Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c33573 Carica papaya HOM05D002182 ORTHO05D017531 1.4e-72 276.2 137 100.0
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 3.5e-23 112.1 79 68.4
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 7.7e-23 110.9 77 70.1
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 3.8e-22 108.6 77 68.8
Sabra05G0055200 Salix brachista HOM05D002182 ORTHO05D004671 3.8e-22 108.6 85 63.5
CSS0000135 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D017531 4.7e-20 101.7 76 69.7
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 8.0e-20 100.9 79 67.1
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 1.8e-19 99.8 76 61.8
Actinidia20028 Actinidia chinensis HOM05D002182 ORTHO05D004671 5.2e-19 98.2 76 68.4
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 5.2e-19 98.2 84 64.3
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 6.8e-19 97.8 79 63.3
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 6.8e-19 97.8 79 62.0
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 6.8e-19 97.8 82 64.6
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 1.5e-18 96.7 78 61.5
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 2.6e-18 95.9 82 63.4
AUR62006857 Chenopodium quinoa HOM05D002182 ORTHO05D004671 4.4e-18 95.1 97 50.5
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 5.7e-18 94.7 77 61.0
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 5.7e-18 94.7 82 63.4
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 1.3e-17 93.6 77 59.7
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 2.8e-17 92.4 85 57.6
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 2.8e-17 92.4 77 58.4
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 3.7e-17 92.0 85 57.6
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 3.7e-17 92.0 79 59.5
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 3.7e-17 92.0 77 59.7
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 4.8e-17 91.7 76 65.8
Haze_25328 Corylus avellana HOM05D002182 ORTHO05D017531 4.8e-17 91.7 79 59.5
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 1.4e-16 90.1 82 61.0
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 2.4e-16 89.4 78 62.8
Oeu050090.2 Olea europaea HOM05D002182 ORTHO05D004671 5.3e-16 88.2 77 62.3
Medtr3g096640 Medicago truncatula HOM05D002182 ORTHO05D004671 7.7e-15 84.3 88 58.0
Psat5g060640 Pisum sativum HOM05D002182 ORTHO05D004671 7.7e-15 84.3 81 61.7
Rhsim10G0124100 Rhododendron simsii HOM05D002182 ORTHO05D004671 1.3e-14 83.6 78 53.8
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 1.7e-14 83.2 77 62.3
Sc16g0009510 Simmondsia chinensis HOM05D002182 ORTHO05D004671 2.9e-14 82.4 78 53.8
vmacro12745 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 2.9e-14 82.4 80 55.0
Ah.06g191020 Amaranthus hybridus HOM05D002182 ORTHO05D004671 1.5e-13 80.1 90 54.4
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 1.5e-13 80.1 85 54.1
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 2.5e-13 79.3 77 55.8
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 4.2e-13 78.6 84 59.5
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 4.2e-13 78.6 77 55.8
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 1.2e-12 77.0 77 59.7
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 2.1e-12 76.3 78 57.7
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 2.1e-12 76.3 80 57.5
Ca_16979_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 2.7e-12 75.9 87 52.9
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 2.7e-12 75.9 82 53.7
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 3.6e-12 75.5 76 56.6
Prupe.4G275500 Prunus persica HOM05D002182 ORTHO05D004671 3.6e-12 75.5 77 51.9
TAR376G0522 Trochodendron aralioides HOM05D002182 ORTHO05D004671 3.6e-12 75.5 79 51.9
BolC3t18503H Brassica oleracea HOM05D002182 ORTHO05D017531 4.7e-12 75.1 80 50.0
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 6.1e-12 74.7 79 51.9
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 3.0e-11 72.4 77 54.5
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 5.2e-11 71.6 94 50.0
Migut.H00803 Erythranthe guttata HOM05D002182 ORTHO05D004671 8.8e-11 70.9 77 49.4
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 2.0e-10 69.7 85 52.9
HanXRQChr01g0016921 Helianthus annuus HOM05D002182 ORTHO05D004671 2.0e-10 69.7 34 82.4
FAN19G2097 Fragaria x ananassa HOM05D002182 ORTHO05D004671 4.4e-10 68.6 38 76.3
Nitab4.5_0001277g0010 Nicotiana tabacum HOM05D002182 ORTHO05D004671 7.5e-10 67.8 77 51.9
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 1.3e-09 67.0 33 81.8
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 1.3e-09 67.0 33 81.8
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 1.3e-09 67.0 33 81.8
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 1.7e-09 66.6 32 81.2
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 1.7e-09 66.6 32 81.2
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 1.7e-09 66.6 32 81.2
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 1.7e-09 66.6 31 83.9
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 3.7e-09 65.5 31 83.9
ECA248G2894 Erigeron canadensis HOM05D002182 ORTHO05D004671 4.8e-09 65.1 76 47.4
A06p30540 Brassica napus HOM05D002182 ORTHO05D017531 6.3e-09 64.7 81 48.1
BraA06t26003Z Brassica rapa HOM05D002182 ORTHO05D017531 6.3e-09 64.7 81 48.1
SGA_v2.0_scaffold54G19590 Striga asiatica HOM05D002182 ORTHO05D004671 6.3e-09 64.7 84 52.4
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 8.3e-09 64.3 35 74.3
C02p63020 Brassica napus HOM05D002182 ORTHO05D017531 8.3e-09 64.3 81 46.9
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 8.3e-09 64.3 92 46.7
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 1.1e-08 63.9 33 78.8
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 3.1e-08 62.4 80 48.8
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 5.4e-08 61.6 30 80.0
CDE09G0036 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 7.0e-08 61.2 86 45.3
Sed0010212 Sechium edule HOM05D002182 ORTHO05D004671 1.2e-07 60.5 82 50.0
HPP92_005917 Vanilla planifolia HOM05D002182 ORTHO05D004671 2.7e-07 59.3 81 48.1
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 3.5e-07 58.9 78 48.7
BcaC01g02646 Brassica carinata HOM05D002182 ORTHO05D017531 1.3e-06 57.0 80 42.5
SEGI_24428 Sequoiadendron giganteum HOM05D002182 ORTHO05D017531 2.9e-06 55.8 63 52.4
PGR102G1182 Punica granatum HOM05D002182 ORTHO05D004671 6.6e-06 54.7 79 49.4
Os03g0165000 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D004671 8.6e-06 54.3 33 66.7
Zm00001eb005010 Zea mays HOM05D002182 ORTHO05D004671 8.6e-06 54.3 79 49.4


User provided reference genes

Program Settings