Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 0.0e+00 1230.3 665 100.0
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 1.6e-262 909.4 664 71.7
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.2e-257 893.3 665 75.5
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 1.1e-242 843.6 728 67.9
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 3.0e-229 798.9 665 63.0
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 9.3e-223 777.3 665 62.6
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 4.8e-219 765.0 662 61.3
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 3.0e-213 745.7 720 57.6
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 3.0e-213 745.7 736 55.8
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 1.5e-209 733.4 665 63.0
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 2.6e-209 732.6 667 60.9
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 2.2e-208 729.6 713 56.5
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 1.0e-205 720.7 670 57.9
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 1.5e-204 716.8 708 56.1
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 1.5e-204 716.8 698 56.9
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 4.3e-204 715.3 710 56.6
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 1.3e-203 713.8 710 55.9
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 3.7e-203 712.2 677 58.3
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 1.2e-201 707.2 711 54.7
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 1.5e-201 706.8 711 55.1
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 1.5e-201 706.8 668 56.6
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 2.6e-201 706.1 668 58.2
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 3.4e-201 705.7 666 63.2
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 4.5e-201 705.3 714 54.2
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 1.7e-200 703.4 706 54.1
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 2.2e-200 703.0 697 57.1
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 2.2e-200 703.0 708 54.5
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 1.4e-199 700.3 714 55.3
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.2e-199 699.1 673 57.4
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 2.7e-198 696.0 719 54.0
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 6.1e-198 694.9 671 57.4
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.0e-197 694.1 715 55.7
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 2.3e-197 693.0 705 53.9
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 6.3e-195 684.9 728 54.8
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.1e-194 684.1 717 53.7
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 1.4e-194 683.7 672 57.0
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 9.1e-194 681.0 710 52.8
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 3.4e-193 679.1 716 54.1
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 5.0e-192 675.2 639 56.7
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 8.5e-192 674.5 711 52.9
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 8.5e-192 674.5 663 57.0
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 6.1e-190 668.3 675 57.3
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 3.1e-186 656.0 673 55.6
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 4.1e-186 655.6 671 54.5
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.3e-184 650.6 671 55.6
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 3.8e-184 649.0 674 55.5
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 6.5e-184 648.3 728 52.7
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 7.2e-183 644.8 673 55.0
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.2e-182 644.0 676 55.5
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 2.7e-182 642.9 766 49.0
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 6.1e-182 641.7 714 51.0
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 8.0e-182 641.3 674 54.5
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 2.3e-181 639.8 665 54.1
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 2.6e-180 636.3 671 52.6
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 3.7e-179 632.5 724 51.4
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 3.7e-179 632.5 668 54.0
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 8.2e-179 631.3 759 49.0
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.2e-177 627.5 735 51.2
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 3.5e-177 625.9 730 48.9
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 7.7e-177 624.8 730 49.9
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.3e-176 624.0 668 52.2
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 5.0e-176 622.1 673 52.3
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 6.5e-176 621.7 767 48.6
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 2.5e-175 619.8 669 52.2
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 3.2e-175 619.4 796 46.9
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.4e-173 614.0 730 50.7
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 5.2e-173 612.1 730 50.7
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 3.3e-172 609.4 713 49.2
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 4.4e-172 609.0 675 53.6
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 1.3e-171 607.4 718 49.2
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 7.0e-170 601.7 703 49.4
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 3.5e-169 599.4 664 51.2
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 2.9e-168 596.3 673 52.2
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 8.5e-168 594.7 578 55.7
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 1.9e-167 593.6 671 51.4
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.8e-162 577.0 730 48.6
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 2.4e-162 576.6 668 50.6
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 1.7e-155 553.9 735 45.4
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 1.7e-155 553.9 736 46.5
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.5e-151 540.8 705 48.1
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 9.5e-151 538.1 715 46.4
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 2.1e-150 537.0 735 45.3
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 8.0e-150 535.0 615 50.7
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.8e-149 533.9 730 45.3
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 3.2e-146 523.1 681 49.2
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 5.4e-146 522.3 764 43.3
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.0e-144 518.1 760 47.6
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 8.6e-144 515.0 666 47.0
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 4.0e-141 506.1 659 46.6
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 3.4e-140 503.1 636 53.5
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.9e-138 497.3 709 45.6
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.2e-137 494.6 694 44.5
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 7.8e-137 491.9 655 45.0
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 2.3e-136 490.3 860 39.4
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 6.8e-133 478.8 481 56.1
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 1.1e-127 461.5 830 38.8
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 1.2e-126 458.0 833 38.4
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 4.0e-125 453.0 507 51.7
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 2.0e-124 450.7 859 37.4
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 7.6e-124 448.7 852 37.4
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 1.6e-118 431.0 664 41.6
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 1.7e-112 411.0 828 37.0
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 9.0e-101 372.1 733 36.8
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 3.8e-99 366.7 654 38.7
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 3.0e-96 357.1 696 36.6
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 6.7e-96 355.9 675 37.6
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 4.8e-94 349.7 675 37.3
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 6.1e-89 332.8 670 40.3
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 4.5e-84 316.6 256 64.5
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 2.6e-76 290.8 645 36.3
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 1.0e-72 278.9 623 35.2
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.5e-71 275.0 342 46.5
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 8.5e-67 259.2 724 29.0
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.7e-62 243.8 277 48.4
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 5.3e-61 240.0 694 28.5
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 4.2e-58 230.3 196 57.7
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 1.4e-56 225.3 918 26.7
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 3.0e-56 224.2 321 44.5
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 2.5e-50 204.5 669 29.3
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 5.0e-43 180.3 176 52.8
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 5.0e-43 180.3 176 52.8
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 1.2e-41 175.6 128 68.8
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 4.9e-38 163.7 136 66.9
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 1.7e-35 155.2 326 32.5
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.1e-34 152.5 186 45.2
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.5e-34 152.1 82 92.7
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 4.9e-30 137.1 243 39.5
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.9e-22 111.3 103 54.4
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 6.6e-19 100.1 96 54.2
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 5.8e-15 87.0 110 43.6
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 1.9e-13 82.0 100 45.0
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.6e-12 79.0 188 33.5
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 1.2e-09 69.3 54 64.8
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 3.1e-08 64.7 114 41.2


User provided reference genes

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