Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1499.6 796 100.0
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1283.1 710 96.9
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1275.8 728 94.6
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1256.5 710 94.5
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 710 84.8
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 710 84.8
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1159.4 699 86.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 710 85.2
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1156.4 710 85.2
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 710 84.4
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 710 84.9
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 710 84.1
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 710 84.6
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1152.1 710 86.5
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1151.3 710 84.6
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 710 84.2
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 713 84.9
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1148.3 710 83.8
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 710 83.7
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 710 84.4
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1145.2 699 85.7
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1144.0 699 85.1
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1144.0 690 86.1
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 699 85.1
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 707 85.3
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1139.8 708 84.7
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1135.6 689 86.9
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 692 85.3
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 699 84.5
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 699 84.4
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 689 84.9
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 689 84.9
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 689 84.9
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 710 83.0
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1130.9 710 83.1
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1130.9 710 82.8
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 710 82.8
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1129.4 710 83.1
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1128.6 703 84.2
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1127.9 689 86.1
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1126.7 690 86.7
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 738 81.3
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 705 83.1
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 688 84.9
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 703 82.1
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 696 84.5
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1115.9 706 82.3
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1115.9 696 82.6
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1115.5 689 84.6
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1114.8 721 81.4
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1114.0 702 83.6
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1112.1 712 82.7
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1110.9 718 82.3
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1109.0 738 79.0
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1106.3 733 79.7
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1105.5 704 82.8
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1104.7 696 82.0
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1104.4 710 80.3
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1104.4 673 85.4
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1101.3 695 81.6
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1099.3 692 81.8
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 697 81.2
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1097.0 719 79.7
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1096.3 708 79.5
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1095.5 706 79.7
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1092.4 706 79.5
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1092.4 706 79.5
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1091.6 710 79.0
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1091.6 710 79.0
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1091.3 706 79.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1091.3 706 79.3
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1090.5 690 81.7
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1089.3 707 79.5
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1089.3 710 78.7
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1088.6 690 81.6
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1084.3 709 79.0
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1083.9 710 79.7
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1082.4 711 80.0
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1078.9 697 80.3
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1075.1 699 79.0
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 5.4e-312 1074.7 699 80.5
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.2e-311 1072.0 696 79.9
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 8.2e-311 1070.1 710 77.7
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 7.0e-310 1067.0 756 74.9
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.2e-309 1066.2 692 79.5
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 3.5e-309 1064.7 670 81.9
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 3.9e-308 1061.2 694 78.8
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 1.8e-305 1052.4 688 79.7
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 5.2e-305 1050.8 779 72.7
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 2.2e-303 1045.4 750 73.5
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.4e-302 1042.7 714 77.2
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 3.2e-302 1041.6 686 79.2
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 3.9e-300 1034.6 698 76.2
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 6.8e-297 1023.8 756 73.3
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 9.8e-296 1020.0 710 74.5
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 7.1e-294 1013.8 668 79.6
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 3.3e-291 1005.0 733 73.0
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 6.8e-289 997.3 689 74.7
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 5.8e-280 967.6 749 67.8
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.3e-275 951.8 633 79.6
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 3.6e-274 948.3 593 81.8
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 4.3e-267 924.9 618 77.7
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.2e-264 916.8 684 73.5
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 3.8e-263 911.8 697 66.9
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 4.9e-263 911.4 691 67.6
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 4.9e-263 911.4 691 67.6
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.3e-260 902.5 585 78.8
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 2.6e-256 889.0 694 66.0
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 9.3e-254 880.6 699 66.0
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.6e-253 879.8 591 78.3
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.8e-252 876.3 567 78.3
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.0e-248 862.8 555 80.0
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 8.5e-247 857.4 518 84.9
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 9.4e-238 827.4 676 67.0
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 9.1e-233 810.8 496 84.3
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.9e-215 752.7 685 56.6
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 5.4e-201 705.3 685 53.1
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.4e-195 686.0 424 81.4
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.0e-191 672.2 470 77.2
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.0e-151 541.6 327 79.5
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.6e-144 517.7 733 42.2
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 7.7e-131 472.2 761 36.4
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 5.7e-126 456.1 282 83.0
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 5.3e-124 449.5 273 83.9
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.6e-120 438.0 269 84.4
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.1e-110 405.2 359 58.5
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.2e-107 395.2 253 79.1
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 6.5e-106 389.4 746 34.9
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.2e-104 385.2 237 82.7
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.1e-104 384.4 239 83.3
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.5e-97 359.8 259 75.7
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.1e-96 357.8 249 77.5
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 8.6e-74 282.7 148 90.5
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.5e-73 282.0 190 74.7
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 7.3e-73 279.6 193 79.3
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 2.8e-72 277.7 219 67.6
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 4.6e-67 260.4 194 70.1
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 4.6e-59 233.8 155 65.2
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 6.6e-58 229.9 192 69.3
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 3.4e-54 217.6 155 71.6
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 9.2e-52 209.5 489 29.7
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.7e-51 208.0 166 69.3
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 7.6e-46 189.9 180 63.3
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.3e-45 189.1 237 49.4
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.3e-41 174.5 114 80.7
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 1.6e-40 172.2 102 86.3
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.1e-40 171.8 111 84.7
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.8e-40 170.6 122 73.8
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 5.4e-36 157.1 111 73.0
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 8.4e-29 133.3 100 69.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.9e-28 132.1 151 53.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.6e-27 129.0 100 67.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.6e-27 129.0 100 67.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 3.9e-26 124.4 73 87.7
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.4e-23 115.9 84 72.6
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.0e-23 114.4 82 72.0
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.2e-22 112.8 127 52.0
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.3e-21 109.4 69 75.4
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 3.2e-20 104.8 63 77.8
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.3e-20 103.2 57 86.0
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.8e-18 99.0 59 79.7
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 2.3e-18 98.6 77 64.9
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 8.2e-16 90.1 65 73.8
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.9e-15 87.0 76 60.5
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 7.2e-12 77.0 78 51.3
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.2e-11 76.3 61 67.2
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.5e-09 69.3 61 62.3
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 2.8e-08 65.1 40 82.5
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 5.9e-06 57.4 48 60.4


User provided reference genes

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