Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G008550 Citrullus lanatus HOM05D023844 ORTHO05D021165 3.2e-147 525.0 255 100.0
ClCG05G016400 Citrullus lanatus HOM05D000004 ORTHO05D000002 3.4e-24 116.3 128 47.7
ClCG02G010850 Citrullus lanatus HOM05D023844 ORTHO05D020470 2.4e-17 93.6 128 41.4
MELO3C029606.2 Cucumis melo HOM05D023844 ORTHO05D013069 6.0e-13 79.0 74 50.0
MELO3C034241.2 Cucumis melo HOM05D023844 ORTHO05D013069 5.1e-12 75.9 71 50.7
ClCG06G009980 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.5e-11 74.3 66 47.0
ClCG04G001760 Citrullus lanatus HOM05D000004 ORTHO05D000002 7.4e-11 72.0 149 34.2
ClCG05G013740 Citrullus lanatus HOM05D023487 ORTHO05D034708 2.8e-10 70.1 60 56.7
Actinidia03133 Actinidia chinensis HOM05D001410 ORTHO05D006840 5.3e-09 65.9 88 47.7
Actinidia20863 Actinidia chinensis HOM05D001410 ORTHO05D021165 6.9e-09 65.5 88 46.6
Duzib068G1356 Durio zibethinus HOM05D001410 ORTHO05D006840 9.0e-09 65.1 88 47.7
VMungo0464G0041 Vigna mungo HOM05D001410 ORTHO05D006840 9.0e-09 65.1 88 47.7
Cfa016279 Carpinus fangiana HOM05D001410 ORTHO05D006840 1.2e-08 64.7 88 46.6
Haze_00033 Corylus avellana HOM05D001410 ORTHO05D006840 1.2e-08 64.7 88 46.6
Glyma.09G133200 Glycine max HOM05D001410 ORTHO05D006840 1.2e-08 64.7 88 46.6
Glyma.16G179800 Glycine max HOM05D001410 ORTHO05D006840 1.2e-08 64.7 88 46.6
Oeu045369.1 Olea europaea HOM05D001410 ORTHO05D006840 1.2e-08 64.7 88 46.6
Aa31LG3G8870 Aethionema arabicum HOM05D001410 ORTHO05D006840 1.5e-08 64.3 88 47.7
AL8G26980 Arabidopsis lyrata HOM05D001410 ORTHO05D006840 1.5e-08 64.3 88 47.7
CARHR265490 Cardamine hirsuta HOM05D001410 ORTHO05D006840 1.5e-08 64.3 88 47.7
MELO3C019492.2 Cucumis melo HOM05D001410 ORTHO05D006840 1.5e-08 64.3 88 47.7
CsaV3_3G018830 Cucumis sativus L. HOM05D001410 ORTHO05D006840 1.5e-08 64.3 88 47.7
HPP92_015650 Vanilla planifolia HOM05D001410 ORTHO05D021165 1.5e-08 64.3 80 47.5
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 2.0e-08 63.9 88 46.6
COL.COLO4_36928 Corchorus olitorius HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
Duzib084G0352 Durio zibethinus HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
Thhalv10013193m.g Eutrema salsugineum HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
FvH4_5g00340 Fragaria vesca HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
FAN04G1960 Fragaria x ananassa HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
FAN08G3530 Fragaria x ananassa HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
FAN13G2235 Fragaria x ananassa HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
Hma1.2p1_0327F.1_g126300 Hydrangea macrophylla HOM05D001410 ORTHO05D006840 2.0e-08 63.9 109 39.4
Manes.14G023300 Manihot esculenta HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
Phvul.004G109800 Phaseolus vulgaris HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
Rhsim09G0200200 Rhododendron simsii HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
RcHm_v2.0_Chr7g0202211 Rosa chinensis HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
Sc09g0007270 Simmondsia chinensis HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
Solyc01g096870.4 Solanum lycopersicum HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
Sopen01g040580 Solanum pennellii HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
