Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c29031.3 Carica papaya HOM05D006159 ORTHO05D007624 2.4e-105 385.6 201 100.0
Gohir.A03G024400 Gossypium hirsutum HOM05D006159 ORTHO05D007624 2.0e-80 302.8 185 81.1
Gorai.003G151400 Gossypium raimondii HOM05D006159 ORTHO05D007624 7.7e-80 300.8 185 80.5
CiPaw.13G066700 Carya illinoinensis HOM05D006159 ORTHO05D007624 1.7e-79 299.7 201 76.1
Thecc.09G360700 Theobroma cacao HOM05D006159 ORTHO05D007624 1.1e-78 297.0 201 72.6
COL.COLO4_11182 Corchorus olitorius HOM05D006159 ORTHO05D007624 1.9e-78 296.2 203 72.4
Duzib168G0394 Durio zibethinus HOM05D006159 ORTHO05D007624 4.2e-78 295.0 176 80.1
CANSAT54G0267 Cannabis sativa HOM05D006159 ORTHO05D007624 4.0e-76 288.5 198 74.2
CiPaw.14G053000 Carya illinoinensis HOM05D006159 ORTHO05D007624 5.2e-76 288.1 201 72.6
RcHm_v2.0_Chr5g0072261 Rosa chinensis HOM05D006159 ORTHO05D007624 5.2e-76 288.1 186 74.7
Prupe.6G045100 Prunus persica HOM05D006159 ORTHO05D007624 8.8e-76 287.3 201 75.1
Atru.chr1.2561 Acer truncatum HOM05D006159 ORTHO05D007624 1.2e-75 287.0 201 75.1
Hma1.2p1_1586F.1_g292125 Hydrangea macrophylla HOM05D006159 ORTHO05D007624 1.5e-75 286.6 193 76.2
Dinv28707 Davidia involucrata HOM05D006159 ORTHO05D007624 7.5e-75 284.3 192 76.0
Haze_24438 Corylus avellana HOM05D006159 ORTHO05D007624 9.7e-75 283.9 179 77.7
FvH4_3g40070 Fragaria vesca HOM05D006159 ORTHO05D007624 9.7e-75 283.9 186 74.2
Potri.013G154200 Populus trichocarpa HOM05D006159 ORTHO05D007624 9.7e-75 283.9 201 71.6
FAN21G3656 Fragaria x ananassa HOM05D006159 ORTHO05D007624 2.8e-74 282.3 186 74.2
MD11G1060800 Malus domestica HOM05D006159 ORTHO05D007624 2.8e-74 282.3 200 74.5
TAR633G1181 Trochodendron aralioides HOM05D006159 ORTHO05D007624 2.8e-74 282.3 194 71.6
FAN11G2758 Fragaria x ananassa HOM05D006159 ORTHO05D007624 3.7e-74 282.0 186 73.7
FAN16G1196 Fragaria x ananassa HOM05D006159 ORTHO05D007624 3.7e-74 282.0 186 73.7
Sabra13G0124000 Salix brachista HOM05D006159 ORTHO05D007624 1.1e-73 280.4 201 69.2
CSS0020536 Camellia sinensis var. sinensis HOM05D006159 ORTHO05D007624 4.1e-73 278.5 183 73.8
FAN25G2364 Fragaria x ananassa HOM05D006159 ORTHO05D007624 4.1e-73 278.5 186 73.1
Manes.18G138800 Manihot esculenta HOM05D006159 ORTHO05D007624 5.3e-73 278.1 198 72.7
Phvul.008G250100 Phaseolus vulgaris HOM05D006159 ORTHO05D007624 2.0e-72 276.2 193 69.9
CSS0033482 Camellia sinensis var. sinensis HOM05D006159 ORTHO05D007624 3.5e-72 275.4 183 73.2
TWI31G0474 Tripterygium wilfordii HOM05D006159 ORTHO05D007624 4.5e-72 275.0 175 77.1
Ciclev10003830m.g Citrus clementina HOM05D006159 ORTHO05D007624 1.0e-71 273.9 186 74.7
THA.LOC104800779 Tarenaya hassleriana HOM05D006159 ORTHO05D007624 1.3e-71 273.5 178 74.2
arahy.Tifrunner.gnm1.ann1.3A3S4A Arachis hypogaea HOM05D006159 ORTHO05D007624 2.9e-71 272.3 180 71.7
Actinidia23185 Actinidia chinensis HOM05D006159 ORTHO05D007624 3.8e-71 271.9 179 75.4
