Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 2.0e-138 495.7 249 100.0
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 2.3e-102 375.9 253 75.5
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.3e-94 349.4 256 69.5
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.1e-94 349.0 256 68.8
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.5e-93 346.7 256 69.1
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.5e-93 346.7 256 69.1
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 2.4e-91 339.3 266 66.5
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 3.5e-90 335.5 236 72.0
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 4.6e-90 335.1 246 70.7
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 6.0e-90 334.7 254 68.9
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 6.0e-90 334.7 248 67.7
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 6.0e-90 334.7 212 76.9
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 6.0e-90 334.7 229 71.2
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.0e-89 334.0 254 70.5
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 1.3e-89 333.6 253 68.4
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.3e-89 333.6 250 68.4
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.3e-89 333.6 201 80.6
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 5.0e-89 331.6 246 68.7
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 5.0e-89 331.6 243 70.0
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 8.6e-89 330.9 251 66.1
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 8.6e-89 330.9 249 68.3
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 8.6e-89 330.9 248 69.4
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.5e-88 330.1 215 75.8
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.9e-88 329.7 250 68.8
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.9e-88 329.7 254 68.5
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 2.5e-88 329.3 256 68.0
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 3.3e-88 328.9 250 68.8
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 3.3e-88 328.9 257 65.4
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 4.3e-88 328.6 196 81.1
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 4.3e-88 328.6 197 81.2
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 5.6e-88 328.2 228 72.8
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.6e-87 326.6 249 66.3
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.6e-87 326.6 248 67.7
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 2.8e-87 325.9 263 65.4
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 4.7e-87 325.1 257 66.1
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.2e-87 324.7 252 65.9
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 8.1e-87 324.3 239 67.8
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.8e-86 323.2 193 80.8
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 2.3e-86 322.8 245 66.9
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.3e-86 322.8 258 65.5
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 2.3e-86 322.8 241 68.9
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 3.1e-86 322.4 253 65.2
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 4.0e-86 322.0 245 67.8
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 4.0e-86 322.0 255 66.7
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 4.0e-86 322.0 182 85.2
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 5.2e-86 321.6 221 71.0
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 6.8e-86 321.2 207 74.9
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 6.8e-86 321.2 248 68.1
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 8.9e-86 320.9 233 70.4
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.5e-85 320.1 248 66.1
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.6e-85 319.3 203 75.9
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 2.6e-85 319.3 254 64.2
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.4e-85 318.9 258 65.5
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 3.4e-85 318.9 253 64.4
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 5.8e-85 318.2 238 68.1
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 5.8e-85 318.2 182 84.1
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 7.5e-85 317.8 246 67.1
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 7.5e-85 317.8 257 65.0
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 7.5e-85 317.8 182 84.1
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 9.9e-85 317.4 199 77.4
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 1.3e-84 317.0 188 79.3
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.7e-84 316.6 248 66.5
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 2.2e-84 316.2 179 82.7
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 2.9e-84 315.8 250 64.4
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.9e-84 315.1 235 68.1
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 4.9e-84 315.1 248 66.9
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 4.9e-84 315.1 247 66.0
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 6.4e-84 314.7 254 64.2
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 8.3e-84 314.3 227 69.2
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 8.3e-84 314.3 199 77.9
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 1.4e-83 313.5 248 66.9
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.4e-83 313.5 190 77.9
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.4e-83 313.5 241 68.5
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 4.1e-83 312.0 231 71.4
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 9.2e-83 310.8 248 66.5
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.7e-82 309.3 209 74.6
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 4.6e-82 308.5 248 66.1
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 6.0e-82 308.1 260 63.8
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.0e-81 307.4 247 64.4
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 1.3e-81 307.0 230 68.3
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.3e-81 307.0 237 67.9
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 1.7e-81 306.6 237 67.9
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 2.3e-81 306.2 204 74.5
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 2.3e-81 306.2 204 74.5
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.0e-81 305.8 241 66.0
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.9e-81 305.4 211 73.9
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 5.1e-81 305.1 245 65.3