PGSC0003DMG400027526 Solanum tuberosum HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
SGA_v2.0_scaffold10G05300 Striga asiatica HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
Thecc.03G182500 Theobroma cacao HOM05D001410 ORTHO05D006840 2.0e-08 63.9 88 46.6
Cpa.g.sc107.96 Carica papaya HOM05D001410 ORTHO05D006840 2.6e-08 63.5 88 46.6
CiPaw.05G263200 Carya illinoinensis HOM05D001410 ORTHO05D006840 2.6e-08 63.5 88 46.6
Migut.F01092 Erythranthe guttata HOM05D001410 ORTHO05D006840 2.6e-08 63.5 88 45.5
Nitab4.5_0005056g0110 Nicotiana tabacum HOM05D001410 ORTHO05D006840 2.6e-08 63.5 88 46.6
Potri.017G142500 Populus trichocarpa HOM05D001410 ORTHO05D006840 2.6e-08 63.5 88 45.5
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 2.6e-08 63.5 88 45.5
Hund12464 Selenicereus undatus HOM05D001410 ORTHO05D006840 2.6e-08 63.5 88 45.5
unitig_60.g25549 Utricularia gibba HOM05D001410 ORTHO05D006840 2.6e-08 63.5 88 46.6
vmacro09819 Vaccinium macrocarpon HOM05D001410 ORTHO05D006840 2.6e-08 63.5 88 45.5
AT5G52520 Arabidopsis thaliana HOM05D001410 ORTHO05D006840 3.4e-08 63.2 88 46.6
Carub.0008s1264 Capsella rubella HOM05D001410 ORTHO05D006840 3.4e-08 63.2 88 46.6
Dinv28396 Davidia involucrata HOM05D001410 ORTHO05D006840 3.4e-08 63.2 88 46.6
SalBow2G1075 Salvia bowleyana HOM05D001410 ORTHO05D006840 3.4e-08 63.2 88 45.5
SalBow2G2133 Salvia bowleyana HOM05D001410 ORTHO05D006840 3.4e-08 63.2 88 45.5
Ciclev10004659m.g Citrus clementina HOM05D001410 ORTHO05D006840 4.5e-08 62.8 88 45.5
DCAR_009384 Daucus carota HOM05D001410 ORTHO05D006840 4.5e-08 62.8 88 45.5
Gohir.A12G255700 Gossypium hirsutum HOM05D001410 ORTHO05D006840 4.5e-08 62.8 88 45.5
Gohir.D12G257100 Gossypium hirsutum HOM05D001410 ORTHO05D006840 4.5e-08 62.8 88 45.5
Gorai.008G275300 Gossypium raimondii HOM05D001410 ORTHO05D006840 4.5e-08 62.8 88 45.5
Psat5g045320 Pisum sativum HOM05D001410 ORTHO05D006840 4.5e-08 62.8 88 45.5
Sed0018120 Sechium edule HOM05D001410 ORTHO05D006840 4.5e-08 62.8 88 46.6
TPR.G26044 Trifolium pratense HOM05D001410 ORTHO05D006840 4.5e-08 62.8 88 45.5
TWI14G0872 Tripterygium wilfordii HOM05D001410 ORTHO05D006840 4.5e-08 62.8 88 45.5
TWI39G0800 Tripterygium wilfordii HOM05D001410 ORTHO05D006840 4.5e-08 62.8 88 45.5
Zm00001eb300750 Zea mays HOM05D001410 ORTHO05D006840 4.5e-08 62.8 88 46.6
CSS0001759 Camellia sinensis var. sinensis HOM05D001410 ORTHO05D006840 5.8e-08 62.4 88 44.3
Ca_15983_v3 Cicer arietinum L. HOM05D001410 ORTHO05D006840 5.8e-08 62.4 88 44.3
Lj1C1004T3 Lonicera japonica HOM05D001410 ORTHO05D006840 5.8e-08 62.4 88 44.3
Medtr3g100910 Medicago truncatula HOM05D001410 ORTHO05D006840 5.8e-08 62.4 88 44.3
QL09p013112 Quercus lobata HOM05D001410 ORTHO05D006840 5.8e-08 62.4 88 45.5
Sp6g14710 Schrenkiella parvula HOM05D001410 ORTHO05D006840 5.8e-08 62.4 88 46.6
ClCG09G015910 Citrullus lanatus HOM05D023487 ORTHO05D034708 7.6e-08 62.0 65 46.2
Oeu033106.1 Olea europaea HOM05D001410 ORTHO05D006840 7.6e-08 62.0 88 44.3
PGR042G0190 Punica granatum HOM05D001410 ORTHO05D006840 7.6e-08 62.0 88 46.6
arahy.Tifrunner.gnm1.ann1.18GXDP Arachis hypogaea HOM05D001410 ORTHO05D006840 1.0e-07 61.6 88 44.3
arahy.Tifrunner.gnm1.ann1.BA6YY5 Arachis hypogaea HOM05D001410 ORTHO05D006840 1.0e-07 61.6 88 44.3
DCAR_014517 Daucus carota HOM05D001410 ORTHO05D006840 1.0e-07 61.6 88 45.5
Lsat_1_v5_gn_2_131140 Lactuca sativa HOM05D001410 ORTHO05D006840 1.0e-07 61.6 88 44.3
