Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c32688 Carica papaya HOM05D004511 ORTHO05D005348 1.6e-16 88.2 40 100.0
MSTRG.9851 Avicennia marina HOM05D004511 ORTHO05D005348 1.3e-15 85.1 40 92.5
CiPaw.01G177000 Carya illinoinensis HOM05D004511 ORTHO05D005348 1.3e-15 85.1 40 92.5
Eucgr.H02905 Eucalyptus grandis HOM05D004511 ORTHO05D005348 1.3e-15 85.1 40 92.5
GSVIVG01027931001 Vitis vinifera HOM05D004511 ORTHO05D005348 1.3e-15 85.1 40 92.5
Actinidia27093 Actinidia chinensis HOM05D004511 ORTHO05D005348 1.7e-15 84.7 40 90.0
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 2.3e-15 84.3 40 92.5
PSO210G5810 Papaver somniferum HOM05D004511 ORTHO05D005348 2.9e-15 84.0 40 92.5
CSS0023992 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 3.8e-15 83.6 40 90.0
CSS0045058 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 3.8e-15 83.6 40 90.0
Cc03_g06420 Coffea canephora HOM05D004511 ORTHO05D005348 3.8e-15 83.6 40 90.0
COL.COLO4_15984 Corchorus olitorius HOM05D004511 ORTHO05D005348 3.8e-15 83.6 40 90.0
Duzib151G0197 Durio zibethinus HOM05D004511 ORTHO05D005348 3.8e-15 83.6 40 90.0
Lalb_Chr02g0150721 Lupinus albus HOM05D004511 ORTHO05D005348 3.8e-15 83.6 40 90.0
Nn1g02989 Nelumbo nucifera HOM05D004511 ORTHO05D005348 3.8e-15 83.6 40 92.5
Psat6g108520 Pisum sativum HOM05D004511 ORTHO05D005348 3.8e-15 83.6 40 87.5
Atru.chr4.1900 Acer truncatum HOM05D004511 ORTHO05D005348 5.0e-15 83.2 40 90.0
Ah.01g020260 Amaranthus hybridus HOM05D004511 ORTHO05D005348 5.0e-15 83.2 40 87.5
FvH4_4g05000 Fragaria vesca HOM05D004511 ORTHO05D005348 5.0e-15 83.2 40 90.0
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 5.0e-15 83.2 40 90.0
Potri.010G065000 Populus trichocarpa HOM05D004511 ORTHO05D005348 5.0e-15 83.2 40 87.5
RcHm_v2.0_Chr4g0395811 Rosa chinensis HOM05D004511 ORTHO05D005348 5.0e-15 83.2 40 90.0
Gohir.A09G230900 Gossypium hirsutum HOM05D004511 ORTHO05D005348 6.6e-15 82.8 40 87.5
Gohir.D09G232000 Gossypium hirsutum HOM05D004511 ORTHO05D005348 6.6e-15 82.8 40 87.5
Gorai.006G254800 Gossypium raimondii HOM05D004511 ORTHO05D005348 6.6e-15 82.8 40 87.5
MD13G1223200 Malus domestica HOM05D004511 ORTHO05D005348 6.6e-15 82.8 40 87.5
Prupe.1G050200 Prunus persica HOM05D004511 ORTHO05D005348 6.6e-15 82.8 40 87.5
PGR004G0717 Punica granatum HOM05D004511 ORTHO05D005348 6.6e-15 82.8 40 90.0
Thecc.04G266800 Theobroma cacao HOM05D004511 ORTHO05D005348 6.6e-15 82.8 40 87.5
Aa31LG8G11050 Aethionema arabicum HOM05D004511 ORTHO05D005348 8.6e-15 82.4 40 87.5
AL2G22890 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 8.6e-15 82.4 40 87.5
Carub.0003s2466 Capsella rubella HOM05D004511 ORTHO05D005348 8.6e-15 82.4 40 87.5
AUR62011461 Chenopodium quinoa HOM05D004511 ORTHO05D005348 8.6e-15 82.4 40 87.5
AUR62016594 Chenopodium quinoa HOM05D004511 ORTHO05D005348 8.6e-15 82.4 40 87.5
Haze_11474 Corylus avellana HOM05D004511 ORTHO05D005348 8.6e-15 82.4 40 87.5
Oeu061869.1 Olea europaea HOM05D004511 ORTHO05D005348 8.6e-15 82.4 40 87.5
