Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 1.5e-203 712.6 362 100.0
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 3.8e-194 681.4 363 95.6
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.6e-189 666.0 367 93.7
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 3.0e-183 645.2 366 91.0
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 2.5e-161 572.4 364 78.3
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 7.2e-161 570.9 364 80.2
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 6.7e-159 564.3 363 78.8
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.8e-159 563.9 363 78.8
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 8.8e-159 563.9 363 78.5
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.5e-158 563.1 357 78.7
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 3.3e-158 562.0 362 77.9
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 3.3e-158 562.0 363 78.8
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 2.2e-157 559.3 380 74.5
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 3.7e-157 558.5 364 76.1
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 6.3e-157 557.8 363 78.0
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.4e-156 556.6 363 78.5
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 2.4e-156 555.8 363 78.2
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 4.1e-156 555.1 364 77.5
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 7.0e-156 554.3 363 78.0
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 7.0e-156 554.3 363 78.0
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 1.2e-155 553.5 363 78.0
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.6e-155 553.1 362 76.5
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 5.9e-155 551.2 362 77.1
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.2e-154 549.3 366 76.8
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 2.2e-154 549.3 385 72.2
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 5.0e-154 548.1 364 75.3
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 2.5e-153 545.8 364 75.5
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 1.6e-152 543.1 364 73.9
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 2.0e-150 536.2 374 73.5
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.3e-150 535.4 360 76.4
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 3.3e-150 535.4 364 74.7
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 2.2e-149 532.7 365 74.2
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 2.2e-149 532.7 365 75.1
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 2.8e-149 532.3 364 74.7
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 3.7e-149 531.9 367 73.6
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 3.7e-149 531.9 364 75.5
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 8.2e-149 530.8 363 73.0
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 8.2e-149 530.8 362 74.6
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 2.4e-148 529.3 362 71.0
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 7.0e-148 527.7 362 71.5
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 1.2e-147 526.9 364 73.6
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 1.6e-147 526.6 364 73.6
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 4.5e-147 525.0 363 72.2
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 2.9e-146 522.3 362 70.4
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 3.8e-146 521.9 362 70.2
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 5.0e-146 521.5 362 70.4
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 5.0e-146 521.5 362 70.7
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 2.5e-145 519.2 364 73.4
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 7.2e-145 517.7 365 74.2
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 7.2e-145 517.7 359 72.4
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 9.4e-145 517.3 364 73.4
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.2e-144 516.9 359 72.4
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.6e-144 516.5 364 73.4
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 2.1e-144 516.2 362 72.4
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 3.6e-144 515.4 362 72.4
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 8.0e-144 514.2 364 73.1
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.0e-143 513.8 364 71.7
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 1.8e-143 513.1 363 73.0
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 2.3e-143 512.7 364 72.5
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 4.0e-143 511.9 364 72.3
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 9.8e-142 507.3 364 69.8
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 8.3e-141 504.2 365 71.8
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.5e-139 498.8 337 73.0
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 1.3e-138 496.9 369 68.8
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 2.9e-138 495.7 364 70.3
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 4.2e-137 491.9 363 70.5
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.2e-136 490.3 364 71.2
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 1.6e-136 490.0 363 68.9
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 3.6e-136 488.8 364 70.3
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 6.1e-136 488.0 307 78.2
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 2.3e-135 486.1 347 70.9
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.0e-135 485.7 363 71.6
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.4e-132 476.1 367 66.8
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 4.1e-132 475.3 390 63.1
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 7.0e-132 474.6 362 67.1
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 2.7e-131 472.6 365 66.8
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 3.5e-131 472.2 362 66.9
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 7.8e-131 471.1 363 67.5
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 1.3e-130 470.3 364 67.9
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.3e-130 469.5 362 68.5
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 1.9e-129 466.5 364 67.3
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 1.9e-129 466.5 365 66.8
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 9.5e-129 464.2 364 66.8
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.6e-128 463.4 362 66.0
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 8.0e-128 461.1 318 73.3
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 1.0e-127 460.7 362 65.2
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 1.4e-127 460.3 364 66.2
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 4.0e-127 458.8 363 66.9
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 8.9e-127 457.6 389 63.0
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 8.9e-127 457.6 362 64.6
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 3.7e-125 452.2 370 64.9
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 2.4e-124 449.5 327 70.6
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 1.0e-119 434.1 367 61.3
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 3.7e-117 425.6 377 59.9
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 6.6e-114 414.8 302 71.9
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 3.3e-113 412.5 378 58.7
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 7.3e-113 411.4 363 62.5
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 6.2e-112 408.3 340 62.4
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 1.4e-111 407.1 361 59.8
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 6.8e-111 404.8 366 58.2
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 1.2e-110 404.1 277 72.9
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 7.5e-110 401.4 380 61.3
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 9.9e-110 401.0 356 59.8
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 1.4e-108 397.1 360 58.6
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 1.5e-102 377.1 387 51.2
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 9.2e-100 367.9 243 75.7
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 9.9e-94 347.8 308 56.8
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 1.2e-83 314.3 354 46.3
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 2.1e-83 313.5 348 47.1
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 1.1e-79 301.2 277 58.5
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 5.8e-78 295.4 364 50.3
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 2.2e-77 293.5 409 44.0
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 3.2e-76 289.7 215 66.0
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 5.5e-76 288.9 306 53.9
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 1.2e-70 271.2 173 79.8
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 2.1e-67 260.4 172 75.6
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.3e-66 257.7 194 67.0
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 3.9e-66 256.1 198 67.2
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 3.7e-64 249.6 212 61.8
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 5.1e-58 229.2 168 70.8
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 2.6e-54 216.9 159 69.8
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 7.2e-52 208.8 122 86.1
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.8e-50 204.1 122 84.4
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 2.0e-46 190.7 307 43.0
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.4e-46 189.9 141 71.6
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 4.5e-46 189.5 199 52.3
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 6.5e-45 185.7 165 61.8
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 1.1e-41 174.9 139 66.2
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 9.7e-41 171.8 122 74.6
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 2.2e-40 170.6 249 42.6
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 7.2e-36 155.6 141 60.3
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 9.7e-33 145.2 139 58.3
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 8.2e-32 142.1 179 41.9
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 5.3e-31 139.4 115 61.7
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.6e-27 127.9 72 84.7
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 8.8e-26 122.1 87 70.1
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 7.0e-23 112.5 383 24.8
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 4.5e-22 109.8 72 77.8
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.9e-20 104.4 77 66.2
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-17 93.6 136 37.5
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 4.6e-06 56.6 140 30.0


User provided reference genes

Program Settings