Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1827.8 889 100.0
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1570.4 885 88.2
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1567.7 885 87.9
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1530.4 888 85.7
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1358.6 890 75.6
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1357.4 890 75.4
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1345.1 890 74.9
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1342.8 890 75.2
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1342.4 890 74.5
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1339.7 892 74.4
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1338.6 891 74.2
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1338.6 885 74.8
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1336.6 889 74.1
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1332.0 893 74.0
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1329.3 895 73.7
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1326.2 890 74.5
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1326.2 887 73.5
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1324.7 895 73.7
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1323.5 887 73.6
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1321.2 893 73.7
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1321.2 883 73.8
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1316.6 888 73.6
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1313.5 888 73.5
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1312.7 888 73.3
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1312.0 884 73.4
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1311.6 883 73.3
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1308.1 896 71.9
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1308.1 885 73.1
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1307.0 888 72.7
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1306.2 892 71.1
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1305.8 886 72.8
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1305.4 895 72.5
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1303.9 886 72.6
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1303.1 890 73.1
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1302.3 885 73.1
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1301.2 892 71.2
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1300.0 886 72.6
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1300.0 888 72.5
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1299.3 883 72.4
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1297.7 884 72.2
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1296.6 896 72.8
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1295.4 889 72.2
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1293.5 894 72.0
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1289.2 887 71.6
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1286.6 891 71.0
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1278.8 888 71.4
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 889 70.4
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1272.7 889 70.1
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1265.8 891 71.0
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1259.2 888 70.2
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1256.1 900 69.1
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1255.4 911 70.1
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1255.4 886 70.4
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1252.3 888 70.2
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1239.2 875 69.5
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1239.2 886 69.9
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1235.3 882 68.8
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1235.3 893 68.8
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1231.1 885 68.5
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1229.9 888 69.0
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1229.5 884 68.7
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1229.5 883 69.0
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1228.8 883 68.9
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1228.8 883 68.9
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1227.6 882 68.6
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1226.8 886 68.2
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1225.7 883 68.2
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1225.7 882 68.5
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1225.3 884 68.8
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1224.2 883 68.6
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1223.0 883 68.2
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1222.6 887 68.8
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1221.1 884 68.2
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1221.1 884 67.5
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1220.7 883 68.3
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1219.9 882 68.0
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1216.8 886 68.5
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1213.0 882 67.7
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1212.2 900 66.8
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1211.8 886 68.3
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1211.1 884 68.2
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1210.3 864 69.7
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1208.0 892 66.9
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1204.9 886 67.5
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1203.0 941 64.2
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1195.6 919 66.3
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1195.3 892 66.7
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1192.9 891 67.3
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1192.9 893 66.3
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1192.9 880 67.3
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1187.9 886 66.3
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1182.5 885 68.2
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1181.0 945 63.0
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1179.1 891 66.3
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1162.5 887 66.5
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1161.7 905 65.2
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1161.4 937 61.6
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1159.8 887 64.7
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1152.9 887 64.1
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1147.5 888 65.9
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1147.1 884 64.6
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1146.7 891 64.3
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1137.1 889 63.3
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1132.9 1046 58.7
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1131.7 841 67.2
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1128.6 861 65.6
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1114.4 1042 58.0
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1094.7 886 62.6
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1078.2 892 60.4
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 1.6e-310 1069.3 865 65.1
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.2e-305 1053.1 897 59.0
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.3e-301 1038.9 887 61.1
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 4.5e-281 971.5 684 70.5
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 4.3e-276 954.9 880 55.7
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 3.3e-268 928.7 884 54.9
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.2e-235 819.7 863 53.2
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 6.4e-195 685.3 377 85.7
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 1.7e-179 634.0 936 40.7
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 1.8e-168 597.4 907 39.6
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.7e-150 536.6 887 39.1
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 8.0e-145 518.8 1016 33.6
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 4.7e-137 493.0 926 35.5
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 1.0e-120 438.7 316 66.5
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 8.9e-112 409.1 248 76.2
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 9.8e-111 405.6 449 49.9
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 8.3e-102 375.9 322 62.4
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 1.6e-84 318.5 240 67.9
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 1.3e-75 288.9 756 32.1
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 1.5e-74 285.4 201 71.1
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.4e-64 252.3 175 72.0
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 6.5e-46 190.3 141 70.9
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 8.8e-43 179.9 194 55.2
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 4.1e-40 171.0 105 75.2
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 1.0e-38 166.4 90 82.2
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 4.2e-37 161.0 105 68.6
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 2.0e-31 142.1 181 47.0
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 2.9e-30 138.3 347 34.6
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 9.4e-29 133.3 98 68.4
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 2.3e-27 128.6 123 59.3
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.2e-27 127.5 80 77.5
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.5e-26 125.9 190 41.1
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 5.7e-26 124.0 118 55.9
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 3.7e-25 121.3 114 50.0
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 3.1e-24 118.2 183 40.4
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 1.6e-23 115.9 179 39.7
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 9.4e-21 106.7 109 53.2
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.2e-20 106.3 262 28.6
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 2.1e-20 105.5 69 73.9
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 1.3e-17 96.3 59 79.7
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 2.2e-17 95.5 68 69.1
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.4e-16 92.8 50 78.0
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 3.1e-16 91.7 144 43.1
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 3.1e-16 91.7 75 57.3
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 7.0e-16 90.5 43 90.7
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 3.2e-13 81.6 57 70.2
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 1.5e-10 72.8 61 50.8
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 7.5e-10 70.5 129 36.4
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 4.1e-08 64.7 57 61.4
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 7.0e-08 63.9 57 61.4
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 7.0e-08 63.9 57 61.4
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 9.2e-08 63.5 34 85.3
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 1.2e-07 63.2 70 55.7
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 2.7e-07 62.0 57 57.9
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 3.5e-07 61.6 54 63.0
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 1.0e-06 60.1 54 61.1
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 1.0e-06 60.1 54 61.1
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 1.0e-06 60.1 54 61.1
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 1.0e-06 60.1 54 61.1


User provided reference genes

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