QL06p021350 Quercus lobata HOM05D004511 ORTHO05D005348 8.6e-15 82.4 40 87.5
THA.LOC104821629 Tarenaya hassleriana HOM05D004511 ORTHO05D005348 8.6e-15 82.4 40 87.5
AL3G39770 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 1.1e-14 82.0 40 85.0
AT3G24320 Arabidopsis thaliana HOM05D004511 ORTHO05D005348 1.1e-14 82.0 40 85.0
EL10Ac9g21855 Beta vulgaris HOM05D004511 ORTHO05D005348 1.1e-14 82.0 40 87.5
A07p07990 Brassica napus HOM05D004511 ORTHO05D005348 1.1e-14 82.0 40 85.0
BraA07t28586Z Brassica rapa HOM05D004511 ORTHO05D005348 1.1e-14 82.0 40 85.0
Ca_11884_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 1.1e-14 82.0 40 85.0
Sp3g22130 Schrenkiella parvula HOM05D004511 ORTHO05D005348 1.1e-14 82.0 40 85.0
SGA_v2.0_scaffold67G22677 Striga asiatica HOM05D004511 ORTHO05D005348 1.1e-14 82.0 40 85.0
unitig_747.g21671 Utricularia gibba HOM05D004511 ORTHO05D005348 1.1e-14 82.0 40 87.5
vmacro08561 Vaccinium macrocarpon HOM05D004511 ORTHO05D005348 1.1e-14 82.0 40 87.5
arahy.Tifrunner.gnm1.ann1.QET6JI Arachis hypogaea HOM05D004511 ORTHO05D005348 1.5e-14 81.6 40 85.0
CANSAT78G2334 Cannabis sativa HOM05D004511 ORTHO05D005348 1.5e-14 81.6 40 87.5
Ciclev10004190m.g Citrus clementina HOM05D004511 ORTHO05D005348 1.5e-14 81.6 40 87.5
Migut.G00563 Erythranthe guttata HOM05D004511 ORTHO05D005348 1.5e-14 81.6 40 85.0
Lj6A637T62 Lonicera japonica HOM05D004511 ORTHO05D005348 1.5e-14 81.6 40 87.5
Medtr1g045670 Medicago truncatula HOM05D004511 ORTHO05D005348 1.5e-14 81.6 40 85.0
Rhsim04G0171100 Rhododendron simsii HOM05D004511 ORTHO05D005348 1.5e-14 81.6 40 85.0
Thhalv10002376m.g Eutrema salsugineum HOM05D004511 ORTHO05D005348 1.9e-14 81.3 40 82.5
Glyma.10G130700 Glycine max HOM05D004511 ORTHO05D005348 1.9e-14 81.3 40 90.0
Nitab4.5_0001041g0180 Nicotiana tabacum HOM05D004511 ORTHO05D005348 1.9e-14 81.3 40 85.0
Aqoxy5G00136 Aquilegia oxysepala HOM05D004511 ORTHO05D005348 2.5e-14 80.9 40 85.0
Nitab4.5_0005154g0040 Nicotiana tabacum HOM05D004511 ORTHO05D005348 2.5e-14 80.9 40 85.0
Sopen09g033830 Solanum pennellii HOM05D004511 ORTHO05D005348 2.5e-14 80.9 40 85.0
BcaC06g35683 Brassica carinata HOM05D004511 ORTHO05D005348 3.3e-14 80.5 40 85.0
C07p12050 Brassica napus HOM05D004511 ORTHO05D005348 3.3e-14 80.5 40 85.0
BolC7t41673H Brassica oleracea HOM05D004511 ORTHO05D005348 3.3e-14 80.5 40 85.0
Lj6g0021678 Lotus japonicus HOM05D004511 ORTHO05D005348 3.3e-14 80.5 40 87.5
PSO170G1037 Papaver somniferum HOM05D004511 ORTHO05D005348 3.3e-14 80.5 40 87.5
Hund00475 Selenicereus undatus HOM05D004511 ORTHO05D005348 3.3e-14 80.5 40 85.0
Sc11g0002730 Simmondsia chinensis HOM05D004511 ORTHO05D005348 3.3e-14 80.5 40 82.5
Solyc09g090870.3 Solanum lycopersicum HOM05D004511 ORTHO05D005348 3.3e-14 80.5 40 85.0
TWI73G0808 Tripterygium wilfordii HOM05D004511 ORTHO05D005348 3.3e-14 80.5 40 82.5
arahy.Tifrunner.gnm1.ann1.Z900IQ Arachis hypogaea HOM05D004511 ORTHO05D005348 4.3e-14 80.1 40 82.5
CARHR100420 Cardamine hirsuta HOM05D004511 ORTHO05D005348 4.3e-14 80.1 40 80.0
Os04g0507000 Oryza sativa ssp. japonica HOM05D004511 ORTHO05D005348 4.3e-14 80.1 40 82.5
