Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 6.2e-263 910.2 447 100.0
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 3.0e-217 758.4 435 85.1
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 2.6e-213 745.3 459 80.2
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 7.6e-213 743.8 454 80.0
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 5.0e-212 741.1 451 80.5
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 1.9e-211 739.2 451 80.0
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 4.2e-211 738.0 451 78.9
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 2.1e-210 735.7 451 77.2
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 2.1e-210 735.7 451 79.4
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 1.1e-208 729.9 451 79.4
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 2.5e-208 728.8 459 77.3
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 3.3e-208 728.4 434 80.6
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 7.4e-208 727.2 454 77.8
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 9.7e-208 726.9 451 79.2
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 9.7e-208 726.9 451 78.7
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.7e-207 726.1 451 78.7
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 2.2e-207 725.7 451 78.9
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 3.7e-207 724.9 454 78.0
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 6.3e-207 724.2 451 78.0
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 6.3e-207 724.2 451 78.0
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 8.2e-207 723.8 459 77.1
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.4e-206 723.0 451 78.0
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 3.4e-205 718.4 486 73.5
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 4.2e-203 711.4 451 76.5
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 4.2e-203 711.4 458 76.4
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 3.6e-202 708.4 451 78.0
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 6.1e-202 707.6 459 75.2
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 4.4e-200 701.4 454 76.2
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.8e-198 696.0 435 77.2
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 3.4e-197 691.8 450 74.7
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 7.7e-197 690.6 450 74.7
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 1.7e-196 689.5 450 73.3
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 5.5e-195 684.5 451 74.7
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 7.2e-195 684.1 447 72.9
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 7.2e-195 684.1 430 75.6
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 1.0e-193 680.2 456 73.2
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 3.0e-193 678.7 458 73.8
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 6.7e-193 677.6 446 73.3
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 2.0e-192 676.0 445 72.8
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 2.0e-192 676.0 447 72.5
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 4.4e-192 674.9 457 71.3
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 7.4e-192 674.1 453 72.0
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 7.4e-192 674.1 451 73.4
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 7.4e-192 674.1 447 75.6
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 9.7e-192 673.7 444 73.2
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 8.2e-191 670.6 447 72.3
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 8.2e-191 670.6 413 79.4
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 8.2e-191 670.6 447 71.6
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 1.4e-190 669.8 458 71.0
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 1.4e-190 669.8 446 72.4
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 1.8e-190 669.5 455 72.5
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 3.1e-190 668.7 455 72.3
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 4.1e-190 668.3 456 72.4
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 4.1e-190 668.3 457 71.8
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 9.1e-190 667.2 457 71.3
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 3.5e-189 665.2 402 81.8
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 7.7e-189 664.1 455 71.2
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 1.7e-188 662.9 458 71.0
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 6.5e-188 661.0 449 71.7
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 6.5e-188 661.0 446 71.5
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 1.1e-187 660.2 456 72.1
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 3.2e-187 658.7 455 71.2
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 1.0e-185 653.7 455 70.1
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 2.3e-185 652.5 457 70.2
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 3.0e-185 652.1 455 69.9
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 6.7e-185 651.0 431 73.1
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 1.5e-184 649.8 418 76.6
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 2.0e-184 649.4 448 71.0
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 7.5e-184 647.5 456 71.5
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 6.3e-183 644.4 456 69.1
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 9.1e-182 640.6 454 69.8
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 3.5e-181 638.6 457 68.7
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 4.5e-181 638.3 453 70.4
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 1.3e-180 636.7 511 63.4
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 1.7e-180 636.3 451 69.8
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 8.5e-180 634.0 454 68.7
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 1.4e-177 626.7 454 68.7
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 1.5e-176 623.2 457 69.1
