Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 0.0e+00 1877.1 997 100.0
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 0.0e+00 1579.7 1018 84.7
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 0.0e+00 1500.7 1014 82.4
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 0.0e+00 1477.2 1023 80.2
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 0.0e+00 1085.1 941 62.8
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 0.0e+00 1083.9 1019 59.9
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 0.0e+00 1079.7 933 63.1
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 6.1e-303 1044.3 892 64.0
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 4.8e-300 1034.6 938 60.7
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 5.9e-298 1027.7 938 60.8
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 2.3e-294 1015.8 939 60.2
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 9.8e-293 1010.4 895 61.0
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 2.2e-292 1009.2 916 61.1
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 6.3e-292 1007.7 933 60.9
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 8.3e-292 1007.3 926 59.8
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 2.7e-290 1002.3 1017 56.2
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 2.9e-289 998.8 1021 58.5
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 8.6e-289 997.3 923 58.6
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.5e-288 996.5 888 60.7
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 5.2e-286 988.0 938 59.6
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 3.4e-285 985.3 863 62.0
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 7.5e-285 984.2 843 63.0
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 9.8e-285 983.8 926 59.0
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 1.7e-284 983.0 929 59.5
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 2.9e-284 982.2 918 58.8
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 1.1e-283 980.3 910 58.4
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 4.1e-283 978.4 940 59.0
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 7.0e-283 977.6 1020 56.7
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.2e-282 976.9 1026 58.9
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 3.5e-282 975.3 921 59.3
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 5.9e-282 974.5 853 61.2
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 1.7e-281 973.0 924 58.8
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 3.9e-281 971.8 844 62.6
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 5.0e-281 971.5 918 59.3
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 3.3e-280 968.8 1027 57.4
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 5.6e-280 968.0 836 62.4
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 1.2e-279 966.8 935 56.9
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 1.2e-279 966.8 927 58.4
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 1.2e-277 960.3 933 56.3
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 7.5e-277 957.6 1029 56.2
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 2.4e-275 952.6 940 56.2
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 2.7e-274 949.1 949 55.4
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 4.6e-274 948.3 1008 54.9
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 7.8e-274 947.6 987 55.2
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 5.0e-273 944.9 844 60.7
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 2.5e-272 942.6 939 55.4
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 3.3e-272 942.2 947 55.8
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 4.7e-271 938.3 984 54.8
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 5.2e-270 934.9 851 59.0
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 2.0e-269 932.9 911 56.0
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 2.0e-269 932.9 942 55.5
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 8.3e-268 927.5 857 58.1
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 9.2e-267 924.1 836 58.7
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 1.2e-266 923.7 765 64.1
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 1.0e-265 920.6 941 55.0
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 3.3e-264 915.6 922 56.8
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 2.8e-263 912.5 828 60.0
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 4.7e-263 911.8 860 57.7
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 1.1e-262 910.6 995 54.1
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 4.0e-262 908.7 853 57.6
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 8.9e-262 907.5 926 54.3
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 4.4e-261 905.2 837 57.6
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 7.6e-261 904.4 906 54.7
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 2.8e-255 885.9 823 59.1
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 8.1e-255 884.4 862 57.5
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.1e-254 884.0 927 53.1
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 1.2e-253 880.6 815 58.7
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 1.2e-253 880.6 820 58.7
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 2.2e-252 876.3 857 57.3
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 4.9e-252 875.2 846 57.3
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 4.9e-252 875.2 822 58.6
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 4.9e-252 875.2 924 55.2
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 1.1e-251 874.0 760 60.3
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 2.4e-251 872.8 826 59.2
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 5.6e-248 861.7 976 51.5
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 2.8e-247 859.4 912 52.4
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 1.2e-245 854.0 825 57.1
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 1.2e-245 854.0 825 57.0
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 1.3e-244 850.5 828 56.6
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 1.7e-244 850.1 852 56.1
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 1.7e-244 850.1 852 56.1
