Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G144000 Carya illinoinensis HOM05D007020 ORTHO05D008935 2.3e-207 725.3 370 100.0
Haze_22697 Corylus avellana HOM05D007020 ORTHO05D008935 8.4e-149 530.8 347 80.1
QL02p012883 Quercus lobata HOM05D007020 ORTHO05D008935 7.6e-142 507.7 354 77.7
Cfa014002 Carpinus fangiana HOM05D007020 ORTHO05D008935 4.8e-128 461.8 329 75.1
TAR633G1459 Trochodendron aralioides HOM05D007020 ORTHO05D008935 1.1e-127 460.7 352 68.8
Dinv31889 Davidia involucrata HOM05D007020 ORTHO05D008935 5.3e-127 458.4 353 68.8
vmacro21850 Vaccinium macrocarpon HOM05D007020 ORTHO05D008935 1.3e-125 453.8 353 68.6
TAR376G1009 Trochodendron aralioides HOM05D007020 ORTHO05D008935 1.7e-125 453.4 353 68.3
Rhsim06G0012300 Rhododendron simsii HOM05D007020 ORTHO05D008935 6.5e-125 451.4 334 69.2
Manes.06G014100 Manihot esculenta HOM05D007020 ORTHO05D008935 2.7e-123 446.0 353 69.7
Cpa.g.sc26.268 Carica papaya HOM05D007020 ORTHO05D008935 1.8e-122 443.4 354 66.1
GSVIVG01008746001 Vitis vinifera HOM05D007020 ORTHO05D008935 7.4e-121 438.0 347 67.4
arahy.Tifrunner.gnm1.ann1.YGS75T Arachis hypogaea HOM05D007020 ORTHO05D008935 2.2e-120 436.4 356 66.0
arahy.Tifrunner.gnm1.ann1.W20NI2 Arachis hypogaea HOM05D007020 ORTHO05D008935 1.1e-119 434.1 356 65.7
Solyc04g081920.3 Solanum lycopersicum HOM05D007020 ORTHO05D008935 1.1e-119 434.1 358 65.1
Ciclev10001736m.g Citrus clementina HOM05D007020 ORTHO05D008935 2.4e-119 433.0 306 75.8
Lj4A801T43 Lonicera japonica HOM05D007020 ORTHO05D008935 4.1e-119 432.2 328 68.6
Potri.002G016800 Populus trichocarpa HOM05D007020 ORTHO05D008935 9.1e-119 431.0 351 67.8
TWI36G0910 Tripterygium wilfordii HOM05D007020 ORTHO05D008935 9.1e-119 431.0 347 66.6
PGSC0003DMG400009884 Solanum tuberosum HOM05D007020 ORTHO05D008935 2.0e-118 429.9 328 68.3
Sabra02G0013400 Salix brachista HOM05D007020 ORTHO05D008935 4.5e-118 428.7 315 72.1
Eucgr.F03712 Eucalyptus grandis HOM05D007020 ORTHO05D008935 5.9e-118 428.3 358 64.8
Atru.chr13.224 Acer truncatum HOM05D007020 ORTHO05D008935 1.0e-117 427.6 333 69.4
Nitab4.5_0003030g0130 Nicotiana tabacum HOM05D007020 ORTHO05D008935 1.7e-117 426.8 327 67.3
Thecc.08G051000 Theobroma cacao HOM05D007020 ORTHO05D008935 1.9e-116 423.3 352 65.1
PSO170G4315 Papaver somniferum HOM05D007020 ORTHO05D008935 2.5e-116 422.9 351 63.8
Duzib093G0969 Durio zibethinus HOM05D007020 ORTHO05D008935 9.4e-116 421.0 352 65.9
CAN.G311.66 Capsicum annuum HOM05D007020 ORTHO05D008935 2.1e-115 419.9 307 70.7
ClCG08G014040 Citrullus lanatus HOM05D007020 ORTHO05D008935 2.1e-115 419.9 343 66.2
Cc10_g01170 Coffea canephora HOM05D007020 ORTHO05D008935 3.6e-115 419.1 317 66.2
Carub.0002s2293 Capsella rubella HOM05D007020 ORTHO05D008935 6.1e-115 418.3 288 75.7
PGR031G0358 Punica granatum HOM05D007020 ORTHO05D008935 8.0e-115 417.9 318 68.6