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 3.3e-80 302.4 184 78.3
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 5.6e-80 301.6 245 64.9
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.6e-80 301.6 205 73.7
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 7.3e-80 301.2 254 61.4
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.2e-79 300.4 190 77.4
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.2e-79 300.4 254 64.2
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.8e-78 296.6 194 73.7
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.8e-78 296.6 197 74.6
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.4e-77 292.4 193 73.6
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 3.4e-77 292.4 178 78.1
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 5.8e-77 291.6 186 74.7
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 5.8e-77 291.6 263 58.9
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 7.6e-77 291.2 160 86.9
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.7e-76 290.0 253 61.3
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 2.9e-76 289.3 193 71.5
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.9e-75 286.6 215 68.4
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 2.4e-75 286.2 227 65.2
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 5.1e-73 278.5 188 72.3
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 6.6e-73 278.1 170 80.0
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 8.7e-73 277.7 242 61.6
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 8.7e-73 277.7 204 67.2
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.1e-72 277.3 176 73.9
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.5e-72 276.2 176 73.9
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 3.3e-72 275.8 241 61.0
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 4.3e-72 275.4 241 61.0
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 7.3e-72 274.6 179 74.3
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 9.6e-72 274.2 207 67.1
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 9.6e-72 274.2 253 60.1
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.1e-71 273.1 247 59.1
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 4.7e-71 271.9 199 70.4
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 8.1e-71 271.2 223 62.3
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 1.1e-70 270.8 181 72.4
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-70 270.0 240 60.0
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 3.1e-70 269.2 240 59.2
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 3.1e-70 269.2 240 59.2
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 4.0e-70 268.9 225 60.9
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 5.2e-70 268.5 224 60.7
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 9.0e-70 267.7 246 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 2.6e-69 266.2 211 64.5
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.4e-69 265.8 223 60.5
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.4e-69 265.8 201 65.2
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.2e-68 263.1 222 60.8
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 2.9e-68 262.7 181 69.6
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 3.8e-68 262.3 255 57.6
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 3.5e-66 255.8 200 63.0
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.3e-65 253.1 250 56.4
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 3.0e-65 252.7 200 64.5
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.6e-64 248.4 173 69.4
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 6.2e-63 245.0 150 78.7
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.4e-62 243.8 143 79.7
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 3.7e-55 219.2 133 77.4
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 2.4e-54 216.5 169 65.7
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 9.0e-54 214.5 204 56.9
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.9e-51 206.8 179 64.2
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.4e-51 206.5 215 53.0
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 1.2e-50 204.1 121 78.5
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 2.3e-49 199.9 222 49.5
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-48 197.6 119 81.5
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 1.1e-46 191.0 154 64.9
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 1.4e-46 190.7 187 56.1
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 4.5e-45 185.7 221 52.0
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.4e-43 180.6 134 71.6
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 4.2e-43 179.1 187 54.5
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.6e-42 177.2 217 47.9
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.6e-42 177.2 197 51.8
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.0e-41 174.5 126 69.8
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-31 140.6 95 71.6
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.0e-28 131.3 74 79.7
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 5.0e-28 129.0 103 62.1
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.1e-27 127.9 92 70.7
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 9.4e-27 124.8 92 68.5
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.1e-22 111.3 107 53.3
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 1.8e-22 110.5 87 65.5
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 3.1e-22 109.8 125 51.2
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.6e-21 106.7 95 62.1
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 6.3e-15 85.5 202 33.2
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.8e-14 84.0 167 36.5
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.5e-12 75.5 50 70.0
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.5e-11 74.3 153 32.0
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 7.2e-11 72.0 118 41.5
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 1.4e-09 67.8 109 36.7
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.0e-08 63.9 54 61.1
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 1.3e-07 61.2 87 36.8
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 2.2e-07 60.5 54 48.1
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 1.4e-06 57.8 96 39.6
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 4.1e-06 56.2 127 30.7
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 9.1e-06 55.1 60 50.0


User provided reference genes

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