Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G010680 Citrullus lanatus HOM05D003800 ORTHO05D004549 1.4e-162 576.2 287 100.0
CsaV3_2G009720 Cucumis sativus L. HOM05D003800 ORTHO05D004549 1.0e-154 550.1 287 94.4
MELO3C008717.2 Cucumis melo HOM05D003800 ORTHO05D004549 1.4e-154 549.7 287 94.8
Sed0012073 Sechium edule HOM05D003800 ORTHO05D004549 5.7e-137 491.1 287 86.8
VMungo1383G1495 Vigna mungo HOM05D003800 ORTHO05D004549 8.3e-120 434.1 301 74.4
Nn7g38203 Nelumbo nucifera HOM05D003800 ORTHO05D004549 1.4e-119 433.3 258 80.6
Lj1g0015068 Lotus japonicus HOM05D003800 ORTHO05D004549 1.9e-119 433.0 296 74.7
Potri.019G053700 Populus trichocarpa HOM05D003800 ORTHO05D004549 2.4e-119 432.6 277 76.9
Glyma.18G242300 Glycine max HOM05D003800 ORTHO05D004549 7.0e-119 431.0 296 75.0
Migut.F01872 Erythranthe guttata HOM05D003800 ORTHO05D004549 9.2e-119 430.6 285 74.4
TPR.G31802 Trifolium pratense HOM05D003800 ORTHO05D004549 9.2e-119 430.6 268 79.1
Ciclev10012312m.g Citrus clementina HOM05D003800 ORTHO05D004549 1.2e-118 430.3 286 76.6
Phvul.008G054025 Phaseolus vulgaris HOM05D003800 ORTHO05D004549 1.6e-118 429.9 296 73.6
PGR119G0297 Punica granatum HOM05D003800 ORTHO05D004549 2.7e-118 429.1 287 75.6
QL08p020626 Quercus lobata HOM05D003800 ORTHO05D004549 2.7e-118 429.1 262 78.6
CSS0026150 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 7.8e-118 427.6 299 73.6
Peaxi162Scf00048g00815 Petunia axillaris HOM05D003800 ORTHO05D004549 1.0e-117 427.2 262 77.9
ClCG03G010650 Citrullus lanatus HOM05D003800 ORTHO05D004549 1.3e-117 426.8 236 84.7
Psat3g138120 Pisum sativum HOM05D003800 ORTHO05D004549 3.9e-117 425.2 293 73.4
Sc09g0001450 Simmondsia chinensis HOM05D003800 ORTHO05D004549 3.9e-117 425.2 286 73.4
Cfa006258 Carpinus fangiana HOM05D003800 ORTHO05D004549 5.1e-117 424.9 301 71.8
PGSC0003DMG400007268 Solanum tuberosum HOM05D003800 ORTHO05D004549 5.1e-117 424.9 273 75.8
Nitab4.5_0000971g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 8.6e-117 424.1 230 86.1
Nitab4.5_0001435g0050 Nicotiana tabacum HOM05D003800 ORTHO05D004549 8.6e-117 424.1 245 82.0
Dinv10508 Davidia involucrata HOM05D003800 ORTHO05D004549 1.1e-116 423.7 278 74.8
Nitab4.5_0003099g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 1.1e-116 423.7 277 76.2
Cpa.g.sc1105.3 Carica papaya HOM05D003800 ORTHO05D004549 1.5e-116 423.3 235 83.8
MELO3C010053.2 Cucumis melo HOM05D003800 ORTHO05D004549 1.5e-116 423.3 236 83.9
MD04G1245100 Malus domestica HOM05D003800 ORTHO05D004549 1.5e-116 423.3 291 73.2
Sopen04g025300 Solanum pennellii HOM05D003800 ORTHO05D004549 2.5e-116 422.5 277 74.4
CiPaw.08G114800 Carya illinoinensis HOM05D003800 ORTHO05D004549 3.3e-116 422.2 284 74.6
CsaV3_1G044500 Cucumis sativus L. HOM05D003800 ORTHO05D004549 3.3e-116 422.2 236 84.3
Lalb_Chr01g0020421 Lupinus albus HOM05D003800 ORTHO05D004549 4.3e-116 421.8 283 74.6
Oeu023172.1 Olea europaea HOM05D003800 ORTHO05D004549 4.3e-116 421.8 233 83.7
Solyc05g055760.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 4.3e-116 421.8 230 85.7
Sopen05g034170 Solanum pennellii HOM05D003800 ORTHO05D004549 4.3e-116 421.8 230 85.7
Atru.chr12.1779 Acer truncatum HOM05D003800 ORTHO05D004549 5.6e-116 421.4 273 75.1
