Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 8.6e-134 480.3 244 100.0
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 2.4e-115 419.1 242 88.0
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.6e-111 406.4 240 84.2
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 3.5e-111 405.2 241 84.2
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 2.3e-110 402.5 240 82.9
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 2.3e-110 402.5 240 82.9
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 3.0e-110 402.1 239 83.3
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 5.1e-110 401.4 240 82.9
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 5.1e-110 401.4 240 83.3
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 1.1e-109 400.2 233 86.7
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.5e-109 399.8 242 82.6
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.9e-109 399.4 240 82.1
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 2.5e-109 399.1 240 82.5
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 7.3e-109 397.5 240 82.1
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 9.6e-109 397.1 240 81.7
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 1.3e-108 396.7 237 83.5
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 2.8e-108 395.6 240 82.1
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 4.8e-108 394.8 240 81.7
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 4.8e-108 394.8 235 84.7
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 6.2e-108 394.4 239 82.4
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 1.1e-107 393.7 239 82.8
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 1.8e-107 392.9 240 81.7
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.8e-107 392.9 240 81.2
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 1.8e-107 392.9 240 81.2
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.8e-107 392.9 342 63.5
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 3.1e-107 392.1 244 81.6
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 3.1e-107 392.1 240 81.7
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 3.1e-107 392.1 240 81.2
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 5.3e-107 391.3 240 81.2
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 1.2e-106 390.2 240 80.8
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 2.6e-106 389.0 240 80.8
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 5.8e-106 387.9 234 81.6
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 5.8e-106 387.9 242 81.4
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 2.2e-105 386.0 240 80.4
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 3.8e-105 385.2 273 74.0
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 8.4e-105 384.0 244 79.9
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 1.4e-104 383.3 242 80.6
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 1.2e-103 380.2 240 78.3
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.6e-103 379.8 240 77.5
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 2.1e-103 379.4 235 80.4
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 2.1e-103 379.4 239 79.1
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 2.7e-103 379.0 239 79.1
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 2.7e-103 379.0 232 79.3
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.6e-103 378.3 236 80.5
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.6e-103 378.3 236 80.5
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 6.0e-103 377.9 240 77.9
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 3.9e-102 375.2 232 81.5
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 6.7e-102 374.4 242 80.6
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 8.7e-102 374.0 239 77.8
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 8.7e-102 374.0 221 84.2
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 8.7e-102 374.0 244 77.9
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.5e-101 373.2 240 80.0
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 2.5e-101 372.5 239 78.2
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 2.5e-101 372.5 241 78.0
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.4e-101 370.9 232 81.0
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 7.4e-101 370.9 240 77.5
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.1e-100 369.4 232 80.2
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 2.1e-100 369.4 239 76.6
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.8e-100 369.0 239 77.8
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.8e-100 369.0 232 80.2
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 2.8e-100 369.0 248 74.2
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 4.8e-100 368.2 231 80.1
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 4.8e-100 368.2 232 78.9
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.1e-99 367.1 232 79.7
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.8e-99 366.3 212 87.3
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.8e-99 366.3 233 78.1
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.4e-99 365.9 240 78.3
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 2.4e-99 365.9 239 76.2
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 4.0e-99 365.2 231 79.2
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 4.0e-99 365.2 240 76.7
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 6.9e-99 364.4 239 78.7
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.2e-98 363.6 233 77.3
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.5e-98 363.2 236 78.4
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 4.5e-98 361.7 239 77.0
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 4.5e-98 361.7 239 77.0
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 4.5e-98 361.7 239 77.0
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 7.6e-98 360.9 236 77.1
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 9.9e-98 360.5 240 75.8
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 9.9e-98 360.5 259 71.0
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.2e-97 359.4 240 75.4
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 3.8e-97 358.6 212 84.4
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.4e-96 356.7 239 76.2
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 4.2e-96 355.1 243 77.4
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.2e-95 353.6 232 75.9
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.6e-95 353.2 242 74.8
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 2.7e-95 352.4 239 73.6
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 2.7e-95 352.4 208 83.7
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 6.0e-95 351.3 239 73.2
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 6.0e-95 351.3 240 73.8
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 1.0e-94 350.5 239 72.8
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 3.0e-94 349.0 239 74.9
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.5e-93 346.7 227 76.2
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.5e-93 346.7 244 74.2
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 4.3e-93 345.1 232 76.3
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 4.3e-93 345.1 240 72.5
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 7.4e-93 344.4 265 67.9
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.1e-92 342.8 239 72.0
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.2e-92 341.3 287 64.1
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.4e-91 340.1 211 81.0
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.0e-89 334.0 195 85.1
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 8.4e-89 330.9 283 61.8
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.1e-88 330.5 202 80.2
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 5.1e-86 321.6 209 75.6
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.5e-85 320.1 213 74.6
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 2.2e-84 316.2 198 79.8
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.7e-81 306.6 239 67.8
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 3.2e-80 302.4 189 79.9
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.5e-77 293.5 176 80.7
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 8.5e-73 277.7 170 80.0
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 1.4e-72 276.9 239 56.1
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.4e-72 276.9 227 61.2
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 6.1e-71 271.6 167 79.0
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 2.4e-67 259.6 227 56.4
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.4e-64 250.4 146 84.9
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 5.7e-61 238.4 145 77.9
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.5e-56 223.0 140 78.6
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.5e-56 223.0 140 78.6
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.8e-54 216.9 122 92.6
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 4.0e-54 215.7 122 91.8
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 6.7e-54 214.9 192 56.8
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 6.7e-54 214.9 135 77.8
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 7.5e-53 211.5 125 80.0
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 4.5e-50 202.2 120 83.3
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 2.9e-49 199.5 225 47.1
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.8e-49 199.1 126 80.2
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 3.8e-49 199.1 182 60.4
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 8.5e-49 198.0 131 73.3
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.5e-48 197.2 169 62.7
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 4.4e-45 185.7 119 76.5
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 5.9e-42 175.3 235 44.3
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.0e-38 164.5 128 69.5
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 2.8e-36 156.4 120 69.2
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 1.3e-33 147.5 130 61.5
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.9e-32 143.7 100 74.0
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.4e-30 137.5 121 62.8
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 2.6e-29 133.3 183 43.7
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 2.2e-28 130.2 85 70.6
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 9.2e-27 124.8 239 36.0
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 3.5e-26 122.9 81 75.3
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.0e-25 121.3 106 60.4
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.7e-25 120.6 107 66.4
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 2.3e-25 120.2 91 65.9
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.0e-25 119.8 152 40.8
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.5e-24 117.5 89 65.2
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.2e-21 107.8 71 76.1
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 1.1e-19 101.3 184 33.7
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.4e-19 99.0 54 87.0
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 8.6e-17 91.7 51 82.4
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 3.3e-16 89.7 165 41.2
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.6e-15 86.3 62 66.1
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 2.3e-09 67.0 37 81.1
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 2.1e-07 60.5 33 75.8


User provided reference genes

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