TAR365G1143 Trochodendron aralioides HOM05D004511 ORTHO05D005348 4.3e-14 80.1 40 82.5
VMungo0720G1651 Vigna mungo HOM05D004511 ORTHO05D005348 7.3e-14 79.3 40 87.5
BcaB06g26614 Brassica carinata HOM05D004511 ORTHO05D005348 9.5e-14 79.0 40 82.5
Zm00001eb426210 Zea mays HOM05D004511 ORTHO05D005348 9.5e-14 79.0 40 82.5
Dinv29796 Davidia involucrata HOM05D004511 ORTHO05D005348 1.2e-13 78.6 40 85.0
ClCG05G003940 Citrullus lanatus HOM05D004511 ORTHO05D005348 1.6e-13 78.2 40 82.5
MELO3C006369.2 Cucumis melo HOM05D004511 ORTHO05D005348 1.6e-13 78.2 40 82.5
CsaV3_3G011610 Cucumis sativus L. HOM05D004511 ORTHO05D005348 1.6e-13 78.2 40 82.5
ECA248G2418 Erigeron canadensis HOM05D004511 ORTHO05D005348 1.6e-13 78.2 40 77.5
CDE08G1007 Ceratophyllum demersum HOM05D004511 ORTHO05D005348 2.1e-13 77.8 40 77.5
Phvul.007G232900 Phaseolus vulgaris HOM05D004511 ORTHO05D005348 2.1e-13 77.8 40 85.0
Sed0014740 Sechium edule HOM05D004511 ORTHO05D005348 2.1e-13 77.8 40 80.0
HanXRQChr06g0182821 Helianthus annuus HOM05D004511 ORTHO05D005348 2.8e-13 77.4 40 80.0
SEGI_11740 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 6.1e-13 76.3 40 75.0
SEGI_26830 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 6.1e-13 76.3 40 75.0
Lsat_1_v5_gn_2_41221 Lactuca sativa HOM05D004511 ORTHO05D005348 8.0e-13 75.9 40 77.5
Ca_07387_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 1.0e-12 75.5 40 80.0
Ca_26419_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 1.0e-12 75.5 40 80.0
Ca_30594_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 1.0e-12 75.5 40 80.0
Glyma.20G073500 Glycine max HOM05D004511 ORTHO05D005348 1.0e-12 75.5 40 80.0
HPP92_015182 Vanilla planifolia HOM05D004511 ORTHO05D005348 1.0e-12 75.5 40 77.5
ATR0787G210 Amborella trichopoda HOM05D004511 ORTHO05D005348 4.0e-12 73.6 40 72.5
Glyma.10G121560 Glycine max HOM05D004511 ORTHO05D005348 5.2e-12 73.2 40 77.5
Glyma.10G121584 Glycine max HOM05D004511 ORTHO05D005348 5.2e-12 73.2 40 77.5
HanXRQChr01g0023051 Helianthus annuus HOM05D004511 ORTHO05D005348 6.8e-12 72.8 40 67.5
Mapoly0067s0046 Marchantia polymorpha HOM05D004511 ORTHO05D005348 6.8e-12 72.8 40 67.5
SHI00817 Sapria himalayana HOM05D004511 ORTHO05D005348 8.9e-12 72.4 40 77.5
Glyma.10G121600 Glycine max HOM05D004511 ORTHO05D005348 1.2e-11 72.0 40 77.5
Glyma.10G121578 Glycine max HOM05D004511 ORTHO05D005348 1.5e-11 71.6 40 77.5
Peaxi162Scf00531g00610 Petunia axillaris HOM05D004511 ORTHO05D005348 9.8e-11 68.9 35 82.9
SMO364G0324 Selaginella moellendorffii HOM05D004511 ORTHO05D005348 2.9e-10 67.4 39 64.1
Pp3c8_22090 Physcomitrium patens HOM05D004511 ORTHO05D005348 1.6e-08 61.6 39 64.1
PRCOL_00002937 Prasinoderma coloniale HOM05D004511 ORTHO05D005348 4.6e-08 60.1 39 61.5
Pp3c23_17640 Physcomitrium patens HOM05D004511 ORTHO05D005348 8.6e-07 55.8 38 57.9
MCO07G727 Micromonas commoda HOM05D004511 ORTHO05D005348 9.5e-06 52.4 40 60.0


User provided reference genes

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