THA.LOC104811964 Tarenaya hassleriana HOM05D001410 ORTHO05D006840 1.0e-07 61.6 88 45.5
ATR0661G435 Amborella trichopoda HOM05D001410 ORTHO05D006840 1.3e-07 61.2 86 43.0
EL10Ac2g03345 Beta vulgaris HOM05D001410 ORTHO05D006840 1.3e-07 61.2 88 44.3
BcaB08g35606 Brassica carinata HOM05D001410 ORTHO05D006840 1.3e-07 61.2 88 45.5
BcaC03g14524 Brassica carinata HOM05D001410 ORTHO05D006840 1.3e-07 61.2 88 45.5
A02p11770 Brassica napus HOM05D001410 ORTHO05D006840 1.3e-07 61.2 88 45.5
BNapus_Darmor_BZH_scaffold_232p00120 Brassica napus HOM05D001410 ORTHO05D006840 1.3e-07 61.2 88 45.5
C02p19590 Brassica napus HOM05D001410 ORTHO05D006840 1.3e-07 61.2 88 45.5
BolC2t08096H Brassica oleracea HOM05D001410 ORTHO05D006840 1.3e-07 61.2 88 45.5
BraA02t06242Z Brassica rapa HOM05D001410 ORTHO05D006840 1.3e-07 61.2 88 45.5
CDE11G0932 Ceratophyllum demersum HOM05D001410 ORTHO05D006840 1.3e-07 61.2 88 44.3
Eucgr.A02753 Eucalyptus grandis HOM05D001410 ORTHO05D006840 1.3e-07 61.2 88 45.5
PSO541G3847 Papaver somniferum HOM05D001410 ORTHO05D006840 1.3e-07 61.2 88 44.3
PSO675G7606 Papaver somniferum HOM05D001410 ORTHO05D006840 1.3e-07 61.2 88 44.3
BcaB05g21963 Brassica carinata HOM05D001410 ORTHO05D006840 1.7e-07 60.8 88 45.5
BcaC04g20579 Brassica carinata HOM05D001410 ORTHO05D006840 1.7e-07 60.8 88 46.6
C09p41940 Brassica napus HOM05D001410 ORTHO05D006840 1.7e-07 60.8 88 46.6
BolC9t57078H Brassica oleracea HOM05D001410 ORTHO05D006840 1.7e-07 60.8 88 46.6
ECA238G2766 Erigeron canadensis HOM05D001410 ORTHO05D006840 1.7e-07 60.8 88 45.5
HanXRQChr07g0206941 Helianthus annuus HOM05D001410 ORTHO05D006840 1.7e-07 60.8 88 45.5
Lj2g0023395 Lotus japonicus HOM05D001410 ORTHO05D006840 1.7e-07 60.8 88 43.2
ClCG03G010050 Citrullus lanatus HOM05D016213 ORTHO05D000002 2.2e-07 60.5 66 43.9
HanXRQChr04g0120461 Helianthus annuus HOM05D001410 ORTHO05D006840 2.2e-07 60.5 88 44.3
MBI04_g30786_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006840 2.2e-07 60.5 88 45.5
Prupe.5G076000 Prunus persica HOM05D001410 ORTHO05D006840 2.2e-07 60.5 88 44.3
ClCG05G008280 Citrullus lanatus HOM05D001410 ORTHO05D006840 3.8e-07 59.7 88 44.3
Nn1g01600 Nelumbo nucifera HOM05D001410 ORTHO05D006840 5.0e-07 59.3 88 44.3
CANSAT21G1393 Cannabis sativa HOM05D001410 ORTHO05D006840 6.5e-07 58.9 88 43.2
Aqoxy7G00253 Aquilegia oxysepala HOM05D001410 ORTHO05D006840 1.4e-06 57.8 88 43.2
ClCG06G009760 Citrullus lanatus HOM05D023487 ORTHO05D021165 1.4e-06 57.8 45 55.6
ClCG09G014290 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.9e-06 57.4 66 45.5
Lalb_Chr02g0141201 Lupinus albus HOM05D001410 ORTHO05D006840 1.9e-06 57.4 88 40.9
Ah.16g106580 Amaranthus hybridus HOM05D001410 ORTHO05D006840 2.5e-06 57.0 43 62.8
BcaNung07179 Brassica carinata HOM05D001410 ORTHO05D006840 2.5e-06 57.0 43 65.1
AUR62037623 Chenopodium quinoa HOM05D001410 ORTHO05D006840 2.5e-06 57.0 88 40.9
AUR62040861 Chenopodium quinoa HOM05D001410 ORTHO05D006840 2.5e-06 57.0 88 40.9
ClCG08G003500 Citrullus lanatus HOM05D023844 ORTHO05D020470 4.2e-06 56.2 76 39.5
HPP92_015654 Vanilla planifolia HOM05D001410 ORTHO05D021165 4.2e-06 56.2 43 62.8
EL10Ac2g03885 Beta vulgaris HOM05D001410 ORTHO05D021165 9.3e-06 55.1 43 60.5
SEGI_03261 Sequoiadendron giganteum HOM05D001410 ORTHO05D006840 9.3e-06 55.1 88 43.2


User provided reference genes

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