Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 7.6e-173 611.3 573 100.0
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 1.5e-128 464.2 403 69.2
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 2.4e-126 456.8 409 74.3
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 7.7e-117 425.2 406 73.6
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 3.2e-115 419.9 420 70.7
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 8.0e-114 415.2 406 71.4
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 2.0e-112 410.6 406 71.4
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 3.4e-112 409.8 409 69.9
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 4.4e-112 409.5 583 75.8
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 9.8e-112 408.3 409 68.9
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 2.8e-111 406.8 409 69.2
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 1.1e-110 404.8 328 75.9
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 3.1e-110 403.3 413 70.2
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 5.4e-110 402.5 591 75.0
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 2.0e-109 400.6 428 64.3
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 3.8e-108 396.4 401 66.3
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 5.0e-108 396.0 401 67.3
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 8.6e-108 395.2 576 74.8
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 8.6e-108 395.2 497 81.9
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 1.1e-107 394.8 401 67.1
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 4.2e-107 392.9 403 67.7
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 5.5e-107 392.5 328 75.0
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 9.5e-107 391.7 403 66.7
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 1.2e-106 391.3 586 74.2
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 1.6e-106 391.0 403 65.8
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 2.1e-106 390.6 501 81.6
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 3.6e-106 389.8 561 76.8
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 8.0e-106 388.7 424 65.8
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 1.4e-105 387.9 500 77.4
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 5.2e-105 386.0 578 73.4
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 8.9e-105 385.2 421 65.8
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 5.7e-104 382.5 403 71.0
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 7.5e-104 382.1 328 73.8
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 1.3e-103 381.3 421 65.8
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 6.3e-103 379.0 400 68.5
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 1.8e-102 377.5 576 77.1
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 4.1e-102 376.3 502 78.1
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 5.4e-102 375.9 578 71.3
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 7.0e-102 375.6 328 72.6
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 1.2e-101 374.8 400 66.8
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 1.6e-101 374.4 326 72.1
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 2.0e-101 374.0 395 63.5
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 2.0e-101 374.0 398 66.8
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 4.5e-101 372.9 403 66.3
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 5.9e-101 372.5 584 67.0
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 1.0e-100 371.7 409 66.0
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 3.8e-100 369.8 402 56.5
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 1.2e-98 364.8 495 76.8
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 2.1e-98 364.0 411 63.3
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 2.8e-98 363.6 597 53.4
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 2.8e-98 363.6 408 67.9
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 2.8e-98 363.6 413 64.6
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 3.0e-97 360.1 497 76.1
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 4.0e-97 359.8 327 71.3
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 6.8e-97 359.0 415 61.4
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 3.7e-95 353.2 419 60.9
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 4.1e-94 349.7 580 69.7
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 5.4e-94 349.4 409 64.1
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 7.0e-94 349.0 497 76.1
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 1.6e-93 347.8 324 67.0
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 2.0e-93 347.4 416 57.0
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 6.0e-93 345.9 478 78.5
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 3.9e-92 343.2 501 75.0
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 1.5e-91 341.3 471 77.3
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 4.3e-91 339.7 326 66.9
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 2.1e-90 337.4 259 69.5
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 1.4e-89 334.7 363 57.9
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 5.8e-88 329.3 414 59.9
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 2.2e-87 327.4 493 71.6
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 2.4e-86 323.9 457 73.5
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 7.0e-86 322.4 589 66.9
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 3.5e-85 320.1 457 77.5
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 1.7e-84 317.8 296 61.1
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 2.3e-84 317.4 326 64.4
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 3.0e-84 317.0 327 63.3
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 3.9e-84 316.6 323 63.8
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 1.1e-83 315.1 401 58.1
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 3.3e-83 313.5 326 63.5
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 1.2e-82 311.6 325 62.5
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 3.6e-82 310.1 286 58.7
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 3.6e-82 310.1 359 55.2
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 1.1e-81 308.5 323 62.5
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 1.1e-81 308.5 323 62.5
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 1.4e-81 308.1 323 62.5
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 1.4e-81 308.1 323 62.5
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 1.4e-81 308.1 314 65.3
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 2.3e-81 307.4 325 61.5
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 3.1e-81 307.0 291 66.0
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 4.0e-81 306.6 573 61.1
