Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 3.9e-199 698.0 363 100.0
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 3.3e-166 588.6 339 90.9
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 1.8e-164 582.8 338 89.9
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 3.7e-157 558.5 337 85.8
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 2.7e-152 542.3 339 85.8
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 2.0e-131 473.0 354 68.1
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 1.0e-130 470.7 355 67.3
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 1.1e-129 467.2 354 67.2
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 9.5e-129 464.2 351 68.1
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 1.2e-126 457.2 353 67.1
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 2.2e-125 453.0 353 66.0
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 6.4e-125 451.4 352 65.6
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.9e-124 449.9 352 67.0
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 2.4e-124 449.5 374 65.0
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 2.4e-124 449.5 354 65.0
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 7.0e-124 448.0 374 64.4
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 3.5e-123 445.7 354 65.3
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 1.0e-122 444.1 350 66.6
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 1.3e-122 443.7 354 64.4
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 1.3e-122 443.7 353 64.3
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.3e-122 443.7 352 65.3
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 2.3e-122 443.0 359 63.0
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 5.0e-122 441.8 356 62.9
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 5.0e-122 441.8 355 64.8
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 5.0e-122 441.8 354 65.3
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 6.6e-122 441.4 357 63.6
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 6.6e-122 441.4 355 65.1
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 8.6e-122 441.0 352 64.8
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 1.5e-121 440.3 355 64.5
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 1.5e-121 440.3 355 64.8
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 4.3e-121 438.7 354 65.0
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 5.6e-121 438.3 357 63.6
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 7.3e-121 438.0 360 64.4
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 1.6e-120 436.8 350 66.9
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 2.1e-120 436.4 355 63.1
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 2.1e-120 436.4 355 63.1
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 2.1e-120 436.4 373 62.5
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 3.6e-120 435.6 357 65.0
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 6.2e-120 434.9 339 65.8
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 6.2e-120 434.9 363 63.6
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 1.1e-119 434.1 372 61.0
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 2.3e-119 433.0 352 62.8
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 2.3e-119 433.0 355 65.1
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 2.3e-119 433.0 353 65.2
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 3.1e-119 432.6 339 65.5
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 4.0e-119 432.2 359 62.7
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 6.8e-119 431.4 351 65.0
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 6.8e-119 431.4 351 65.0
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 6.8e-119 431.4 351 63.8
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 8.9e-119 431.0 358 61.2
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 8.9e-119 431.0 354 63.0
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 1.5e-118 430.3 355 63.7
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 2.0e-118 429.9 377 60.5
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 3.4e-118 429.1 356 62.4
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 4.4e-118 428.7 370 60.5
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 7.5e-118 427.9 373 60.6
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 7.5e-118 427.9 355 64.2
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 9.9e-118 427.6 372 62.6
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 1.3e-117 427.2 362 60.8
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.3e-117 427.2 356 62.9
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 1.7e-117 426.8 362 60.5
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.2e-117 426.4 339 64.6
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 2.4e-116 422.9 359 62.4
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.4e-116 422.9 365 61.1
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 4.1e-116 422.2 361 62.0
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 7.1e-116 421.4 356 60.4
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 9.2e-116 421.0 388 57.7
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 2.1e-115 419.9 368 60.9
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 2.7e-115 419.5 376 59.8
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 2.7e-115 419.5 359 61.8
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 2.7e-115 419.5 393 58.0
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.7e-115 419.5 352 61.9
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 4.6e-115 418.7 362 59.9
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.3e-114 417.2 352 61.9
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 1.7e-114 416.8 367 58.9
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 3.0e-114 416.0 358 63.4
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 3.0e-114 416.0 373 58.7
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 3.9e-114 415.6 373 58.4
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 6.6e-114 414.8 359 60.7
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 8.6e-114 414.5 355 62.3
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 1.1e-113 414.1 357 60.5
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 2.5e-113 412.9 337 64.1
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 3.3e-113 412.5 376 59.0
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 3.3e-113 412.5 355 63.4
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 4.3e-113 412.1 363 61.7
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 4.3e-113 412.1 342 59.9
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 1.1e-111 407.5 355 62.3
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 1.1e-111 407.5 357 58.8
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 1.1e-111 407.5 374 58.3
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 1.8e-111 406.8 373 57.1
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 2.4e-111 406.4 339 62.2
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 6.8e-111 404.8 375 60.5
