Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 2.8e-275 951.4 520 100.0
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 2.8e-267 924.9 522 97.5
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 2.4e-266 921.8 521 97.1
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 7.2e-247 857.1 524 91.8
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 1.2e-241 839.7 439 92.0
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 2.3e-224 782.3 522 80.5
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 1.1e-223 780.0 523 83.6
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 2.5e-223 778.9 437 84.0
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 1.6e-222 776.2 423 86.1
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 2.8e-222 775.4 436 83.9
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 2.8e-222 775.4 443 83.3
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 2.3e-221 772.3 427 84.5
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 6.8e-221 770.8 425 84.9
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 3.4e-220 768.5 429 85.3
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 4.4e-220 768.1 426 84.5
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 7.5e-220 767.3 436 83.3
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.3e-219 766.5 423 83.9
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 4.9e-219 764.6 431 84.0
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 8.3e-219 763.8 424 84.0
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 1.9e-218 762.7 454 80.8
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 9.2e-218 760.4 421 85.7
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 1.2e-217 760.0 520 82.1
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 2.7e-217 758.8 422 84.6
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 7.8e-217 757.3 436 83.3
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.0e-216 756.9 448 80.6
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.0e-216 756.9 423 83.0
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 2.3e-216 755.7 422 84.4
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 2.3e-216 755.7 423 82.7
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 3.0e-216 755.4 451 80.0
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 3.0e-216 755.4 451 80.0
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 3.0e-216 755.4 438 82.6
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 8.6e-216 753.8 433 83.4
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.8e-214 748.8 432 83.1
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 3.6e-214 748.4 432 82.9
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 3.6e-214 748.4 444 80.9
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 4.7e-214 748.0 477 76.5
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.1e-213 746.9 420 83.1
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 1.4e-213 746.5 419 83.1
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 1.8e-213 746.1 460 77.4
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 2.3e-213 745.7 425 82.6
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 5.2e-213 744.6 426 84.0
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 5.2e-213 744.6 419 82.6
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 6.8e-213 744.2 431 82.1
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 5.8e-212 741.1 421 82.9
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 7.5e-212 740.7 422 82.9
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 4.9e-211 738.0 426 81.7
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 3.2e-210 735.3 436 81.4
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 4.1e-210 734.9 434 81.6
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 2.7e-209 732.3 442 79.0
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 6.6e-208 727.6 420 82.6
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.1e-207 726.9 412 83.0
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 1.1e-207 726.9 429 81.6
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 2.5e-207 725.7 438 77.9
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 1.6e-206 723.0 451 78.7
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 6.8e-205 717.6 438 79.7
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 4.4e-204 714.9 437 79.4
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 7.6e-204 714.1 431 80.7
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 9.9e-204 713.8 431 79.6
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 1.3e-203 713.4 487 72.3
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 1.7e-203 713.0 431 79.6
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 6.4e-203 711.1 423 79.7
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 9.2e-202 707.2 417 81.1
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 9.6e-199 697.2 425 78.8
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.6e-198 696.4 426 77.7
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 6.2e-198 694.5 448 74.1
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 2.4e-197 692.6 460 73.3
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 5.2e-197 691.4 417 79.1
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 4.4e-196 688.3 438 73.3
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 9.9e-196 687.2 451 74.5
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 1.1e-194 683.7 427 78.5
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 2.4e-194 682.6 390 81.8
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 5.4e-194 681.4 436 75.5
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 1.2e-193 680.2 440 72.7
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 8.7e-192 674.1 447 71.6
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 1.9e-191 672.9 423 77.1
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 3.3e-191 672.2 422 73.9
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 5.6e-191 671.4 350 89.7
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 2.1e-190 669.5 425 73.9
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 4.8e-190 668.3 419 74.7
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 4.8e-190 668.3 446 70.4
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 1.5e-188 663.3 427 73.3
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 2.0e-188 662.9 435 71.7
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 9.9e-188 660.6 422 73.0
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.3e-187 660.2 435 71.5
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 2.2e-187 659.4 424 73.1
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 1.9e-186 656.4 420 74.0
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 2.7e-185 652.5 434 71.0
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 6.0e-185 651.4 424 75.0
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 1.1e-183 647.1 449 69.5
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.1e-183 647.1 394 79.7
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.5e-183 646.7 422 73.7
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 1.2e-180 637.1 453 68.2
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 1.4e-178 630.2 441 68.5
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.9e-178 629.8 418 71.1
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.2e-177 627.1 379 78.1
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.1e-177 626.3 443 70.2
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 1.3e-176 623.6 398 73.9
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 5.1e-176 621.7 441 68.5
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 8.7e-176 620.9 394 75.9
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.8e-171 605.5 422 67.8
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 3.8e-171 605.5 384 76.3
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 9.3e-170 600.9 398 73.6
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 4.6e-169 598.6 463 65.9
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 5.7e-167 591.7 423 67.4
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 9.6e-167 590.9 389 74.8
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 4.2e-162 575.5 315 85.7
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 7.9e-161 571.2 306 85.3
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.5e-156 557.0 346 76.3
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 7.9e-153 544.7 322 79.8
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 2.2e-142 510.0 338 73.4
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 8.5e-139 498.0 450 60.2
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 3.2e-138 496.1 327 74.3
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 9.7e-135 484.6 293 78.8
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 3.7e-126 456.1 471 51.8
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 4.8e-126 455.7 416 55.3
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 4.5e-124 449.1 353 64.6
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 2.6e-119 433.3 363 59.2
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 7.5e-119 431.8 321 66.0
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 5.4e-109 399.1 325 56.3
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 5.9e-108 395.6 218 80.3
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 8.3e-102 375.2 191 90.6
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 1.3e-94 351.3 429 48.3
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 5.1e-91 339.3 233 71.7
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 3.4e-87 326.6 259 64.9
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 4.2e-69 266.5 292 64.4
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 6.0e-68 262.7 260 56.2
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 9.6e-50 202.2 115 82.6
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 6.9e-48 196.1 169 65.1
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 4.5e-47 193.4 136 72.8
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 1.8e-35 154.8 117 68.4
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 2.0e-34 151.4 291 34.4
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 3.8e-30 137.1 77 80.5
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 7.9e-28 129.4 79 79.7
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 5.2e-27 126.7 274 33.6
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.1e-20 104.8 80 63.8
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 3.6e-20 104.0 320 29.1
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 7.7e-15 86.3 52 73.1
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.2e-10 72.4 88 51.1
QL12p008547 Quercus lobata HOM05D005140 ORTHO05D006288 2.6e-10 71.2 130 61.5
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.8e-09 67.8 29 93.1
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 2.7e-07 61.2 47 59.6
Dinv25151 Davidia involucrata HOM05D005140 ORTHO05D006288 3.5e-07 60.8 46 63.0
Dinv00162 Davidia involucrata HOM05D005140 ORTHO05D006288 7.7e-07 59.7 79 43.0
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 6.5e-06 56.6 28 89.3


User provided reference genes

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