Gohir.A05G183200 Gossypium hirsutum HOM05D007020 ORTHO05D008935 2.3e-114 416.4 353 64.9
Lalb_Chr08g0246281 Lupinus albus HOM05D007020 ORTHO05D008935 3.0e-114 416.0 358 64.0
THA.LOC104809629 Tarenaya hassleriana HOM05D007020 ORTHO05D008935 3.0e-114 416.0 313 69.3
Sed0026116 Sechium edule HOM05D007020 ORTHO05D008935 3.9e-114 415.6 343 66.5
Phvul.009G019500 Phaseolus vulgaris HOM05D007020 ORTHO05D008935 6.7e-114 414.8 359 64.6
Gohir.D05G186100 Gossypium hirsutum HOM05D007020 ORTHO05D008935 8.8e-114 414.5 353 64.3
Medtr3g114540 Medicago truncatula HOM05D007020 ORTHO05D008935 1.5e-113 413.7 347 65.1
MELO3C011342.2 Cucumis melo HOM05D007020 ORTHO05D008935 2.6e-113 412.9 344 66.3
Psat5g012400 Pisum sativum HOM05D007020 ORTHO05D008935 2.6e-113 412.9 348 64.9
BcaC08g47303 Brassica carinata HOM05D007020 ORTHO05D008935 4.4e-113 412.1 335 66.6
COL.COLO4_26091 Corchorus olitorius HOM05D007020 ORTHO05D008935 5.7e-113 411.8 358 64.5
TPR.G38245 Trifolium pratense HOM05D007020 ORTHO05D008935 7.4e-113 411.4 349 64.8
Aqoxy6G02012 Aquilegia oxysepala HOM05D007020 ORTHO05D008935 2.8e-112 409.5 274 74.8
CsaV3_2G024410 Cucumis sativus L. HOM05D007020 ORTHO05D008935 3.7e-112 409.1 343 65.3
CARHR069580 Cardamine hirsuta HOM05D007020 ORTHO05D008935 4.8e-112 408.7 339 65.2
Ca_15469_v3 Cicer arietinum L. HOM05D007020 ORTHO05D008935 6.3e-112 408.3 355 62.3
Peaxi162Scf00174g00717 Petunia axillaris HOM05D007020 ORTHO05D008935 6.3e-112 408.3 327 66.1
Thhalv10018588m.g Eutrema salsugineum HOM05D007020 ORTHO05D008935 8.2e-112 407.9 307 71.0
Gorai.009G191500 Gossypium raimondii HOM05D000059 ORTHO05D008935 8.2e-112 407.9 307 69.4
Glyma.04G020900 Glycine max HOM05D007020 ORTHO05D008935 1.1e-111 407.5 292 72.6
Migut.C00895 Erythranthe guttata HOM05D007020 ORTHO05D008935 2.4e-111 406.4 328 63.1
Lj1g0017386 Lotus japonicus HOM05D007020 ORTHO05D008935 2.4e-111 406.4 348 64.7
SGA_v2.0_scaffold96G28944 Striga asiatica HOM05D007020 ORTHO05D008935 2.4e-111 406.4 325 65.5
Sc26g0004460 Simmondsia chinensis HOM05D007020 ORTHO05D008935 9.1e-111 404.4 326 65.6
AT1G76050 Arabidopsis thaliana HOM05D007020 ORTHO05D008935 3.5e-110 402.5 334 65.6
AL2G36070 Arabidopsis lyrata HOM05D007020 ORTHO05D008935 1.3e-109 400.6 342 64.3
DCAR_022941 Daucus carota HOM05D007020 ORTHO05D008935 1.3e-109 400.6 333 63.7
BolC6t40035H Brassica oleracea HOM05D007020 ORTHO05D008935 2.2e-109 399.8 336 64.9
BcaC08g47097 Brassica carinata HOM05D007020 ORTHO05D008935 2.9e-109 399.4 339 62.8
A07p41540 Brassica napus HOM05D007020 ORTHO05D008935 1.9e-108 396.7 340 64.1
BraA07t31686Z Brassica rapa HOM05D007020 ORTHO05D008935 1.9e-108 396.7 340 64.1
CDE02G2299 Ceratophyllum demersum HOM05D000059 ORTHO05D008935 4.2e-108 395.6 300 69.0
VMungo1309G1583 Vigna mungo HOM05D007020 ORTHO05D008935 2.1e-107 393.3 392 58.2
C06p49960 Brassica napus HOM05D007020 ORTHO05D008935 2.7e-107 392.9 360 61.7
