Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 0.0e+00 1402.1 728 100.0
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 0.0e+00 1218.0 683 93.6
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 0.0e+00 1212.6 707 91.2
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 1.7e-302 1042.3 720 77.4
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 3.7e-297 1024.6 732 76.6
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 6.2e-297 1023.8 728 76.1
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 1.7e-294 1015.8 722 74.9
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 2.9e-294 1015.0 703 80.8
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 5.5e-293 1010.7 721 77.1
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 5.5e-293 1010.7 721 76.3
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 3.9e-291 1004.6 773 71.4
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 5.1e-291 1004.2 698 77.9
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 8.7e-291 1003.4 717 75.2
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 2.5e-290 1001.9 718 74.8
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 2.1e-289 998.8 723 76.1
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 2.8e-289 998.4 731 73.1
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 1.2e-287 993.0 718 75.5
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 3.4e-287 991.5 721 74.3
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 2.2e-286 988.8 712 75.1
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 5.0e-286 987.6 702 75.6
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 5.0e-286 987.6 714 74.9
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 8.4e-286 986.9 714 74.8
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 8.4e-286 986.9 691 78.6
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 1.9e-285 985.7 715 74.1
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 5.5e-285 984.2 643 81.0
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 7.2e-285 983.8 725 74.9
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 4.6e-284 981.1 716 74.6
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 7.9e-284 980.3 675 78.1
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 3.0e-283 978.4 738 74.4
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 3.0e-283 978.4 706 75.5
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 5.1e-283 977.6 727 73.7
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 2.2e-281 972.2 708 75.6
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 3.7e-281 971.5 736 72.8
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 3.7e-281 971.5 726 72.5
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 2.0e-279 965.7 723 73.4
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 2.6e-279 965.3 714 73.4
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 4.5e-279 964.5 703 75.2
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 2.2e-278 962.2 710 73.9
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 7.9e-276 953.7 720 72.5
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.0e-275 953.4 718 72.6
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 1.0e-275 953.4 714 73.1
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 1.4e-275 953.0 688 73.5
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 5.1e-275 951.0 686 72.6
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 1.5e-274 949.5 808 67.6
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.2e-273 945.7 718 72.0
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 4.8e-273 944.5 644 77.0
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 8.2e-273 943.7 717 72.2
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.1e-272 943.3 684 75.1
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 1.8e-272 942.6 696 72.8
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 4.1e-272 941.4 643 77.3
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 2.6e-271 938.7 766 67.8
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 2.6e-271 938.7 607 80.4
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 3.4e-271 938.3 713 71.8
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 1.7e-270 936.0 710 73.2
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 2.2e-270 935.6 640 77.3
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 2.9e-270 935.3 707 72.1
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.5e-270 934.1 716 71.1
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 1.4e-269 932.9 716 71.1
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 1.4e-269 932.9 754 68.8
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.4e-267 926.4 647 74.7
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 3.9e-267 924.9 637 76.8
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 2.6e-266 922.2 714 70.3
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 2.6e-266 922.2 705 71.2
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 3.3e-266 921.8 646 75.9
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.7e-265 919.5 720 70.3
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 3.7e-265 918.3 716 71.5
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 6.3e-265 917.5 642 76.0
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 1.4e-264 916.4 646 75.7
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 2.4e-264 915.6 684 75.0
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 5.3e-264 914.4 729 69.7
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 9.1e-264 913.7 695 69.8
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 4.5e-263 911.4 642 75.2
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.0e-262 910.2 703 71.4
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 1.3e-262 909.8 640 75.5
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 1.6e-260 902.9 728 69.1
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.4e-259 899.8 476 90.5
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 1.8e-259 899.4 656 72.7
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 2.3e-259 899.0 568 80.3
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 3.0e-259 898.7 704 68.3
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 2.0e-258 896.0 693 71.7
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 9.7e-258 893.6 489 88.3
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 2.2e-257 892.5 715 67.8
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 3.7e-257 891.7 671 73.3
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 1.1e-253 880.2 710 67.2
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 1.8e-251 872.8 683 72.2
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 2.6e-250 869.0 727 68.2
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 1.4e-248 863.2 466 88.8
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 5.4e-248 861.3 700 66.6
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.6e-247 859.8 764 62.2
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 4.7e-244 848.2 623 75.4
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 8.0e-244 847.4 679 68.9
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 1.4e-243 846.7 706 65.3
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 4.4e-234 815.1 731 64.4
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 5.2e-219 765.0 696 63.5
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.2e-218 763.8 644 63.8
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 5.8e-218 761.5 712 58.6
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.1e-215 753.1 613 68.7
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 1.8e-211 740.0 478 73.6
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 6.4e-209 731.5 693 60.2
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 2.7e-199 699.5 485 69.5
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.3e-198 697.2 406 82.5
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 3.7e-188 662.5 344 90.4
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.7e-183 646.4 667 59.8
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.1e-179 634.4 539 58.1
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 5.3e-171 605.5 508 59.1
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 4.5e-170 602.4 486 60.1
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 7.6e-170 601.7 361 80.6
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 9.7e-149 531.6 540 61.3
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.6e-138 497.7 543 59.3
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 1.4e-131 474.6 503 49.3
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 4.0e-126 456.4 461 57.5
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.4e-123 448.0 532 46.4
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 2.8e-119 433.7 252 79.0
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 1.1e-110 405.2 527 44.2
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 8.9e-102 375.6 486 41.4
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 8.3e-100 369.0 214 83.6
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 9.2e-91 339.0 179 89.9
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 9.6e-88 328.9 377 57.8
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 4.4e-85 320.1 270 63.7
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.1e-70 272.3 157 79.6
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.6e-66 258.5 329 57.4
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 9.3e-59 232.6 163 69.9
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 8.5e-44 183.0 295 47.1
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 4.7e-42 177.2 97 85.6
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 7.0e-38 163.3 261 50.6
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.0e-37 161.8 225 54.7
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 6.7e-25 120.2 278 42.4
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.0e-24 118.6 76 80.3
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.1e-22 112.8 70 81.4
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 4.8e-15 87.4 216 47.7
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 5.5e-11 73.9 141 43.3
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 8.0e-10 70.1 141 41.8
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.8e-09 68.9 321 30.5
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 2.8e-07 61.6 110 41.8
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.4e-06 58.5 183 44.8


User provided reference genes

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