Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 1.3e-220 770.0 577 100.0
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 8.8e-169 597.8 577 86.0
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 2.5e-155 553.1 577 81.3
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 1.1e-142 511.1 481 91.1
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 2.6e-120 436.8 578 66.3
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 7.3e-115 418.7 576 65.8
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 1.1e-110 404.8 578 54.5
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 3.1e-105 386.7 470 75.3
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 1.2e-104 384.8 511 58.7
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 1.7e-103 380.9 577 53.2
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 1.6e-101 374.4 581 57.8
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 3.0e-100 370.2 556 58.6
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 8.6e-100 368.6 493 55.6
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 8.4e-95 352.1 581 52.7
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 8.4e-95 352.1 470 64.5
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 1.9e-94 350.9 467 71.9
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 7.1e-94 349.0 580 47.9
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 7.1e-94 349.0 544 50.4
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 2.1e-93 347.4 563 48.1
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 4.6e-93 346.3 578 45.5
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 6.6e-92 342.4 555 53.3
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 1.9e-91 340.9 471 55.8
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 2.5e-91 340.5 470 59.6
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 2.5e-91 340.5 475 56.4
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 3.3e-91 340.1 583 54.2
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 9.6e-91 338.6 547 55.9
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 3.6e-90 336.7 472 64.8
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 3.6e-90 336.7 574 61.0
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 4.7e-90 336.3 558 49.8
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 8.1e-90 335.5 474 56.1
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.5e-88 331.3 576 60.6
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 4.2e-86 323.2 509 51.1
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 3.5e-85 320.1 573 52.5
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.0e-84 318.5 559 59.0
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 2.3e-84 317.4 574 57.3
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.0e-84 317.0 647 41.1
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 3.9e-84 316.6 553 61.7
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 5.1e-84 316.2 498 60.0
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 4.8e-82 309.7 582 49.7
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 8.1e-82 308.9 517 55.5
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 1.4e-81 308.1 490 54.3
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 2.4e-81 307.4 588 54.4
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 2.4e-81 307.4 580 50.2
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 1.2e-80 305.1 566 55.5
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 5.8e-80 302.8 534 47.9
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 2.2e-79 300.8 584 46.4
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 2.9e-79 300.4 574 55.6
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 8.4e-79 298.9 583 51.1
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 2.1e-77 294.3 578 52.8
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 2.1e-77 294.3 582 44.2
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 4.6e-77 293.1 573 52.7
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 4.6e-77 293.1 549 59.7
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 1.0e-76 292.0 576 53.0
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 3.0e-76 290.4 593 51.1
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 3.0e-76 290.4 565 52.6
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 6.7e-76 289.3 472 59.1
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 8.7e-76 288.9 579 52.3
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 1.9e-75 287.7 553 53.3
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 3.3e-75 287.0 542 54.6
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 5.6e-75 286.2 517 39.3
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 7.4e-75 285.8 544 55.1
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 9.6e-75 285.4 546 48.0
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 1.3e-74 285.0 527 54.6
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 1.6e-74 284.6 577 52.5
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 3.7e-74 283.5 576 51.7
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 1.4e-73 281.6 576 41.5
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 5.3e-73 279.6 530 47.5
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 5.3e-73 279.6 577 52.5
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 5.3e-73 279.6 575 43.1
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 2.0e-72 277.7 552 51.6
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 2.6e-72 277.3 472 48.3
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 9.9e-72 275.4 466 48.9
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 3.8e-71 273.5 574 37.3
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 8.4e-71 272.3 577 50.1
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.4e-70 271.6 530 53.4
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 1.4e-70 271.6 553 53.3
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 9.3e-70 268.9 474 58.4
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 1.2e-69 268.5 455 53.2
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 2.1e-69 267.7 624 40.5
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 2.7e-69 267.3 565 52.0
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 3.5e-69 266.9 479 44.9
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 4.6e-69 266.5 565 52.4
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 6.0e-69 266.2 534 54.3
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 1.0e-68 265.4 474 58.4
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 1.0e-68 265.4 563 55.4
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.3e-66 258.5 579 39.2
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 1.1e-65 255.4 479 48.9
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 5.3e-65 253.1 486 42.4
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 6.9e-65 252.7 555 50.3
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 6.9e-65 252.7 569 37.4
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 2.6e-64 250.8 565 48.5
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 2.2e-63 247.7 397 48.9
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 3.2e-62 243.8 455 45.9
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 5.5e-62 243.0 562 33.6
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 6.7e-60 236.1 592 43.6
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 1.9e-59 234.6 211 70.1
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 2.5e-59 234.2 170 70.6
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 1.6e-58 231.5 470 53.8
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 2.8e-58 230.7 425 49.9
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.1e-57 228.8 418 37.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 3.8e-55 220.3 475 50.7
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 3.1e-49 200.7 205 69.8
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 3.6e-45 187.2 300 58.3
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 3.0e-44 184.1 328 57.6
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 1.2e-40 172.2 506 29.8
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 3.5e-40 170.6 203 49.8
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 4.7e-37 160.2 108 75.0
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 4.5e-32 143.7 129 56.6
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 2.5e-30 137.9 118 56.8
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 2.3e-28 131.3 81 81.5
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 6.8e-28 129.8 160 44.4
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.3e-26 125.6 379 44.9
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.2e-24 119.0 402 31.1
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.6e-21 107.5 121 76.0
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 5.2e-20 103.6 70 71.4
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.4e-19 100.9 85 60.0
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 5.7e-19 100.1 59 81.4
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.8e-15 87.4 338 27.8
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 6.6e-15 86.7 156 39.1
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.2e-13 82.4 320 50.0
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 8.0e-13 79.7 136 34.6
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.0e-12 79.3 62 62.9
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 5.2e-12 77.0 159 37.1
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 8.9e-12 76.3 54 68.5
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 3.4e-11 74.3 60 60.0
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 2.2e-10 71.6 121 41.3
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.9e-10 70.5 139 29.5
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 6.3e-10 70.1 52 63.5
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.8e-09 68.6 136 30.9
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.7e-08 64.7 136 27.9


User provided reference genes

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