ATR0661G229 Amborella trichopoda HOM05D007020 ORTHO05D008935 1.0e-106 391.0 328 61.9
ECA232G4433 Erigeron canadensis HOM05D007020 ORTHO05D008935 2.3e-106 389.8 346 61.8
Aa31LG4G6160 Aethionema arabicum HOM05D000059 ORTHO05D000128 1.2e-105 387.5 378 59.5
Ah.11g040270 Amaranthus hybridus HOM05D007020 ORTHO05D008935 2.0e-105 386.7 338 62.1
HanXRQChr05g0146601 Helianthus annuus HOM05D007020 ORTHO05D008935 2.0e-105 386.7 346 60.7
Hma1.2p1_1598F.1_g292900 Hydrangea macrophylla HOM05D007020 ORTHO05D008935 7.5e-105 384.8 323 65.9
AUR62013887 Chenopodium quinoa HOM05D007020 ORTHO05D008935 1.7e-104 383.6 332 62.0
Oeu014023.1 Olea europaea HOM05D007020 ORTHO05D008935 5.4e-103 378.6 410 52.9
MBI17_g14568_MAGBIO Magnolia biondii HOM05D007020 ORTHO05D008935 5.9e-102 375.2 325 63.4
Lsat_1_v5_gn_0_761 Lactuca sativa HOM05D007020 ORTHO05D008935 4.2e-100 369.0 343 60.9
Hund05155 Selenicereus undatus HOM05D007020 ORTHO05D008935 4.2e-100 369.0 293 65.9
SalBow7G4579 Salvia bowleyana HOM05D000001 ORTHO05D009837 1.2e-99 367.5 315 61.0
Os06g0717400 Oryza sativa ssp. japonica HOM05D007020 ORTHO05D008935 3.6e-99 365.9 313 61.7
EL10Ac1g02092 Beta vulgaris HOM05D007020 ORTHO05D008935 1.8e-98 363.6 334 59.6
Sp5g31160 Schrenkiella parvula HOM05D007020 ORTHO05D008935 3.0e-98 362.8 304 65.1
SEGI_18542 Sequoiadendron giganteum HOM05D007020 ORTHO05D008935 3.1e-95 352.8 313 57.2
MSTRG.25275 Avicennia marina HOM05D000001 ORTHO05D009837 1.2e-94 350.9 286 64.3
HPP92_004932 Vanilla planifolia HOM05D007020 ORTHO05D008935 3.3e-84 316.2 243 66.3
AUR62036707 Chenopodium quinoa HOM05D007020 ORTHO05D008935 4.7e-83 312.4 257 62.6
Zm00001eb272250 Zea mays HOM05D007020 ORTHO05D008935 1.8e-82 310.5 273 59.7
Actinidia17018 Actinidia chinensis HOM05D007020 ORTHO05D008935 2.9e-80 303.1 342 53.2
Pp3c21_5880 Physcomitrium patens HOM05D007020 ORTHO05D008935 1.1e-79 301.2 329 52.0
SHI08019 Sapria himalayana HOM05D007020 ORTHO05D008935 2.7e-78 296.6 309 55.0
Sopen04g035560 Solanum pennellii HOM05D007020 ORTHO05D008935 8.6e-77 291.6 231 66.2
SGA_v2.0_scaffold173G39193 Striga asiatica HOM05D003133 ORTHO05D003642 2.5e-76 290.0 300 55.3
AagrBONN_evm.TU.Sc2ySwM_228.144 Anthoceros agrestis HOM05D007020 ORTHO05D008935 9.8e-73 278.1 283 55.1
SMO169G0131 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 1.6e-67 260.8 289 51.2
Mapoly0092s0023 Marchantia polymorpha HOM05D007020 ORTHO05D008935 2.9e-64 250.0 294 49.0
CBR_g29446 Chara braunii HOM05D007020 ORTHO05D008935 5.6e-60 235.7 390 40.0
PRCOL_00000246 Prasinoderma coloniale HOM05D007020 ORTHO05D008935 3.4e-57 226.5 296 45.6
Cre02.g078750 Chlamydomonas reinhardtii HOM05D007020 ORTHO05D008935 7.6e-57 225.3 320 42.5
Nn3g20659 Nelumbo nucifera HOM05D007020 ORTHO05D008935 3.8e-56 223.0 160 70.0
Thecc.08G050800 Theobroma cacao HOM05D007020 ORTHO05D008935 1.0e-53 214.9 232 53.0