CAN.G694.23 Capsicum annuum HOM05D003800 ORTHO05D004549 7.3e-116 421.0 230 85.7
CiPaw.07G080800 Carya illinoinensis HOM05D003800 ORTHO05D004549 7.3e-116 421.0 235 82.6
Prupe.6G361700 Prunus persica HOM05D003800 ORTHO05D004549 7.3e-116 421.0 277 75.1
Glyma.09G250200 Glycine max HOM05D003800 ORTHO05D004549 9.5e-116 420.6 283 74.2
vmacro10405 Vaccinium macrocarpon HOM05D003800 ORTHO05D004549 9.5e-116 420.6 251 78.9
Solyc04g056390.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 1.2e-115 420.2 277 73.6
Thecc.05G194400 Theobroma cacao HOM05D003800 ORTHO05D004549 1.2e-115 420.2 301 71.8
TWI75G1224 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 1.2e-115 420.2 292 72.6
Eucgr.A01783 Eucalyptus grandis HOM05D003800 ORTHO05D004549 1.6e-115 419.9 235 83.8
PGR031G1622 Punica granatum HOM05D003800 ORTHO05D004549 1.6e-115 419.9 275 75.6
RcHm_v2.0_Chr3g0447851 Rosa chinensis HOM05D003800 ORTHO05D004549 1.6e-115 419.9 289 74.0
Rhsim09G0130100 Rhododendron simsii HOM05D003800 ORTHO05D004549 2.1e-115 419.5 268 75.7
TAR365G0109 Trochodendron aralioides HOM05D003800 ORTHO05D004549 2.1e-115 419.5 271 75.3
Cc09_g03670 Coffea canephora HOM05D003800 ORTHO05D004549 2.8e-115 419.1 236 83.1
DCAR_015080 Daucus carota HOM05D003800 ORTHO05D004549 3.6e-115 418.7 235 82.6
MD12G1086800 Malus domestica HOM05D003800 ORTHO05D004549 4.7e-115 418.3 289 73.4
PGSC0003DMG400023359 Solanum tuberosum HOM05D003800 ORTHO05D004549 4.7e-115 418.3 228 85.1
CAN.G694.24 Capsicum annuum HOM05D003800 ORTHO05D004549 8.1e-115 417.5 230 85.2
Lalb_Chr06g0168491 Lupinus albus HOM05D003800 ORTHO05D004549 8.1e-115 417.5 233 82.4
Medtr7g080060 Medicago truncatula HOM05D003800 ORTHO05D004549 8.1e-115 417.5 294 72.4
AL3G12190 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 1.1e-114 417.2 287 72.5
Lsat_1_v5_gn_2_17540 Lactuca sativa HOM05D003800 ORTHO05D004549 1.1e-114 417.2 270 73.7
CAN.G217.10 Capsicum annuum HOM05D003800 ORTHO05D004549 1.4e-114 416.8 282 72.7
Manes.12G005500 Manihot esculenta HOM05D003800 ORTHO05D004549 1.4e-114 416.8 282 72.7
MSTRG.329 Avicennia marina HOM05D003800 ORTHO05D004549 1.8e-114 416.4 242 81.0
Dinv29095 Davidia involucrata HOM05D003800 ORTHO05D004549 1.8e-114 416.4 307 69.1
Eucgr.H01393 Eucalyptus grandis HOM05D003800 ORTHO05D004549 1.8e-114 416.4 293 71.0
AT3G02780 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 3.1e-114 415.6 269 74.3
Gohir.A08G225900 Gossypium hirsutum HOM05D003800 ORTHO05D004549 3.1e-114 415.6 298 71.8
Gorai.004G262800 Gossypium raimondii HOM05D003800 ORTHO05D004549 3.1e-114 415.6 298 71.5
HanXRQChr04g0095031 Helianthus annuus HOM05D003800 ORTHO05D004549 3.1e-114 415.6 243 80.7
Actinidia06803 Actinidia chinensis HOM05D003800 ORTHO05D004549 4.0e-114 415.2 300 71.3
Lj1A574T25 Lonicera japonica HOM05D003800 ORTHO05D004549 5.2e-114 414.8 230 82.6
PSO357G0181 Papaver somniferum HOM05D003800 ORTHO05D004549 5.2e-114 414.8 233 82.4
TWI18G1194 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 6.8e-114 414.5 294 71.1
FAN05G4594 Fragaria x ananassa HOM05D003800 ORTHO05D004549 8.9e-114 414.1 235 81.7
SGA_v2.0_scaffold340G49303 Striga asiatica HOM05D003800 ORTHO05D004549 1.5e-113 413.3 287 71.4