Rhsim13G0062400 Rhododendron simsii HOM05D006159 ORTHO05D007624 8.5e-71 270.8 172 76.2
Glyma.02G233600 Glycine max HOM05D006159 ORTHO05D007624 1.1e-70 270.4 192 68.2
GSVIVG01024604001 Vitis vinifera HOM05D006159 ORTHO05D007624 1.9e-70 269.6 197 69.0
Medtr5g074640 Medicago truncatula HOM05D006159 ORTHO05D007624 2.5e-70 269.2 186 71.0
VMungo0647G0641 Vigna mungo HOM05D006159 ORTHO05D007624 2.5e-70 269.2 192 67.7
Lalb_Chr10g0103671 Lupinus albus HOM05D006159 ORTHO05D007624 7.2e-70 267.7 185 69.7
Eucgr.J03050 Eucalyptus grandis HOM05D006159 ORTHO05D007624 1.2e-69 266.9 201 66.7
QL01p025515 Quercus lobata HOM05D006159 ORTHO05D007624 1.2e-69 266.9 229 61.1
arahy.Tifrunner.gnm1.ann1.N5JXUH Arachis hypogaea HOM05D006159 ORTHO05D007624 3.6e-69 265.4 182 71.4
Rhsim01G0241600 Rhododendron simsii HOM05D006159 ORTHO05D007624 4.7e-69 265.0 175 72.6
Ca_05688_v3 Cicer arietinum L. HOM05D006159 ORTHO05D007624 8.0e-69 264.2 186 68.3
vmacro14626 Vaccinium macrocarpon HOM05D006159 ORTHO05D007624 8.0e-69 264.2 175 74.3
Glyma.02G233500 Glycine max HOM05D006159 ORTHO05D007624 1.0e-68 263.8 186 67.7
vmacro02902 Vaccinium macrocarpon HOM05D006159 ORTHO05D007624 1.4e-68 263.5 172 74.4
Lalb_Chr17g0345491 Lupinus albus HOM05D006159 ORTHO05D007624 1.8e-68 263.1 193 65.3
Psat2g052680 Pisum sativum HOM05D006159 ORTHO05D007624 1.8e-68 263.1 185 67.6
arahy.Tifrunner.gnm1.ann1.9T2ABX Arachis hypogaea HOM05D006159 ORTHO05D007624 2.3e-68 262.7 175 72.0
SGA_v2.0_scaffold5G02753 Striga asiatica HOM05D006159 ORTHO05D007624 3.0e-68 262.3 189 67.7
Aqoxy4G02147 Aquilegia oxysepala HOM05D006159 ORTHO05D007624 5.2e-68 261.5 196 66.8
Lj2A1097G33 Lonicera japonica HOM05D006159 ORTHO05D007624 6.8e-68 261.2 189 69.3
Glyma.U039500 Glycine max HOM05D006159 ORTHO05D007624 8.8e-68 260.8 186 66.7
Aa31LG5G6390 Aethionema arabicum HOM05D006159 ORTHO05D007624 2.6e-67 259.2 177 70.1
MSTRG.17900 Avicennia marina HOM05D006159 ORTHO05D007624 3.4e-67 258.8 192 66.7
TPR.G27348 Trifolium pratense HOM05D006159 ORTHO05D007624 1.7e-66 256.5 186 65.6
Phvul.008G250200 Phaseolus vulgaris HOM05D006159 ORTHO05D007624 2.8e-66 255.8 178 67.4
Migut.N00748 Erythranthe guttata HOM05D006159 ORTHO05D007624 3.7e-66 255.4 172 72.1
Sp4g12880 Schrenkiella parvula HOM05D006159 ORTHO05D007624 3.7e-66 255.4 178 66.3
Psat0s1662g0080 Pisum sativum HOM05D006159 ORTHO05D007624 8.3e-66 254.2 178 66.9
LjContig00141g0000315 Lotus japonicus HOM05D006159 ORTHO05D007624 1.1e-65 253.8 178 69.7
LjContig00141g0002443 Lotus japonicus HOM05D006159 ORTHO05D007624 1.1e-65 253.8 175 68.6
VMungo0647G1827 Vigna mungo HOM05D006159 ORTHO05D007624 1.8e-65 253.1 186 65.1
C03p19940 Brassica napus HOM05D006159 ORTHO05D007624 2.4e-65 252.7 178 68.0
BolC3t14372H Brassica oleracea HOM05D006159 ORTHO05D007624 2.4e-65 252.7 178 68.0
Ah.15g096550 Amaranthus hybridus HOM05D006159 ORTHO05D007624 3.1e-65 252.3 172 69.8