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 9.8e-176 620.5 383 79.9
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 1.4e-174 616.7 411 73.7
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 4.1e-174 615.1 455 68.6
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 5.4e-174 614.8 454 67.2
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 9.1e-174 614.0 455 67.9
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 4.5e-173 611.7 436 71.3
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 5.9e-173 611.3 454 67.0
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 2.3e-172 609.4 385 77.7
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 1.1e-171 607.1 454 67.0
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 1.6e-170 603.2 488 64.5
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 1.8e-169 599.7 454 65.0
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 1.2e-168 597.0 455 65.5
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 1.7e-167 593.2 414 71.0
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 3.7e-167 592.0 453 65.1
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 8.6e-164 580.9 450 64.9
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 1.2e-162 577.0 454 63.4
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 4.1e-158 562.0 432 66.2
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 2.4e-150 536.2 372 71.8
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 3.1e-137 492.7 371 67.4
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 9.0e-129 464.5 458 49.3
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 5.8e-128 461.8 459 56.4
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 4.9e-127 458.8 462 49.8
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.2e-125 454.1 334 67.1
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 3.5e-117 426.0 451 47.9
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 4.6e-117 425.6 294 72.1
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.5e-115 420.6 452 45.8
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 1.6e-114 417.2 308 68.2
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 6.3e-98 362.1 514 39.3
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 5.3e-97 359.0 376 49.7
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 3.2e-86 323.2 459 39.7
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 8.8e-84 315.1 242 67.8
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 1.3e-74 284.6 207 64.7
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.8e-74 283.5 221 58.8
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 4.0e-68 263.1 436 36.0
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 3.7e-66 256.5 191 64.9
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 1.5e-38 164.9 441 27.7
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 9.5e-38 162.2 286 35.3
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 1.4e-36 158.3 107 69.2
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.4e-20 105.1 124 38.7
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 1.3e-10 72.0 329 22.8
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 1.1e-09 68.9 324 22.5
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 7.1e-09 66.2 353 23.2
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 7.1e-09 66.2 323 20.4
Peaxi162Scf00527g00063 Petunia axillaris HOM05D002303 ORTHO05D006504 3.5e-08 63.9 303 23.1
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 3.5e-08 63.9 337 21.7
Solyc02g078970.4 Solanum lycopersicum HOM05D002303 ORTHO05D006504 4.6e-08 63.5 180 25.0
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 6.0e-08 63.2 266 23.7
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 6.0e-08 63.2 266 23.7
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 1.0e-07 62.4 178 25.3
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 2.3e-07 61.2 126 27.0
Nitab4.5_0001170g0230 Nicotiana tabacum HOM05D002303 ORTHO05D006504 2.3e-07 61.2 180 24.4
Nitab4.5_0003676g0010 Nicotiana tabacum HOM05D002303 ORTHO05D006504 2.3e-07 61.2 180 24.4
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 3.0e-07 60.8 126 26.2
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 3.0e-07 60.8 359 20.6
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 6.6e-07 59.7 214 23.8
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 8.7e-07 59.3 126 26.2
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 1.1e-06 58.9 126 27.0
Cpa.g.c29144.2 Carica papaya HOM05D000836 ORTHO05D000709 1.5e-06 58.5 311 19.3
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 1.9e-06 58.2 214 25.7
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 2.5e-06 57.8 122 25.4
TAR383G0657 Trochodendron aralioides HOM05D003006 ORTHO05D003438 2.5e-06 57.8 228 25.0
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 3.3e-06 57.4 128 28.1
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 3.3e-06 57.4 256 22.7
THA.LOC104821692 Tarenaya hassleriana HOM05D000792 ORTHO05D004195 3.3e-06 57.4 252 22.2
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 4.3e-06 57.0 146 24.0
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 4.3e-06 57.0 314 21.7
SMO228G0026 Selaginella moellendorffii HOM05D003769 ORTHO05D004521 4.3e-06 57.0 122 27.0
CiPaw.02G099700 Carya illinoinensis HOM05D005323 ORTHO05D006820 5.6e-06 56.6 120 31.7
EL10Ac4g09219 Beta vulgaris HOM05D000792 ORTHO05D004195 7.3e-06 56.2 225 22.7
Lalb_Chr17g0347231 Lupinus albus HOM05D000684 ORTHO05D000688 7.3e-06 56.2 123 30.1
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 7.3e-06 56.2 121 24.8
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 7.3e-06 56.2 329 20.4
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 7.3e-06 56.2 329 20.4
Cre02.g085050 Chlamydomonas reinhardtii HOM05D000684 ORTHO05D000688 9.6e-06 55.8 145 26.2
FvH4_3g01260 Fragaria vesca HOM05D000684 ORTHO05D000688 9.6e-06 55.8 153 26.8
Sopen02g023780 Solanum pennellii HOM05D002303 ORTHO05D006504 9.6e-06 55.8 180 22.8
PGSC0003DMG400022364 Solanum tuberosum HOM05D002303 ORTHO05D006504 9.6e-06 55.8 180 22.8


User provided reference genes

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