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 8.9e-81 305.4 325 61.5
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 1.5e-80 304.7 400 59.5
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 2.0e-80 304.3 323 61.9
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 5.8e-80 302.8 334 59.6
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 1.3e-79 301.6 312 57.1
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 1.9e-78 297.7 315 63.2
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 1.9e-78 297.7 405 60.0
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 4.1e-78 296.6 253 65.2
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 3.5e-77 293.5 294 65.6
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.5e-77 293.5 276 61.6
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 1.7e-76 291.2 294 65.0
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 1.7e-76 291.2 294 65.0
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 2.3e-76 290.8 276 61.2
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 3.0e-76 290.4 304 63.8
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 8.6e-76 288.9 304 63.2
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.1e-75 288.5 276 59.8
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 4.3e-75 286.6 304 63.2
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.7e-74 283.1 273 60.4
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.1e-73 280.4 252 61.9
RcHm_v2.0_Chr3g0484331 Rosa chinensis HOM05D003639 ORTHO05D004246 8.9e-73 278.9 231 65.8
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 9.9e-72 275.4 388 46.1
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 1.7e-71 274.6 313 63.3
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 3.8e-71 273.5 311 62.7
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 5.4e-70 269.6 304 61.8
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.3e-68 265.0 228 75.0
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 5.8e-64 249.6 304 58.6
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 2.9e-63 247.3 340 47.1
Cc06_g18350 Coffea canephora HOM05D003639 ORTHO05D004246 7.1e-62 242.7 386 81.3
GSVIVG01033551001 Vitis vinifera HOM05D003639 ORTHO05D004246 7.8e-61 239.2 213 73.7
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 1.3e-60 238.4 289 49.1
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 1.7e-60 238.0 309 48.2
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 3.6e-58 230.3 300 46.3
VMungo0540G1675 Vigna mungo HOM05D003639 ORTHO05D004246 2.9e-55 220.7 183 62.3
Psat6g118240 Pisum sativum HOM05D003639 ORTHO05D004246 4.9e-55 219.9 329 54.4
MD14G1080500 Malus domestica HOM05D003639 ORTHO05D004246 6.4e-55 219.5 194 58.2
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 6.4e-55 219.5 182 62.1
Mapoly0014s0154 Marchantia polymorpha HOM05D003639 ORTHO05D004246 9.0e-49 199.1 270 45.6
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 7.1e-46 189.5 246 48.0
FAN14G5922 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.0e-44 185.7 183 61.7
FAN19G1783 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.0e-44 185.7 183 61.7
FAN03G0195 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.0e-44 184.1 183 61.2
FAN07G1748 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.0e-44 184.1 183 61.2
FAN10G2664 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.0e-44 184.1 183 61.2
FAN23G2202 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.0e-44 184.1 183 61.2
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 3.0e-44 184.1 325 45.8
Sed0000547 Sechium edule HOM05D003639 ORTHO05D004246 3.9e-44 183.7 158 62.0
FAN17G3014 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.1e-44 183.3 183 61.2
FAN01G0512 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.7e-44 183.0 183 61.2
FAN28G1931 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.7e-44 182.6 183 61.2
FAN06G0994 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.1e-43 182.2 183 60.7
FAN24G0290 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.5e-43 181.8 183 59.6
BcaB06g29187 Brassica carinata HOM05D003639 ORTHO05D004246 3.3e-43 180.6 187 67.4
FAN22G1757 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.4e-43 179.5 183 60.1
Medtr0012s0110 Medicago truncatula HOM05D003639 ORTHO05D004246 9.6e-43 179.1 136 72.1
FAN27G3180 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.1e-42 177.9 183 60.1
FAN13G2401 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.7e-42 177.2 161 62.7
FAN09G4382 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.8e-41 174.9 186 57.5
BcaNung04072 Brassica carinata HOM05D003639 ORTHO05D004246 2.0e-40 171.4 153 58.8
FAN16G0989 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.9e-39 166.8 183 57.9
Atru.chr6.1378 Acer truncatum HOM05D003639 ORTHO05D004246 3.3e-35 154.1 198 57.6
MELO3C019779.2 Cucumis melo HOM05D003639 ORTHO05D004246 1.1e-33 149.1 182 49.5
BolC5t34692H Brassica oleracea HOM05D003639 ORTHO05D004246 3.1e-33 147.5 153 56.2
FAN25G1774 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.7e-32 142.9 183 51.4
RcHm_v2.0_Chr3g0484501 Rosa chinensis HOM05D003639 ORTHO05D004246 3.8e-31 140.6 147 52.4
FAN17G0086 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.1e-29 133.3 144 60.4
Atru.chr6.1379 Acer truncatum HOM05D003639 ORTHO05D004246 2.0e-27 128.3 78 75.6
AT2G05720 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 3.3e-27 127.5 142 50.0
RcHm_v2.0_Chr3g0484401 Rosa chinensis HOM05D003639 ORTHO05D004246 5.7e-27 126.7 105 62.9
MELO3C019777.2 Cucumis melo HOM05D003639 ORTHO05D004246 3.1e-25 120.9 160 48.8
MCO12G002 Micromonas commoda HOM05D003639 ORTHO05D004246 3.1e-25 120.9 296 33.1
Psat4g106880 Pisum sativum HOM05D003639 ORTHO05D004246 4.7e-21 107.1 119 55.5
Atru.chr1.1192 Acer truncatum HOM05D003639 ORTHO05D004246 8.2e-18 96.3 93 87.1
Lj4A34T49 Lonicera japonica HOM05D003639 ORTHO05D004246 2.4e-17 94.7 266 91.0
TAR065G0002 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.0e-15 89.4 154 55.8
Atru.chr6.1380 Acer truncatum HOM05D003639 ORTHO05D004246 1.7e-15 88.6 93 49.5
AL3G43260 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 1.9e-14 85.1 83 55.4
Cfa024100 Carpinus fangiana HOM05D003639 ORTHO05D004246 5.5e-14 83.6 243 28.4
QL04p089213 Quercus lobata HOM05D003639 ORTHO05D004246 7.2e-14 83.2 112 51.8
Cre16.g662800 Chlamydomonas reinhardtii HOM05D003639 ORTHO05D004246 8.8e-12 76.3 132 37.1
BcaNung04071 Brassica carinata HOM05D003639 ORTHO05D004246 9.7e-11 72.8 95 71.6
BcaC02g12785 Brassica carinata HOM05D003639 ORTHO05D004246 1.2e-08 65.9 52 69.2
QL05p082994 Quercus lobata HOM05D003639 ORTHO05D004246 7.7e-08 63.2 168 36.9
vmacro06312 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 2.9e-07 61.2 124 39.5
PRCOL_00003365 Prasinoderma coloniale HOM05D003639 ORTHO05D004246 3.8e-07 60.8 141 37.6


User provided reference genes

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