GSVIVG01019089001 Vitis vinifera HOM05D003800 ORTHO05D004549 1.5e-113 413.3 227 84.6
BcaC05g30508 Brassica carinata HOM05D003800 ORTHO05D004549 2.0e-113 412.9 271 74.9
C03p40290 Brassica napus HOM05D003800 ORTHO05D004549 2.0e-113 412.9 235 80.4
BolC3t16294H Brassica oleracea HOM05D003800 ORTHO05D004549 2.0e-113 412.9 235 80.4
CSS0014154 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 2.0e-113 412.9 228 83.3
AUR62000306 Chenopodium quinoa HOM05D003800 ORTHO05D004549 2.0e-113 412.9 228 82.9
Sp3g01810 Schrenkiella parvula HOM05D003800 ORTHO05D004549 2.0e-113 412.9 238 80.3
A03p33110 Brassica napus HOM05D003800 ORTHO05D004549 2.6e-113 412.5 236 81.8
Carub.0003s0188 Capsella rubella HOM05D003800 ORTHO05D004549 2.6e-113 412.5 275 73.1
Aqoxy2G04026 Aquilegia oxysepala HOM05D003800 ORTHO05D004549 3.4e-113 412.1 247 77.3
MSTRG.8210 Avicennia marina HOM05D003800 ORTHO05D004549 3.4e-113 412.1 266 74.4
BraA03t12481Z Brassica rapa HOM05D003800 ORTHO05D004549 3.4e-113 412.1 249 77.9
Os07g0546000 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 3.4e-113 412.1 234 81.6
CARHR076790 Cardamine hirsuta HOM05D003800 ORTHO05D004549 5.8e-113 411.4 235 80.4
AUR62006651 Chenopodium quinoa HOM05D003800 ORTHO05D004549 5.8e-113 411.4 228 82.5
THA.LOC104802955 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 5.8e-113 411.4 286 71.7
THA.LOC104820922 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 5.8e-113 411.4 254 77.6
Migut.F02135 Erythranthe guttata HOM05D003800 ORTHO05D004549 7.5e-113 411.0 230 82.2
Gohir.D08G246300 Gossypium hirsutum HOM05D003800 ORTHO05D004549 7.5e-113 411.0 298 70.8
Duzib128G1178 Durio zibethinus HOM05D003800 ORTHO05D004549 9.9e-113 410.6 280 72.5
MBI07_g36332_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 9.9e-113 410.6 277 72.6
PSO675G7217 Papaver somniferum HOM05D003800 ORTHO05D004549 9.9e-113 410.6 286 71.7
Actinidia38903 Actinidia chinensis HOM05D003800 ORTHO05D004549 1.3e-112 410.2 236 80.9
Peaxi162Scf00156g00114 Petunia axillaris HOM05D003800 ORTHO05D004549 1.3e-112 410.2 250 78.4
Ah.06g195450 Amaranthus hybridus HOM05D003800 ORTHO05D004549 1.7e-112 409.8 240 77.9
Actinidia03293 Actinidia chinensis HOM05D003800 ORTHO05D004549 2.9e-112 409.1 299 69.9
PSO017G2843 Papaver somniferum HOM05D003800 ORTHO05D004549 2.9e-112 409.1 286 71.3
A05p44340 Brassica napus HOM05D003800 ORTHO05D004549 4.9e-112 408.3 289 72.7
BraA06t23290Z Brassica rapa HOM05D003800 ORTHO05D004549 4.9e-112 408.3 289 72.7
FvH4_6g00470 Fragaria vesca HOM05D003800 ORTHO05D004549 4.9e-112 408.3 295 70.5
HanXRQChr09g0257801 Helianthus annuus HOM05D003800 ORTHO05D004549 4.9e-112 408.3 292 68.8
FAN09G3800 Fragaria x ananassa HOM05D003800 ORTHO05D004549 6.4e-112 407.9 295 70.5
Sabra19G0062900 Salix brachista HOM05D003800 ORTHO05D004549 6.4e-112 407.9 350 63.1
BcaC05g30511 Brassica carinata HOM05D003800 ORTHO05D004549 8.3e-112 407.5 267 74.2
C09p75900 Brassica napus HOM05D003800 ORTHO05D004549 1.1e-111 407.1 263 75.3
BolC5t35067H Brassica oleracea HOM05D003800 ORTHO05D004549 1.1e-111 407.1 263 75.3
AT5G16440 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 1.4e-111 406.8 277 71.5
Thhalv10020933m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 1.4e-111 406.8 291 69.4