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 1.2e-110 404.1 368 59.5
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 3.4e-110 402.5 312 66.0
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 4.4e-110 402.1 372 56.2
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 4.4e-110 402.1 353 60.3
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 9.9e-110 401.0 346 61.3
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 1.3e-109 400.6 350 58.3
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 1.7e-109 400.2 345 58.6
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 2.2e-109 399.8 339 60.5
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 2.9e-109 399.4 377 56.5
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 2.9e-109 399.4 369 58.8
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 8.4e-109 397.9 344 61.0
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 1.4e-108 397.1 370 55.4
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.4e-108 397.1 359 58.2
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 3.2e-108 396.0 338 59.5
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 3.2e-108 396.0 369 58.0
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 5.4e-108 395.2 340 58.2
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 1.6e-107 393.7 344 61.9
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 2.1e-107 393.3 336 60.1
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 2.1e-107 393.3 348 59.5
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 6.0e-107 391.7 342 60.5
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 1.0e-106 391.0 353 58.9
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 1.3e-106 390.6 389 54.5
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 1.3e-106 390.6 389 54.5
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 5.1e-106 388.7 381 54.3
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 6.6e-106 388.3 368 57.6
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 2.5e-105 386.3 382 54.2
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 3.3e-105 386.0 390 54.4
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 2.8e-104 382.9 372 58.9
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 3.6e-104 382.5 377 57.6
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 6.2e-104 381.7 288 68.8
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 8.1e-104 381.3 353 56.1
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 3.1e-103 379.4 318 63.5
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 5.2e-103 378.6 339 59.6
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 5.2e-103 378.6 346 58.1
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 6.9e-103 378.3 344 55.2
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 9.0e-103 377.9 341 62.2
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 1.5e-102 377.1 338 55.3
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 3.8e-101 372.5 369 54.5
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 8.4e-101 371.3 367 57.8
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 5.4e-100 368.6 384 55.5
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 1.3e-98 364.0 290 64.8
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 2.5e-97 359.8 376 52.7
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 2.5e-97 359.8 376 52.7
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 1.6e-96 357.1 373 51.5
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 3.6e-96 355.9 390 54.1
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 3.4e-94 349.4 372 54.3
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.7e-93 347.1 368 56.5
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 3.8e-93 345.9 370 54.3
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 6.4e-93 345.1 356 54.5
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 1.2e-91 340.9 346 55.5
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 2.8e-88 329.7 356 54.5
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 5.8e-86 322.0 361 51.8
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 3.5e-83 312.8 301 54.5
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 1.1e-81 307.8 313 55.0
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 1.5e-81 307.4 309 57.0
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 1.7e-77 293.9 308 53.9
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 3.9e-74 282.7 355 48.7
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 2.2e-69 266.9 331 45.9
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 8.5e-69 265.0 305 48.5
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 1.8e-66 257.3 293 49.5
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 4.3e-65 252.7 252 54.0
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 4.1e-63 246.1 356 43.8
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 9.1e-63 245.0 350 44.9
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 4.2e-60 236.1 321 44.9
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 1.1e-55 221.5 246 48.8
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 1.1e-55 221.5 397 36.5
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 6.1e-51 205.7 337 38.9
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.5e-36 157.9 172 44.8
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 5.9e-30 136.0 219 40.6
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 7.7e-30 135.6 221 39.8
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 2.5e-28 130.6 219 40.2
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 2.5e-28 130.6 105 58.1
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 2.8e-27 127.1 309 30.4
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 1.1e-23 115.2 113 54.0
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 1.8e-23 114.4 111 55.0
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 2.4e-23 114.0 113 53.1
ECA246G4346 Erigeron canadensis HOM05D000087 ORTHO05D009473 1.3e-21 108.2 98 59.2
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 5.0e-21 106.3 118 48.3
ECA246G0440 Erigeron canadensis HOM05D003678 ORTHO05D004340 3.3e-20 103.6 74 60.8
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 1.5e-17 94.7 344 28.8
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 2.6e-17 94.0 144 49.3
BcaC06g31298 Brassica carinata HOM05D003678 ORTHO05D004340 4.9e-16 89.7 56 71.4
Cre17.g716400 Chlamydomonas reinhardtii HOM05D003678 ORTHO05D004340 1.2e-14 85.1 419 29.8
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 4.6e-14 83.2 95 49.5
BcaC09g48197 Brassica carinata HOM05D003678 ORTHO05D011193 5.0e-13 79.7 114 43.9
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 1.1e-12 78.6 117 43.6
Actinidia14145 Actinidia chinensis HOM05D003678 ORTHO05D004340 2.5e-12 77.4 87 47.1
BcaC09g48198 Brassica carinata HOM05D003678 ORTHO05D004340 3.3e-12 77.0 87 50.6
BcaC05g28588 Brassica carinata HOM05D015584 ORTHO05D016118 5.8e-09 66.2 39 74.4
Cfa024431 Carpinus fangiana HOM05D003678 ORTHO05D124744 1.2e-06 58.5 85 38.8


User provided reference genes

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