0 102 77.5
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.8e-34 149.1 88 80.7
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 1.4e-33 147.1 194 44.3
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 3.5e-32 142.5 81 84.0
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 2.3e-31 139.8 82 79.3
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 1.9e-30 136.7 82 81.7
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 7.4e-30 134.8 111 64.9
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 1.4e-28 130.6 142 47.9
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 2.4e-28 129.8 81 77.8
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 5.3e-28 128.6 81 77.8
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 2.0e-27 126.7 85 69.4
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.7e-26 123.6 85 61.2
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 6.5e-26 121.7 86 68.6
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 3.5e-24 115.9 88 62.5
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 8.7e-23 111.3 106 57.5
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.5e-22 110.5 67 80.6
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 4.3e-22 109.0 200 36.5
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 1.0e-18 97.8 169 35.5
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.3e-18 97.4 65 69.2
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 2.9e-18 96.3 73 61.6
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 5.0e-18 95.5 51 86.3
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 8.5e-18 94.7 62 72.6
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 9.4e-17 91.3 62 72.6
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 8.8e-15 84.7 62 67.7
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 5.7e-14 82.0 66 65.2
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 2.5e-09 66.6 36 86.1
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.7e-08 63.2 33 84.8
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 7.9e-08 61.6 33 78.8
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 3.0e-07 59.7 30 90.0
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 7.4e-06 55.1 72 44.4


User provided reference genes

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