Zm00001eb323510 Zea mays HOM05D003800 ORTHO05D004549 1.4e-111 406.8 228 81.1
MSTRG.27390 Avicennia marina HOM05D003800 ORTHO05D004549 3.2e-111 405.6 301 67.1
Duzib177G0232 Durio zibethinus HOM05D003800 ORTHO05D004549 3.2e-111 405.6 296 70.6
Thhalv10014571m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 4.1e-111 405.2 228 81.6
Manes.13G005300 Manihot esculenta HOM05D003800 ORTHO05D004549 7.1e-111 404.4 290 70.3
EL10Ac4g09961 Beta vulgaris HOM05D003800 ORTHO05D004549 9.2e-111 404.1 281 71.2
Ah.04g158990 Amaranthus hybridus HOM05D003800 ORTHO05D004549 2.1e-110 402.9 289 70.6
arahy.Tifrunner.gnm1.ann1.BW88YF Arachis hypogaea HOM05D003800 ORTHO05D004549 2.1e-110 402.9 264 74.6
ATR1145G078 Amborella trichopoda HOM05D003800 ORTHO05D004549 3.5e-110 402.1 285 69.5
BcaB04g21400 Brassica carinata HOM05D003800 ORTHO05D004549 4.6e-110 401.7 274 71.2
Carub.0006s1463 Capsella rubella HOM05D003800 ORTHO05D004549 4.6e-110 401.7 263 73.4
BolC3t13395H Brassica oleracea HOM05D003800 ORTHO05D004549 3.9e-109 398.7 242 76.9
Os05g0413400 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 3.9e-109 398.7 290 66.2
AL6G27370 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 5.1e-109 398.3 275 72.4
BNapus_Darmor_BZH_scaffold_99p00290 Brassica napus HOM05D003800 ORTHO05D004549 6.6e-109 397.9 285 69.5
CARHR196820 Cardamine hirsuta HOM05D003800 ORTHO05D004549 6.6e-109 397.9 228 79.4
Lsat_1_v5_gn_8_2340 Lactuca sativa HOM05D003800 ORTHO05D004549 6.6e-109 397.9 286 68.9
BcaNung04309 Brassica carinata HOM05D003800 ORTHO05D004549 1.5e-108 396.7 275 72.0
BolC1t05871H Brassica oleracea HOM05D003800 ORTHO05D004549 1.5e-108 396.7 275 72.0
Zm00001eb349410 Zea mays HOM05D003800 ORTHO05D004549 1.9e-108 396.4 251 73.3
C03p08990 Brassica napus HOM05D003800 ORTHO05D004549 2.5e-108 396.0 242 76.4
TAR636G3604 Trochodendron aralioides HOM05D003800 ORTHO05D004549 2.5e-108 396.0 250 75.6
SGA_v2.0_scaffold62G21505 Striga asiatica HOM05D003800 ORTHO05D004549 9.5e-108 394.0 293 66.9
BraA03t10104Z Brassica rapa HOM05D003800 ORTHO05D004549 1.2e-107 393.7 230 79.6
CDE05G0693 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 1.6e-107 393.3 233 75.5
ECA232G0651 Erigeron canadensis HOM05D003800 ORTHO05D004549 2.8e-107 392.5 295 67.5
Aa31LG11G13220 Aethionema arabicum HOM05D003800 ORTHO05D004549 8.1e-107 391.0 233 76.0
Aa31LG5G13250 Aethionema arabicum HOM05D003800 ORTHO05D004549 8.1e-107 391.0 280 71.1
CDE02G3521 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 1.1e-106 390.6 273 70.3
SEGI_07465 Sequoiadendron giganteum HOM05D003800 ORTHO05D004549 1.8e-106 389.8 287 69.0
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.5e-105 386.7 283 67.1
PSO170G0032 Papaver somniferum HOM05D003800 ORTHO05D004549 2.0e-105 386.3 233 78.5
Pp3c1_33430 Physcomitrium patens HOM05D003800 ORTHO05D004549 1.7e-104 383.3 238 75.6
BraA01t04615Z Brassica rapa HOM05D003800 ORTHO05D004549 2.9e-104 382.5 285 67.7
FAN02G2831 Fragaria x ananassa HOM05D003800 ORTHO05D004549 4.9e-104 381.7 217 81.1
A03p07770 Brassica napus HOM05D003800 ORTHO05D004549 2.4e-103 379.4 230 77.8
Nitab4.5_0000083g0120 Nicotiana tabacum HOM05D003800 ORTHO05D004549 2.4e-103 379.4 302 65.9