MELO3C020498.2 Cucumis melo HOM05D006159 ORTHO05D007624 7.0e-65 251.1 172 68.0
Lsat_1_v5_gn_9_14440 Lactuca sativa HOM05D006159 ORTHO05D007624 7.0e-65 251.1 188 67.0
Sopen09g019910 Solanum pennellii HOM05D006159 ORTHO05D007624 7.0e-65 251.1 200 61.5
Thhalv10016529m.g Eutrema salsugineum HOM05D006159 ORTHO05D007624 9.1e-65 250.8 171 67.8
AUR62036228 Chenopodium quinoa HOM05D006159 ORTHO05D007624 1.6e-64 250.0 178 67.4
AUR62009718 Chenopodium quinoa HOM05D006159 ORTHO05D007624 2.7e-64 249.2 178 67.4
ECA247G0586 Erigeron canadensis HOM05D006159 ORTHO05D007624 4.5e-64 248.4 172 70.3
SalBow2G3538 Salvia bowleyana HOM05D006159 ORTHO05D007624 5.9e-64 248.1 189 67.2
Cc01_g15060 Coffea canephora HOM05D006159 ORTHO05D007624 7.7e-64 247.7 179 68.7
Medtr5g074620 Medicago truncatula HOM05D006159 ORTHO05D007624 2.3e-63 246.1 186 62.9
A03p16930 Brassica napus HOM05D006159 ORTHO05D007624 2.9e-63 245.7 178 66.9
AL4G25180 Arabidopsis lyrata HOM05D006159 ORTHO05D007624 3.8e-63 245.4 178 65.7
CARHR123640 Cardamine hirsuta HOM05D006159 ORTHO05D007624 3.8e-63 245.4 178 66.9
Nitab4.5_0005248g0030 Nicotiana tabacum HOM05D006159 ORTHO05D007624 3.8e-63 245.4 195 61.5
AT2G30320 Arabidopsis thaliana HOM05D006159 ORTHO05D007624 8.6e-63 244.2 178 65.7
EL10Ac7g15868 Beta vulgaris HOM05D006159 ORTHO05D007624 1.1e-62 243.8 175 67.4
CsaV3_1G036700 Cucumis sativus L. HOM05D006159 ORTHO05D007624 1.9e-62 243.0 182 65.4
Nitab4.5_0001438g0090 Nicotiana tabacum HOM05D006159 ORTHO05D007624 2.5e-62 242.7 190 61.6
PGR031G1374 Punica granatum HOM05D006159 ORTHO05D007624 4.2e-62 241.9 201 60.2
PSO170G6759 Papaver somniferum HOM05D006159 ORTHO05D007624 5.5e-62 241.5 172 65.7
PSO017G5079 Papaver somniferum HOM05D006159 ORTHO05D007624 7.2e-62 241.1 172 66.3
Peaxi162Scf00095g10135 Petunia axillaris HOM05D006159 ORTHO05D007624 1.2e-61 240.4 212 57.5
Carub.0004s1147 Capsella rubella HOM05D006159 ORTHO05D007624 1.8e-60 236.5 188 60.1
ClCG03G000200 Citrullus lanatus HOM05D006159 ORTHO05D007624 1.8e-60 236.5 188 62.2
Ca_27536_v3 Cicer arietinum L. HOM05D006159 ORTHO05D007624 2.3e-60 236.1 221 55.2
arahy.Tifrunner.gnm1.ann1.C311ZQ Arachis hypogaea HOM05D006159 ORTHO05D007624 3.0e-60 235.7 180 65.0
Sed0023817 Sechium edule HOM05D006159 ORTHO05D007624 3.0e-60 235.7 172 64.5
HanXRQChr08g0228561 Helianthus annuus HOM05D006159 ORTHO05D007624 8.9e-60 234.2 172 68.0
ECA247G2911 Erigeron canadensis HOM05D006159 ORTHO05D007624 1.2e-59 233.8 178 66.3
Gohir.D03G144100 Gossypium hirsutum HOM05D006159 ORTHO05D007624 4.4e-59 231.9 151 77.5
HPP92_011991 Vanilla planifolia HOM05D006159 ORTHO05D007624 9.8e-59 230.7 175 65.7
TPR.G27345 Trifolium pratense HOM05D006159 ORTHO05D007624 1.7e-58 229.9 178 63.5
Actinidia34484 Actinidia chinensis HOM05D006159 ORTHO05D007624 9.2e-57 224.2 148 75.7
Zm00001eb016190 Zea mays HOM05D006159 ORTHO05D007624 9.2e-57 224.2 192 58.9
