Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G000120 Citrullus lanatus HOM05D004387 ORTHO05D005218 9.2e-63 243.4 127 100.0
MELO3C023136.2 Cucumis melo HOM05D004387 ORTHO05D005218 1.9e-60 235.7 127 94.5
Sed0012804 Sechium edule HOM05D004387 ORTHO05D005218 7.3e-60 233.8 127 94.5
CsaV3_4G011700 Cucumis sativus L. HOM05D004387 ORTHO05D005218 9.5e-60 233.4 127 94.5
Potri.016G055600 Populus trichocarpa HOM05D004387 ORTHO05D005218 1.1e-50 203.4 127 81.1
Manes.08G050500 Manihot esculenta HOM05D004387 ORTHO05D005218 4.0e-50 201.4 127 81.1
Potri.006G051200 Populus trichocarpa HOM05D004387 ORTHO05D005218 4.0e-50 201.4 127 80.3
Sabra06G0035900 Salix brachista HOM05D004387 ORTHO05D005218 7.6e-49 197.2 127 78.0
Cc07_g20870 Coffea canephora HOM05D004387 ORTHO05D005218 1.7e-48 196.1 127 77.2
Dinv12482 Davidia involucrata HOM05D004387 ORTHO05D005218 2.9e-48 195.3 127 79.5
CSS0003189 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 3.8e-48 194.9 127 78.7
Rhsim09G0155500 Rhododendron simsii HOM05D004387 ORTHO05D005218 3.8e-48 194.9 127 80.3
Cc06_g17110 Coffea canephora HOM05D004387 ORTHO05D005218 4.9e-48 194.5 127 76.4
COL.COLO4_28283 Corchorus olitorius HOM05D004387 ORTHO05D005218 6.4e-48 194.1 127 78.7
Hma1.2p1_0953F.1_g241060 Hydrangea macrophylla HOM05D004387 ORTHO05D005218 8.4e-48 193.7 127 77.2
CiPaw.09G038200 Carya illinoinensis HOM05D004387 ORTHO05D005218 1.1e-47 193.4 127 78.0
Dinv39602 Davidia involucrata HOM05D004387 ORTHO05D005218 1.1e-47 193.4 127 78.0
QL02p103266 Quercus lobata HOM05D004387 ORTHO05D005218 1.9e-47 192.6 126 77.8
Atru.chr1.1097 Acer truncatum HOM05D004387 ORTHO05D005218 3.2e-47 191.8 127 76.4
TWI77G0383 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 7.1e-47 190.7 127 77.2
Duzib093G1767 Durio zibethinus HOM05D004387 ORTHO05D005218 9.3e-47 190.3 126 75.4
Thecc.05G153400 Theobroma cacao HOM05D004387 ORTHO05D005218 9.3e-47 190.3 127 75.6
Cpa.g.sc3.336 Carica papaya HOM05D004387 ORTHO05D005218 1.2e-46 189.9 127 74.0
Ciclev10005512m.g Citrus clementina HOM05D004387 ORTHO05D005218 1.2e-46 189.9 127 77.2
MD12G1073800 Malus domestica HOM05D004387 ORTHO05D005218 1.2e-46 189.9 127 77.2
RcHm_v2.0_Chr3g0482341 Rosa chinensis HOM05D004387 ORTHO05D005218 1.6e-46 189.5 128 78.1
Prupe.7G061000 Prunus persica HOM05D004387 ORTHO05D005218 2.7e-46 188.7 127 77.2
TWI74G1664 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 2.7e-46 188.7 127 76.4
FAN05G1657 Fragaria x ananassa HOM05D004387 ORTHO05D005218 3.5e-46 188.3 128 77.3
FAN02G2904 Fragaria x ananassa HOM05D004387 ORTHO05D005218 4.6e-46 188.0 128 76.6
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 6.0e-46 187.6 128 76.6
Gohir.A02G158900 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.3e-45 186.4 127 74.8
FvH4_6g23810 Fragaria vesca HOM05D004387 ORTHO05D005218 1.7e-45 186.0 128 76.6
Gohir.D01G008666 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.7e-45 186.0 126 75.4
Gorai.002G116000 Gossypium raimondii HOM05D004387 ORTHO05D005218 1.7e-45 186.0 127 74.8
Nitab4.5_0009442g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 1.7e-45 186.0 124 75.8