SMO367G0306 Selaginella moellendorffii HOM05D003800 ORTHO05D004549 6.0e-102 374.8 227 77.1
Mapoly0066s0080 Marchantia polymorpha HOM05D003800 ORTHO05D004549 1.0e-101 374.0 225 77.3
unitig_61.g26276 Utricularia gibba HOM05D003800 ORTHO05D004549 1.0e-101 374.0 214 79.0
CDE05G3592 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 1.7e-101 373.2 221 76.9
AagrBONN_evm.TU.Sc2ySwM_344.2844 Anthoceros agrestis HOM05D003800 ORTHO05D004549 3.0e-101 372.5 232 75.4
ECA238G3407 Erigeron canadensis HOM05D003800 ORTHO05D004549 9.9e-97 357.5 196 85.7
arahy.Tifrunner.gnm1.ann1.7Y2C76 Arachis hypogaea HOM05D003800 ORTHO05D004549 2.2e-96 356.3 305 63.0
Oeu046895.1 Olea europaea HOM05D003800 ORTHO05D004549 4.2e-95 352.1 193 85.0
Haze_04560 Corylus avellana HOM05D003800 ORTHO05D004549 6.0e-94 348.2 199 80.9
CBR_g48525 Chara braunii HOM05D003800 ORTHO05D004549 1.1e-92 344.0 220 69.1
MBI11_g44548_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 1.9e-92 343.2 193 80.3
Ca_07990_v3 Cicer arietinum L. HOM05D003800 ORTHO05D004549 1.4e-90 337.0 232 69.8
BcaB04g19388 Brassica carinata HOM05D003800 ORTHO05D004549 6.9e-90 334.7 231 70.6
FAN14G0085 Fragaria x ananassa HOM05D003800 ORTHO05D004549 1.2e-89 334.0 203 78.3
Zm00001eb288110 Zea mays HOM05D003800 ORTHO05D004549 2.5e-84 316.2 191 76.4
Lju50C0T2 Lonicera japonica HOM05D003800 ORTHO05D004549 1.1e-79 300.8 175 80.6
Sed0006377 Sechium edule HOM05D003800 ORTHO05D004549 2.5e-68 263.1 145 84.1
Sp6g27750 Schrenkiella parvula HOM05D003800 ORTHO05D004549 2.5e-63 246.5 209 62.2
PRCOL_00001613 Prasinoderma coloniale HOM05D003800 ORTHO05D004549 1.8e-61 240.4 229 51.1
COL.COLO4_38023 Corchorus olitorius HOM05D003800 ORTHO05D004549 5.1e-61 238.8 131 83.2
CBR_g16018 Chara braunii HOM05D000019 ORTHO05D000353 3.2e-55 219.5 220 49.1
MCO12G260 Micromonas commoda HOM05D003800 ORTHO05D004549 5.1e-53 212.2 258 45.0
BNapus_Darmor_BZH_scaffold_122p00260 Brassica napus HOM05D003800 ORTHO05D004549 3.3e-44 183.0 98 80.6
Haze_26091 Corylus avellana HOM05D003800 ORTHO05D004549 8.2e-43 178.3 225 39.6
Cre11.g467544 Chlamydomonas reinhardtii HOM05D003800 ORTHO05D004549 7.7e-41 171.8 244 40.2
HanXRQChr09g0257811 Helianthus annuus HOM05D003800 ORTHO05D004549 8.3e-27 125.2 110 58.2
BNapus_Darmor_BZH_scaffold_122p00270 Brassica napus HOM05D003800 ORTHO05D004549 7.0e-26 122.1 132 56.1
TPR.G14062 Trifolium pratense HOM05D001872 ORTHO05D001859 1.3e-24 117.9 156 48.1
FvH4_6g42310 Fragaria vesca HOM05D003800 ORTHO05D045511 1.5e-20 104.4 74 70.3
FAN14G4609 Fragaria x ananassa HOM05D003800 ORTHO05D045511 1.5e-20 104.4 74 70.3
CDE09G0057 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 1.3e-19 101.3 71 67.6
Nitab4.5_0000195g0040 Nicotiana tabacum HOM05D003800 ORTHO05D004549 1.1e-18 98.2 119 44.5
Nitab4.5_0000740g0050 Nicotiana tabacum HOM05D003800 ORTHO05D011827 2.4e-18 97.1 84 57.1
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 2.3e-16 90.5 59 74.6
PGSC0003DMG400012082 Solanum tuberosum HOM05D003800 ORTHO05D004549 1.4e-10 71.2 80 53.8
Nitab4.5_0007043g0020 Nicotiana tabacum HOM05D013000 ORTHO05D011827 2.3e-08 63.9 67 50.7


User provided reference genes

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