Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 0.0e+00 1996.1 1017 100.0
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 0.0e+00 1602.0 976 85.5
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 0.0e+00 1539.2 976 81.0
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 0.0e+00 1511.9 931 83.7
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 6.7e-281 971.1 999 56.2
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 1.1e-275 953.7 991 54.6
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 2.7e-274 949.1 987 54.7
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 4.4e-272 941.8 1053 53.1
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 1.2e-258 897.1 989 53.1
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 2.4e-254 882.9 973 53.4
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 1.8e-246 856.7 949 52.8
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 1.2e-245 854.0 1003 51.0
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 1.3e-244 850.5 985 51.5
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 1.9e-243 846.7 927 52.5
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 7.2e-243 844.7 965 51.2
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 2.3e-241 839.7 897 53.3
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 5.2e-241 838.6 997 51.0
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 5.2e-241 838.6 948 52.2
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 2.8e-239 832.8 859 53.7
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 4.1e-238 828.9 968 50.2
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 4.5e-237 825.5 1005 49.4
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.0e-236 824.3 864 55.0
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 9.5e-235 817.8 971 50.7
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 2.1e-234 816.6 996 48.8
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 1.8e-233 813.5 991 49.2
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 3.1e-233 812.8 982 49.8
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 5.2e-233 812.0 991 49.4
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 8.9e-233 811.2 978 50.3
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 2.9e-231 806.2 862 53.8
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 1.1e-230 804.3 969 49.3
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 9.2e-230 801.2 862 53.7
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 7.8e-229 798.1 962 49.2
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.3e-228 797.3 991 48.3
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 1.7e-228 797.0 1003 48.5
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 1.7e-228 797.0 985 48.1
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 2.3e-228 796.6 988 48.7
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 8.6e-228 794.7 1002 47.7
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 9.5e-227 791.2 997 48.8
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 4.7e-226 788.9 976 49.2
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 6.2e-226 788.5 960 50.3
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 6.2e-226 788.5 991 49.5
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 1.2e-224 784.3 998 47.5
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 3.4e-224 782.7 993 47.3
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.4e-222 776.5 971 49.5
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 2.4e-222 776.5 1000 46.9
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 3.2e-222 776.2 990 48.2
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 3.2e-222 776.2 998 47.0
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 2.1e-221 773.5 1000 48.0
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 6.0e-221 771.9 965 49.8
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 2.8e-218 763.1 1009 49.1
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 3.6e-218 762.7 995 47.6
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 4.7e-218 762.3 964 48.9
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 4.0e-217 759.2 999 46.9
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 1.2e-213 747.7 1002 47.0
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 2.7e-213 746.5 958 47.8
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 3.0e-212 743.0 882 49.5
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 3.9e-212 742.7 876 49.1
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 1.1e-211 741.1 860 50.7
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 3.3e-211 739.6 922 48.2
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 6.2e-210 735.3 961 46.6
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 8.9e-209 731.5 964 46.8
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 1.2e-208 731.1 993 46.4
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 3.8e-207 726.1 950 46.4
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 1.2e-205 721.1 1005 44.3
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 2.7e-205 719.9 892 48.8
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 7.8e-205 718.4 973 44.9
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 5.1e-204 715.7 883 47.3
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 2.5e-203 713.4 859 48.9
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 9.6e-203 711.4 738 53.8
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.8e-201 707.2 936 45.7
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 7.6e-200 701.8 969 44.6
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 1.1e-198 698.0 906 47.0
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.3e-196 691.0 962 44.4
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 3.9e-196 689.5 961 45.4
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 3.3e-195 686.4 965 45.2
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 6.2e-194 682.2 1004 44.3
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 5.3e-193 679.1 710 53.0
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 2.2e-191 673.7 957 44.0
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 2.4e-190 670.2 878 46.8
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 5.4e-190 669.1 901 46.3
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 2.5e-187 660.2 981 42.9
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 4.3e-187 659.4 963 43.4
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 5.6e-187 659.1 875 47.3
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 2.1e-186 657.1 963 43.9
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 2.9e-183 646.7 918 43.9
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 7.1e-182 642.1 879 45.2
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 2.7e-181 640.2 978 42.6
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 5.1e-180 636.0 879 44.8
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 5.1e-180 636.0 920 42.4
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 4.8e-178 629.4 1027 40.6
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 1.1e-177 628.2 739 50.1
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 1.2e-176 624.8 879 43.7
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 2.0e-176 624.0 996 40.7
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 2.6e-176 623.6 1000 41.6
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 3.8e-175 619.8 696 51.6
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 1.5e-171 607.8 692 51.0
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 1.6e-165 587.8 992 40.3
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 1.5e-160 571.2 867 42.9
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 4.5e-160 569.7 614 52.1
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 7.7e-160 568.9 609 51.7
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 1.6e-144 518.1 723 45.8
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 4.4e-131 473.4 938 36.0
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 8.3e-130 469.2 965 35.0
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 7.7e-128 462.6 483 54.2
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 1.3e-127 461.8 950 35.4
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 1.8e-121 441.4 1077 31.8
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 3.5e-120 437.2 803 38.5
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 3.2e-97 360.9 1039 29.8
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 7.6e-91 339.7 323 56.3
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 6.3e-61 240.4 929 26.9
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 3.6e-48 198.0 538 28.4
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 1.4e-41 176.0 290 42.1
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 2.5e-41 175.3 419 30.1
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 2.4e-36 158.7 252 35.3
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 2.5e-25 122.1 292 29.5
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.8e-23 115.9 251 29.5
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 2.8e-21 108.6 202 36.1
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.8e-21 108.6 185 41.6
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.0e-18 100.1 190 28.9
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.8e-15 89.4 98 48.0
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 3.0e-15 88.6 85 54.1
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 6.1e-08 64.3 104 38.5


User provided reference genes

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