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 6.4e-244 848.2 821 57.6
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 6.4e-244 848.2 829 56.8
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 1.9e-243 846.7 934 53.1
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 3.2e-243 845.9 823 57.0
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 4.6e-242 842.0 820 57.0
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 1.3e-241 840.5 791 58.5
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 6.6e-241 838.2 932 52.1
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 3.4e-237 825.9 877 55.1
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 2.2e-236 823.2 718 61.3
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 1.2e-234 817.4 952 50.5
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 7.1e-227 791.6 870 53.1
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 1.8e-222 776.9 910 50.1
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 5.3e-222 775.4 912 49.7
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 1.0e-220 771.2 820 52.3
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 7.4e-216 755.0 829 53.4
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 1.8e-209 733.8 746 54.0
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 8.2e-207 724.9 908 46.6
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 2.9e-159 567.0 507 59.4
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 1.6e-154 551.2 883 42.1
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 2.9e-151 540.4 872 41.7
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 3.8e-143 513.5 865 39.1
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 2.8e-138 497.3 855 39.1
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 2.9e-135 487.3 697 44.8
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 3.3e-131 473.8 510 53.3
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 1.5e-123 448.4 460 53.0
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 3.5e-117 427.2 355 60.6
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 2.1e-93 348.2 1096 30.8
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 3.8e-87 327.4 246 67.9
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 3.8e-79 300.8 534 39.7
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 2.6e-67 261.5 749 30.3
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 3.4e-51 208.0 201 56.2
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 2.5e-46 191.8 107 86.0
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 5.8e-43 180.6 369 36.0
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 9.8e-43 179.9 106 82.1
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 3.3e-38 164.9 308 39.6
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 3.4e-35 154.8 263 37.6
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 6.2e-29 134.0 110 64.5
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 5.8e-27 127.5 701 24.1
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 2.9e-26 125.2 150 46.7
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.6e-21 109.4 73 72.6
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.7e-15 89.4 352 35.8
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.5e-11 76.3 46 76.1
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 2.0e-11 75.9 111 36.9
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 4.5e-11 74.7 169 32.0
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 1.7e-10 72.8 163 31.3
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 4.9e-10 71.2 103 38.8
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 2.4e-09 68.9 170 30.6
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 4.2e-09 68.2 110 36.4
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 5.4e-09 67.8 111 35.1
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 7.1e-09 67.4 89 38.2
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.2e-08 66.6 95 36.8
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 2.1e-08 65.9 103 36.9
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 1.0e-07 63.5 95 35.8
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.3e-07 63.2 73 42.5
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 1.8e-07 62.8 75 40.0
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 1.8e-07 62.8 89 40.4
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.3e-07 62.4 73 41.1
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 2.3e-07 62.4 162 30.9
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 2.3e-07 62.4 64 45.3
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 2.3e-07 62.4 64 45.3
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 2.3e-07 62.4 78 41.0
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 3.9e-07 61.6 89 38.2
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 5.1e-07 61.2 89 37.1
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 6.7e-07 60.8 73 39.7
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 8.7e-07 60.5 113 32.7
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 8.7e-07 60.5 113 32.7
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 1.1e-06 60.1 89 37.1
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 2.5e-06 58.9 126 31.0
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 3.3e-06 58.5 89 34.8
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 3.3e-06 58.5 88 35.2
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 4.3e-06 58.2 95 33.7
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 5.6e-06 57.8 86 36.0
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 7.4e-06 57.4 103 35.0
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 7.4e-06 57.4 103 35.0
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 7.4e-06 57.4 124 31.5
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 7.4e-06 57.4 89 37.1
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 7.4e-06 57.4 66 45.5
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 7.4e-06 57.4 93 36.6
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 9.6e-06 57.0 63 42.9
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 9.6e-06 57.0 64 42.2
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 9.6e-06 57.0 151 29.8


User provided reference genes

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