Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1328.9 649 100.0
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1257.7 645 95.0
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1256.5 649 94.5
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1242.6 647 92.0
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1241.9 647 91.8
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1236.9 647 91.3
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1230.3 647 91.3
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1229.5 647 91.2
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1229.5 647 91.2
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1223.0 649 90.6
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1218.8 647 90.1
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1218.0 647 90.1
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1216.8 650 91.2
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1215.3 647 89.8
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1215.3 647 89.5
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1214.5 647 89.5
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1214.1 647 90.0
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1213.0 650 89.8
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1212.6 647 90.0
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1212.6 650 89.8
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1210.3 650 89.7
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1210.3 650 90.0
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1210.3 647 90.1
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1210.3 650 91.1
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1209.9 647 89.2
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1209.5 647 90.1
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1208.4 644 90.4
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1207.6 647 89.8
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1207.6 647 89.6
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1207.2 648 88.7
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1206.4 649 89.1
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1206.0 650 89.4
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1205.3 645 89.8
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1200.7 649 88.4
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1200.7 641 90.2
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1199.9 649 88.6
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1197.6 649 88.6
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1195.6 647 88.7
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1194.9 647 88.6
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1194.5 648 88.1
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 645 88.7
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1189.9 645 88.7
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1189.5 645 88.5
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1187.6 646 88.7
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1185.2 645 87.4
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1184.9 649 88.1
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1184.9 649 87.5
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1184.1 645 87.6
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 648 87.3
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 643 88.8
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 648 87.5
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 645 87.1
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 647 88.1
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1179.1 649 87.2
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 639 88.6
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 646 87.3
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 645 87.3
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1176.0 645 87.0
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1176.0 649 86.1
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1174.1 645 87.9
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1174.1 646 87.2
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 647 86.2
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 647 86.9
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1172.1 650 88.5
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1169.8 642 87.2
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 651 88.3
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 649 85.4
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1168.7 648 86.0
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1167.9 648 86.3
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1167.9 648 86.4
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1167.1 647 86.2
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1166.8 649 85.7
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1166.8 645 87.1
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1164.4 649 84.9
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 645 89.6
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1162.9 647 85.9
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 649 86.1
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 648 85.8
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1162.1 641 87.1
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1158.3 646 86.1
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1156.7 647 85.6
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1155.6 651 85.4
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1155.6 651 85.4
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 651 85.6
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1154.0 646 85.0
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 651 85.4
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 646 85.0
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 646 85.1
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1151.3 651 85.1
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1150.6 630 87.9
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1150.2 647 86.2
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1148.3 645 83.9
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1148.3 645 83.9
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1147.1 646 85.3
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1141.7 652 85.4
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1139.0 717 77.7
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1139.0 645 83.4
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1121.7 594 90.7
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1111.7 581 90.4
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1109.0 641 82.5
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1104.4 641 82.1
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1097.0 651 81.1
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1089.3 645 80.6
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 0.0e+00 1082.4 648 81.6
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 0.0e+00 1077.8 671 78.5
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 5.9e-307 1057.0 613 85.8
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 1.7e-301 1038.9 543 90.1
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 7.0e-300 1033.5 589 83.5
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 1.0e-298 1029.6 631 78.9
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 6.6e-298 1026.9 599 81.5
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 9.5e-297 1023.1 601 80.9
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 3.6e-288 994.6 604 77.8
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 6.8e-287 990.3 556 82.6
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 4.2e-252 874.8 472 87.7
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 1.1e-228 797.0 513 74.1
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 1.2e-201 707.2 424 83.5
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 2.1e-195 686.4 394 82.2
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 2.0e-190 669.8 581 59.2
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 3.0e-149 533.1 267 94.8
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 5.1e-125 452.6 588 45.4
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 5.4e-74 283.1 225 63.1
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 8.0e-70 269.2 125 97.6
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 1.2e-44 185.7 104 83.7
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 9.9e-44 182.6 151 61.6
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 5.4e-42 176.8 95 92.6
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 8.1e-38 162.9 150 60.0
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 4.5e-20 104.0 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 4.9e-19 100.5 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 7.9e-09 66.6 32 96.9


User provided reference genes

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