Gohir.A01G009000 Gossypium hirsutum HOM05D004387 ORTHO05D005218 2.3e-45 185.7 127 74.0
Lju124A41T49 Lonicera japonica HOM05D004387 ORTHO05D005218 3.9e-45 184.9 128 75.8
Glyma.08G246800 Glycine max HOM05D004387 ORTHO05D005218 5.1e-45 184.5 127 74.0
Actinidia17236 Actinidia chinensis HOM05D004387 ORTHO05D005218 6.6e-45 184.1 127 74.8
Haze_19856 Corylus avellana HOM05D004387 ORTHO05D005218 6.6e-45 184.1 127 74.8
GSVIVG01033276001 Vitis vinifera HOM05D004387 ORTHO05D005218 6.6e-45 184.1 127 74.0
CAN.G128.9 Capsicum annuum HOM05D004387 ORTHO05D005218 8.7e-45 183.7 126 75.4
Gohir.D01G090600 Gossypium hirsutum HOM05D004387 ORTHO05D005218 8.7e-45 183.7 127 74.0
Cfa016818 Carpinus fangiana HOM05D004387 ORTHO05D005218 1.1e-44 183.3 127 73.2
Eucgr.A00059 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.9e-44 182.6 127 71.7
Peaxi162Scf00354g00222 Petunia axillaris HOM05D004387 ORTHO05D005218 2.5e-44 182.2 127 73.2
Nitab4.5_0004587g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 3.3e-44 181.8 124 74.2
vmacro09074 Vaccinium macrocarpon HOM05D004387 ORTHO05D005218 3.3e-44 181.8 151 67.5
Eucgr.A00263 Eucalyptus grandis HOM05D004387 ORTHO05D005218 4.3e-44 181.4 127 71.7
MBI11_g09466_MAGBIO Magnolia biondii HOM05D004387 ORTHO05D005218 4.3e-44 181.4 127 71.7
Sc13g0001760 Simmondsia chinensis HOM05D004387 ORTHO05D005218 4.3e-44 181.4 127 70.9
Sopen10g030740 Solanum pennellii HOM05D004387 ORTHO05D005218 7.3e-44 180.6 126 73.0
CANSAT21G1698 Cannabis sativa HOM05D004387 ORTHO05D005218 9.6e-44 180.3 127 74.8
Solyc10g080130.3 Solanum lycopersicum HOM05D004387 ORTHO05D005218 9.6e-44 180.3 126 73.0
Lalb_Chr20g0110501 Lupinus albus HOM05D004387 ORTHO05D005218 1.3e-43 179.9 126 73.0
PGSC0003DMG400023725 Solanum tuberosum HOM05D004387 ORTHO05D005218 1.3e-43 179.9 126 72.2
DCAR_013603 Daucus carota HOM05D004387 ORTHO05D005218 1.6e-43 179.5 126 72.2
FAN14G1242 Fragaria x ananassa HOM05D004387 ORTHO05D005218 2.1e-43 179.1 120 79.2
Lalb_Chr01g0017301 Lupinus albus HOM05D004387 ORTHO05D005218 2.1e-43 179.1 127 71.7
Oeu017945.1 Olea europaea HOM05D004387 ORTHO05D005218 2.1e-43 179.1 127 71.7
ECA248G3203 Erigeron canadensis HOM05D004387 ORTHO05D005218 2.8e-43 178.7 127 70.9
TAR633G2397 Trochodendron aralioides HOM05D004387 ORTHO05D005218 2.8e-43 178.7 126 74.6
CAN.G1001.5 Capsicum annuum HOM05D004387 ORTHO05D005218 3.6e-43 178.3 126 72.2
Lsat_1_v5_gn_5_161440 Lactuca sativa HOM05D004387 ORTHO05D005218 3.6e-43 178.3 127 70.1
Solyc06g075390.4 Solanum lycopersicum HOM05D004387 ORTHO05D005218 6.2e-43 177.6 125 72.0
Migut.K00090 Erythranthe guttata HOM05D004387 ORTHO05D005218 1.1e-42 176.8 128 71.9
Glyma.18G267600 Glycine max HOM05D004387 ORTHO05D005218 1.1e-42 176.8 125 71.2
SGA_v2.0_scaffold273G46436 Striga asiatica HOM05D004387 ORTHO05D005218 1.1e-42 176.8 128 68.0
Phvul.011G181200 Phaseolus vulgaris HOM05D004387 ORTHO05D005218 1.4e-42 176.4 125 69.6
arahy.Tifrunner.gnm1.ann1.02RJAW Arachis hypogaea HOM05D004387 ORTHO05D005218 3.1e-42 175.3 127 70.1
arahy.Tifrunner.gnm1.ann1.QD816I Arachis hypogaea HOM05D004387 ORTHO05D005218 4.0e-42 174.9 127 69.3