Os03g0338600 Oryza sativa ssp. japonica HOM05D006159 ORTHO05D007624 7.8e-56 221.1 188 59.6
BcaC01g05985 Brassica carinata HOM05D006159 ORTHO05D007624 2.3e-52 209.5 178 59.0
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 1.7e-50 203.4 144 70.8
ATR1127G103 Amborella trichopoda HOM05D006159 ORTHO05D007624 6.2e-45 184.9 154 57.8
Nn2g11083 Nelumbo nucifera HOM05D006159 ORTHO05D007624 4.0e-44 182.2 140 64.3
SEGI_02969 Sequoiadendron giganteum HOM05D006159 ORTHO05D007624 3.2e-41 172.6 179 52.0
PGSC0003DMG400018825 Solanum tuberosum HOM05D006159 ORTHO05D007624 3.9e-39 165.6 117 69.2
Sopen02g007480 Solanum pennellii HOM05D006159 ORTHO05D007624 1.4e-33 147.1 135 57.8
AagrBONN_evm.TU.Sc2ySwM_117.4076 Anthoceros agrestis HOM05D006159 ORTHO05D007624 1.1e-30 137.5 180 42.8
Mapoly0146s0022 Marchantia polymorpha HOM05D006159 ORTHO05D007624 1.9e-30 136.7 192 42.7
Pp3c2_21310 Physcomitrium patens HOM05D006159 ORTHO05D007624 2.1e-29 133.3 208 37.0
SMO367G0138 Selaginella moellendorffii HOM05D006159 ORTHO05D007624 1.7e-26 123.6 173 38.7
SMO134G0068 Selaginella moellendorffii HOM05D006159 ORTHO05D007624 4.6e-24 115.5 183 38.8
CARHR034090 Cardamine hirsuta HOM05D006159 ORTHO05D007624 9.6e-22 107.8 90 61.1
CBR_g51420 Chara braunii HOM05D006159 ORTHO05D007624 1.2e-19 100.9 206 32.5
DCAR_012721 Daucus carota HOM05D006159 ORTHO05D007624 5.4e-17 92.0 52 75.0
Sc12g0000200 Simmondsia chinensis HOM05D006159 ORTHO05D007624 4.6e-16 89.0 59 62.7
Cre16.g691900 Chlamydomonas reinhardtii HOM05D006159 ORTHO05D007624 9.9e-11 71.2 106 40.6
Cre03.g152950 Chlamydomonas reinhardtii HOM05D006159 ORTHO05D007624 2.4e-09 66.6 175 29.7
MCO08G183 Micromonas commoda HOM05D006159 ORTHO05D007624 6.7e-07 58.5 118 33.9
Mapoly0057s0025 Marchantia polymorpha HOM05D004376 ORTHO05D005304 8.7e-07 58.2 125 31.2
BcaB07g32040 Brassica carinata HOM05D004376 ORTHO05D005304 1.9e-06 57.0 96 38.5
Pp3c5_14220 Physcomitrium patens HOM05D004376 ORTHO05D005304 1.9e-06 57.0 76 40.8
A06p16450 Brassica napus HOM05D004376 ORTHO05D005304 5.6e-06 55.5 96 37.5
BraA06t24749Z Brassica rapa HOM05D004376 ORTHO05D005304 5.6e-06 55.5 96 37.5
CARHR020830 Cardamine hirsuta HOM05D004376 ORTHO05D005304 5.6e-06 55.5 61 47.5
BcaC05g25947 Brassica carinata HOM05D004376 ORTHO05D005304 7.4e-06 55.1 136 31.6
C05p18990 Brassica napus HOM05D004376 ORTHO05D005304 7.4e-06 55.1 136 31.6
BolC5t30599H Brassica oleracea HOM05D004376 ORTHO05D005304 7.4e-06 55.1 136 31.6
Lsat_1_v5_gn_2_5561 Lactuca sativa HOM05D004376 ORTHO05D005304 7.4e-06 55.1 88 37.5
GSVIVG01008716001 Vitis vinifera HOM05D004376 ORTHO05D005304 7.4e-06 55.1 61 47.5
Thhalv10007295m.g Eutrema salsugineum HOM05D004376 ORTHO05D005304 9.6e-06 54.7 61 45.9
Sp1g18110 Schrenkiella parvula HOM05D004376 ORTHO05D005304 9.6e-06 54.7 61 45.9


User provided reference genes

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