Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.4e-196 689.5 362 100.0
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 5.9e-131 471.5 281 84.7
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.2e-128 463.8 282 86.9
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 7.1e-108 394.8 232 87.1
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 1.2e-102 377.5 225 80.4
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 1.0e-90 337.8 284 62.0
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 1.3e-90 337.4 282 61.3
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 6.6e-90 335.1 286 62.9
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 1.1e-89 334.3 282 64.2
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 1.5e-89 334.0 282 59.6
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.9e-89 333.6 286 62.9
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 3.3e-89 332.8 282 62.1
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 4.3e-89 332.4 282 61.0
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 9.6e-89 331.3 284 60.9
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 2.8e-88 329.7 282 61.0
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 2.8e-88 329.7 282 58.5
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-87 327.8 283 61.5
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 1.8e-87 327.0 282 59.2
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 1.8e-87 327.0 281 58.7
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 9.0e-87 324.7 283 64.7
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.2e-86 324.3 282 63.8
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.5e-86 323.9 285 61.1
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.0e-86 323.6 286 61.5
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 2.0e-86 323.6 285 59.6
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 3.4e-86 322.8 281 59.8
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 7.6e-86 321.6 288 57.3
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 1.3e-85 320.9 281 58.7
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 1.7e-85 320.5 228 68.0
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 1.7e-85 320.5 228 68.0
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 2.2e-85 320.1 282 64.2
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 2.9e-85 319.7 281 58.4
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 2.9e-85 319.7 282 58.2
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 3.8e-85 319.3 285 57.2
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 4.9e-85 318.9 282 61.3
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 8.4e-85 318.2 281 58.7
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 1.4e-84 317.4 265 63.8
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.4e-84 317.4 282 57.8
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 1.9e-84 317.0 281 58.4
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 1.9e-84 317.0 281 58.4
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 1.9e-84 317.0 282 58.5
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.2e-84 315.8 284 59.9
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 4.2e-84 315.8 282 57.1
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.4e-84 315.5 284 57.0
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 1.2e-83 314.3 283 58.3
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 2.7e-83 313.2 282 56.0
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 6.0e-83 312.0 286 55.2
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 7.9e-83 311.6 283 59.4
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.3e-82 310.8 216 68.5
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 1.3e-82 310.8 282 59.9
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 2.3e-82 310.1 281 56.2
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 2.3e-82 310.1 282 55.3
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.5e-81 307.4 283 56.5
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 4.3e-81 305.8 285 57.5
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 4.3e-81 305.8 285 57.5
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 7.4e-81 305.1 281 56.9
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 9.6e-81 304.7 282 55.7
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 2.8e-80 303.1 281 56.2
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 2.8e-80 303.1 310 52.6
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 3.7e-80 302.8 281 55.2
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 8.1e-80 301.6 283 55.5
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 8.1e-80 301.6 282 55.3
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 1.1e-79 301.2 285 55.4
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 1.1e-79 301.2 282 56.0
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 1.4e-79 300.8 229 65.9
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.0e-79 299.3 273 60.4
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 5.3e-79 298.9 281 55.9
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 5.3e-79 298.9 230 66.5
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 7.6e-78 295.0 281 54.8
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 9.9e-78 294.7 282 53.9
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 1.3e-77 294.3 282 54.3
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 1.3e-77 294.3 282 53.9
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 2.9e-77 293.1 341 50.4
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 2.9e-77 293.1 283 58.7
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 2.9e-77 293.1 243 61.7
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 4.9e-77 292.4 283 57.6
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 6.4e-77 292.0 286 54.5
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 8.4e-77 291.6 228 61.8
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 1.1e-76 291.2 309 52.1
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 1.1e-76 291.2 283 59.0
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 1.9e-76 290.4 282 59.6
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 2.4e-76 290.0 282 54.3
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 4.2e-76 289.3 264 58.3
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 2.7e-75 286.6 236 65.3
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 3.5e-75 286.2 229 61.1
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 3.9e-74 282.7 229 60.3
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 8.7e-74 281.6 233 62.2
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 1.1e-73 281.2 283 53.4
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 1.5e-73 280.8 284 53.5
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.9e-73 280.4 239 59.8
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 5.6e-73 278.9 230 62.2
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.6e-73 278.9 251 57.8
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 7.4e-73 278.5 189 71.4
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 1.3e-72 277.7 278 57.6
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 8.2e-72 275.0 323 48.6
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 1.4e-71 274.2 220 58.2
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 2.4e-71 273.5 286 52.4
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 3.1e-71 273.1 282 51.1
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 6.9e-71 271.9 282 53.2
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.0e-70 270.4 233 61.8
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 2.9e-69 266.5 281 51.2
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 1.9e-68 263.8 282 50.0
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 1.1e-65 254.6 281 47.0
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.4e-63 247.7 190 63.2
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 2.4e-63 246.9 267 51.3
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 7.6e-62 241.9 195 61.0
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.1e-60 238.0 287 46.7
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.2e-59 234.6 287 46.0
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 7.9e-59 231.9 230 55.2
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 6.9e-55 218.8 164 66.5
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 2.0e-54 217.2 215 53.0
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 2.2e-53 213.8 218 54.1
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 5.0e-53 212.6 237 54.4
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 7.2e-52 208.8 253 44.7
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 2.1e-51 207.2 242 57.0
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 7.9e-51 205.3 149 69.8
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 9.7e-49 198.4 213 52.6
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.5e-46 191.0 298 39.9
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 4.5e-46 189.5 175 56.6
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 1.0e-45 188.3 154 58.4
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 1.3e-45 188.0 206 50.0
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 1.4e-42 177.9 248 41.5
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 2.2e-40 170.6 277 39.4
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 4.1e-39 166.4 223 41.3
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.2e-38 164.9 106 75.5
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 5.5e-36 156.0 213 44.1
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 1.6e-35 154.5 170 51.2
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 4.0e-34 149.8 115 63.5
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 3.7e-32 143.3 285 35.8
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 1.1e-31 141.7 104 62.5
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.0e-30 137.5 115 61.7
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 6.5e-29 132.5 252 34.9
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 1.9e-28 131.0 217 37.3
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 6.8e-26 122.5 102 56.9
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 1.2e-25 121.7 199 39.2
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 3.5e-22 110.2 178 38.8
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 2.0e-14 84.3 212 32.1
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.3e-13 80.9 71 54.9
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 1.6e-11 74.7 212 27.4
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 6.0e-06 56.2 46 63.0


User provided reference genes

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