Hund05284 Selenicereus undatus HOM05D004387 ORTHO05D005218 4.0e-42 174.9 127 70.9
PGSC0003DMG400007507 Solanum tuberosum HOM05D004387 ORTHO05D005218 4.0e-42 174.9 126 71.4
Aqoxy5G00267 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 5.3e-42 174.5 126 70.6
Sopen06g031800 Solanum pennellii HOM05D004387 ORTHO05D005218 5.3e-42 174.5 125 71.2
HanXRQChr06g0178491 Helianthus annuus HOM05D004387 ORTHO05D005218 6.9e-42 174.1 127 66.9
PGR142G2016 Punica granatum HOM05D004387 ORTHO05D005218 1.2e-41 173.3 127 70.1
Psat6g037480 Pisum sativum HOM05D004387 ORTHO05D005218 1.5e-41 172.9 127 69.3
VMungo0331G1303 Vigna mungo HOM05D004387 ORTHO05D005218 2.0e-41 172.6 125 68.0
Medtr1g007060 Medicago truncatula HOM05D004387 ORTHO05D005218 3.4e-41 171.8 127 67.7
Ca_03365_v3 Cicer arietinum L. HOM05D004387 ORTHO05D005218 5.8e-41 171.0 127 67.7
HanXRQChr01g0008751 Helianthus annuus HOM05D004387 ORTHO05D005218 7.6e-41 170.6 127 64.6
TPR.G24500 Trifolium pratense HOM05D004387 ORTHO05D005218 7.6e-41 170.6 127 68.5
MSTRG.10813 Avicennia marina HOM05D004387 ORTHO05D005218 9.9e-41 170.2 127 67.7
CSS0024704 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 2.2e-40 169.1 129 70.5
Glyma.14G145600 Glycine max HOM05D004387 ORTHO05D005218 3.8e-40 168.3 125 68.0
SGA_v2.0_scaffold94G28486 Striga asiatica HOM05D004387 ORTHO05D005218 1.9e-39 166.0 127 66.1
Eucgr.A00069 Eucalyptus grandis HOM05D004387 ORTHO05D005218 5.4e-39 164.5 127 67.7
CSS0010572 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 7.1e-39 164.1 127 69.3
Aqoxy2G02875 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 9.3e-39 163.7 126 70.6
Lj6g0019382 Lotus japonicus HOM05D004387 ORTHO05D005218 9.3e-39 163.7 128 67.2
Lj4g0008518 Lotus japonicus HOM05D004387 ORTHO05D005218 1.0e-37 160.2 128 65.6
Ah.13g076470 Amaranthus hybridus HOM05D004387 ORTHO05D005218 3.9e-37 158.3 127 66.9
AT1G60080 Arabidopsis thaliana HOM05D004387 ORTHO05D005218 3.9e-37 158.3 130 64.6
CARHR052860 Cardamine hirsuta HOM05D004387 ORTHO05D005218 5.1e-37 157.9 130 65.4
PSO170G6628 Papaver somniferum HOM05D004387 ORTHO05D005218 1.1e-36 156.8 126 62.7
PSO357G0544 Papaver somniferum HOM05D004387 ORTHO05D005218 1.5e-36 156.4 126 62.7
HPP92_019752 Vanilla planifolia HOM05D004387 ORTHO05D005218 1.9e-36 156.0 127 61.4
unitig_46.g18443 Utricularia gibba HOM05D004387 ORTHO05D005218 2.5e-36 155.6 120 65.8
BcaB07g31201 Brassica carinata HOM05D004387 ORTHO05D005218 1.3e-35 153.3 129 64.3
Sp2g04520 Schrenkiella parvula HOM05D004387 ORTHO05D005218 1.3e-35 153.3 132 62.9
THA.LOC104823663 Tarenaya hassleriana HOM05D004387 ORTHO05D005218 1.3e-35 153.3 132 64.4
BcaC04g22217 Brassica carinata HOM05D004387 ORTHO05D005218 1.6e-35 152.9 129 64.3
BNapus_Darmor_BZH_scaffold_155p00060 Brassica napus HOM05D004387 ORTHO05D005218 1.6e-35 152.9 129 64.3
C09p22030 Brassica napus HOM05D004387 ORTHO05D005218 1.6e-35 152.9 129 64.3
BolC9t55109H Brassica oleracea HOM05D004387 ORTHO05D005218 1.6e-35 152.9 129 64.3
BraA09t37397Z Brassica rapa HOM05D004387 ORTHO05D005218 1.6e-35 152.9 129 64.3
AL2G16570 Arabidopsis lyrata HOM05D004387 ORTHO05D005218 2.1e-35 152.5 130 61.5
