Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 0.0e+00 1290.4 663 100.0
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 0.0e+00 1152.1 663 88.8
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 0.0e+00 1135.2 663 88.2
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 3.3e-289 998.0 668 78.7
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 4.1e-194 682.2 673 58.5
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 5.7e-188 661.8 667 55.8
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 1.3e-187 660.6 663 55.4
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 5.9e-185 651.7 673 55.6
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 7.7e-185 651.4 668 54.6
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.5e-177 627.1 670 55.2
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 5.9e-177 625.2 658 54.9
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 1.4e-175 620.5 670 53.4
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 5.7e-172 608.6 710 50.8
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 7.4e-172 608.2 663 52.3
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 7.4e-172 608.2 719 49.8
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 9.7e-172 607.8 730 49.5
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 1.8e-170 603.6 711 50.9
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 1.2e-169 600.9 716 49.6
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 1.6e-169 600.5 741 48.3
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 1.7e-168 597.0 706 50.1
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.5e-167 594.0 725 49.2
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 1.9e-167 593.6 665 51.7
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 5.5e-167 592.0 701 50.4
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 7.2e-167 591.7 721 49.7
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 3.6e-166 589.3 736 49.3
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 1.4e-165 587.4 719 49.0
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 1.8e-165 587.0 722 49.0
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 3.0e-165 586.3 719 48.7
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 3.0e-165 586.3 682 51.6
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 3.3e-164 582.8 715 48.4
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 7.5e-164 581.6 715 48.3
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 2.4e-162 576.6 670 50.1
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 1.0e-160 571.2 668 50.6
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 3.8e-160 569.3 714 47.5
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 3.8e-160 569.3 722 48.2
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 6.5e-160 568.5 694 48.3
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 6.5e-160 568.5 654 49.8
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 2.5e-159 566.6 700 48.6
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 5.5e-159 565.5 668 51.0
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 7.2e-159 565.1 667 49.3
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 2.7e-158 563.1 709 48.4
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.0e-157 561.2 672 48.7
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 4.0e-157 559.3 725 47.4
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 6.8e-157 558.5 714 47.5
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 6.8e-157 558.5 642 50.8
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 5.7e-156 555.4 727 45.5
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 7.5e-156 555.1 674 49.9
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 4.8e-155 552.4 719 47.3
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 5.4e-154 548.9 737 46.3
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 9.1e-154 548.1 711 46.4
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 2.7e-153 546.6 673 48.3
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 3.5e-153 546.2 791 43.1
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 2.3e-152 543.5 680 48.7
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 2.3e-152 543.5 715 46.9
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 6.5e-152 542.0 667 48.4
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 1.9e-151 540.4 672 48.1
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.5e-151 540.0 680 48.8
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.6e-150 537.3 676 47.6
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 4.7e-150 535.8 732 46.0
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.4e-149 534.3 728 45.5
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.3e-149 533.5 757 43.9
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 3.4e-148 529.6 660 48.2
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 1.3e-147 527.7 762 44.2
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.4e-146 523.5 765 42.9
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 5.4e-146 522.3 698 46.3
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 9.2e-146 521.5 658 48.5
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 9.2e-146 521.5 668 47.3
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.0e-145 520.4 714 45.4
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 2.5e-143 513.5 673 45.9
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.6e-142 510.8 575 51.5
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 2.8e-142 510.0 667 45.4
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 4.7e-142 509.2 669 46.8
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 2.2e-139 500.4 727 44.0
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.8e-138 497.3 727 43.7
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 7.3e-135 485.3 670 44.6
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 8.0e-134 481.9 727 43.2
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.7e-131 473.0 682 43.5
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 1.4e-130 471.1 721 42.0
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 4.6e-129 466.1 762 41.1
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 3.9e-128 463.0 671 42.8
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 3.9e-128 463.0 748 41.4
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.3e-127 459.9 701 43.4
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 4.3e-127 459.5 745 41.2
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 5.6e-127 459.1 743 41.6
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 3.6e-126 456.4 677 43.1
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 4.7e-126 456.1 688 42.4
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 1.8e-125 454.1 737 41.0
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 9.5e-119 431.8 767 39.8
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 2.8e-118 430.3 614 43.6
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 4.7e-118 429.5 639 41.9
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 4.7e-118 429.5 656 40.2
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.9e-114 417.5 705 41.0
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 4.6e-113 412.9 864 35.2
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 4.7e-110 402.9 828 36.4
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 8.1e-110 402.1 659 41.0
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 1.8e-109 401.0 822 36.1
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 1.9e-106 391.0 848 35.3
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 2.7e-105 387.1 847 34.9
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 1.1e-101 375.2 511 48.7
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 5.3e-101 372.9 671 38.9
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 2.2e-99 367.5 730 36.0
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 2.9e-99 367.1 478 47.1
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 1.9e-95 354.4 823 34.9
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 3.5e-81 307.0 674 35.9
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 8.7e-80 302.4 690 33.6
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 1.9e-79 301.2 650 35.4
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 8.2e-78 295.8 678 34.1
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.5e-71 274.2 668 33.1
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 2.5e-66 257.7 720 29.0
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 9.4e-66 255.8 351 44.4
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 2.1e-65 254.6 628 33.8
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 3.6e-65 253.8 321 46.1
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 7.2e-58 229.6 679 28.7
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 3.1e-53 214.2 646 32.4
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 3.1e-53 214.2 884 24.9
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 2.0e-52 211.5 414 36.0
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 2.7e-49 201.1 676 27.7
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 1.4e-48 198.7 202 52.0
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.7e-46 191.8 260 42.3
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 7.5e-39 166.4 170 49.4
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 7.5e-39 166.4 170 49.4
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 2.0e-36 158.3 325 30.5
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 5.5e-34 150.2 128 60.2
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 5.2e-32 143.7 174 46.0
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 1.2e-31 142.5 139 58.3
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 1.0e-24 119.4 238 38.2
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 9.8e-23 112.8 82 69.5
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 4.6e-20 104.0 96 53.1
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.3e-16 91.7 103 49.5
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 1.3e-14 85.9 109 41.3
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 6.4e-14 83.6 100 44.0
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.9e-10 72.0 162 37.0
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 1.9e-10 72.0 54 68.5
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 6.4e-06 57.0 166 33.1


User provided reference genes

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