Thhalv10023611m.g Eutrema salsugineum HOM05D004387 ORTHO05D005218 2.8e-35 152.1 130 62.3
Carub.0002s0514 Capsella rubella HOM05D004387 ORTHO05D005218 3.7e-35 151.8 130 61.5
A09p17690 Brassica napus HOM05D004387 ORTHO05D005218 4.8e-35 151.4 129 63.6
Cfa006454 Carpinus fangiana HOM05D004387 ORTHO05D005218 4.0e-34 148.3 99 76.8
Aa31LG2G10160 Aethionema arabicum HOM05D004387 ORTHO05D005218 1.2e-33 146.7 129 64.3
Actinidia38546 Actinidia chinensis HOM05D004387 ORTHO05D005218 1.5e-33 146.4 99 74.7
CSS0026699 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 2.9e-32 142.1 139 59.0
EL10Ac3g07090 Beta vulgaris HOM05D004387 ORTHO05D005218 6.4e-32 141.0 99 71.7
Gorai.002G010400 Gossypium raimondii HOM05D004387 ORTHO05D005218 1.1e-31 140.2 97 74.2
SEGI_27972 Sequoiadendron giganteum HOM05D004387 ORTHO05D005218 3.2e-31 138.7 125 57.6
BcaC09g49432 Brassica carinata HOM05D004387 ORTHO05D005218 4.6e-30 134.8 135 59.3
ATR0626G351 Amborella trichopoda HOM05D004387 ORTHO05D005218 7.9e-30 134.0 128 55.5
C01p36790 Brassica napus HOM05D004387 ORTHO05D005218 7.9e-30 134.0 129 60.5
BolC1t03637H Brassica oleracea HOM05D004387 ORTHO05D005218 7.9e-30 134.0 129 60.5
Eucgr.A00266 Eucalyptus grandis HOM05D004387 ORTHO05D005218 3.0e-29 132.1 126 61.1
AUR62024448 Chenopodium quinoa HOM05D004387 ORTHO05D005218 8.7e-29 130.6 99 66.7
Os11g0311300 Oryza sativa ssp. japonica HOM05D004387 ORTHO05D005218 1.3e-27 126.7 126 50.0
CSS0027602 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 8.2e-27 124.0 89 71.9
CSS0046204 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.8e-26 122.9 127 55.9
Mapoly0071s0030 Marchantia polymorpha HOM05D004387 ORTHO05D005218 2.4e-26 122.5 128 52.3
CDE04G2438 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 3.4e-25 118.6 100 59.0
AUR62026038 Chenopodium quinoa HOM05D004387 ORTHO05D005218 3.4e-25 118.6 127 52.8
Zm00001eb175450 Zea mays HOM05D004387 ORTHO05D005218 1.3e-24 116.7 126 48.4
Pp3c19_14820 Physcomitrium patens HOM05D004387 ORTHO05D005218 1.3e-21 106.7 127 39.4
Nn2g15223 Nelumbo nucifera HOM05D004387 ORTHO05D005218 1.8e-21 106.3 127 52.8
Nitab4.5_0005483g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 1.6e-19 99.8 71 70.4
Eucgr.A00267 Eucalyptus grandis HOM05D004387 ORTHO05D005218 3.7e-19 98.6 126 47.6
SMO169G0201 Selaginella moellendorffii HOM05D004387 ORTHO05D005218 7.6e-17 90.9 120 36.7
AagrBONN_evm.TU.Sc2ySwM_362.2801 Anthoceros agrestis HOM05D004387 ORTHO05D005218 5.5e-15 84.7 115 40.9
Eucgr.A00265 Eucalyptus grandis HOM05D004387 ORTHO05D005218 2.1e-14 82.8 127 44.1
Cre10.g440900 Chlamydomonas reinhardtii HOM05D004387 ORTHO05D005218 1.9e-12 76.3 117 37.6
Eucgr.A00063 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.3e-11 73.6 98 49.0
EL10Ac3g05398 Beta vulgaris HOM05D004387 ORTHO05D005218 2.4e-10 69.3 50 66.0
MCO07G362 Micromonas commoda HOM05D004387 ORTHO05D005218 2.9e-08 62.4 123 30.1
CBR_g20981 Chara braunii HOM05D004387 ORTHO05D005218 1.1e-07 60.5 66 42.4
CBR_g41407 Chara braunii HOM05D004387 ORTHO05D005218 7.2e-07 57.8 132 31.8


User provided reference genes

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