MCO01G778 Micromonas commoda HOM05D007020 ORTHO05D008935 7.3e-52 208.8 291 40.9
CSS0023482 Camellia sinensis var. sinensis HOM05D007020 ORTHO05D008935 1.6e-46 191.0 253 48.6
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 8.4e-40 168.7 266 38.7
Glyma.06G021100 Glycine max HOM05D007020 ORTHO05D008935 1.6e-35 154.5 112 67.0
Hma1.2p1_1598F.1_g292910 Hydrangea macrophylla HOM05D007020 ORTHO05D008935 3.1e-26 123.6 79 75.9
Glyma.06G021150 Glycine max HOM05D007020 ORTHO05D008935 7.2e-23 112.5 108 57.4
SMO169G0259 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 1.9e-20 104.4 96 54.2
Actinidia15460 Actinidia chinensis HOM05D007020 ORTHO05D008935 4.5e-17 93.2 79 60.8
PRCOL_00005352 Prasinoderma coloniale HOM05D007020 ORTHO05D008935 1.2e-14 85.1 217 30.9
SMO169G0279 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 2.3e-13 80.9 124 42.7
MCO11G777 Micromonas commoda HOM05D007020 ORTHO05D008935 8.2e-11 72.4 208 33.7
AUR62036706 Chenopodium quinoa HOM05D007020 ORTHO05D000002 1.1e-10 72.0 108 43.5
PRCOL_00002894 Prasinoderma coloniale HOM05D006623 ORTHO05D008102 5.3e-10 69.7 226 26.5
Haze_22708 Corylus avellana HOM05D007020 ORTHO05D008935 5.9e-09 66.2 44 72.7
PRCOL_00004873 Prasinoderma coloniale HOM05D007020 ORTHO05D008935 3.8e-08 63.5 214 27.1
AUR62010313 Chenopodium quinoa HOM05D002827 ORTHO05D003148 1.1e-07 62.0 129 32.6
MCO04G266 Micromonas commoda HOM05D007020 ORTHO05D008102 1.1e-07 62.0 143 26.6
Pp3c1_9440 Physcomitrium patens HOM05D002827 ORTHO05D003148 4.2e-07 60.1 144 33.3
CSS0037701 Camellia sinensis var. sinensis HOM05D006791 ORTHO05D008221 7.2e-07 59.3 297 23.6
Eucgr.G02814 Eucalyptus grandis HOM05D006791 ORTHO05D008221 7.2e-07 59.3 306 23.9
ATR0589G068 Amborella trichopoda HOM05D002827 ORTHO05D003148 9.4e-07 58.9 144 29.9
Actinidia03042 Actinidia chinensis HOM05D006791 ORTHO05D008221 1.2e-06 58.5 323 22.6
Hund00152 Selenicereus undatus HOM05D002827 ORTHO05D003148 1.2e-06 58.5 129 30.2
ATR0759G009 Amborella trichopoda HOM05D006791 ORTHO05D008221 2.7e-06 57.4 304 25.3
CSS0049359 Camellia sinensis var. sinensis HOM05D006791 ORTHO05D008221 2.7e-06 57.4 304 23.0
Manes.07G103500 Manihot esculenta HOM05D006791 ORTHO05D008221 2.7e-06 57.4 302 22.8
Cfa023901 Carpinus fangiana HOM05D005705 ORTHO05D007152 3.6e-06 57.0 183 23.5
Glyma.20G178400 Glycine max HOM05D006791 ORTHO05D008221 3.6e-06 57.0 303 23.1
MD14G1151500 Malus domestica HOM05D005705 ORTHO05D007152 3.6e-06 57.0 247 26.7
PSO478G3581 Papaver somniferum HOM05D005705 ORTHO05D007152 3.6e-06 57.0 272 23.5
TAR369G0870 Trochodendron aralioides HOM05D000901 ORTHO05D008935 3.6e-06 57.0 29 86.2
Os09g0103500 Oryza sativa ssp. japonica HOM05D002827 ORTHO05D003148 4.7e-06 56.6 210 27.1
Sc08g0001370 Simmondsia chinensis HOM05D002827 ORTHO05D003148 4.7e-06 56.6 135 29.6
AUR62039074 Chenopodium quinoa HOM05D002827 ORTHO05D003148 6.1e-06 56.2 129 29.5
TAR628G0444 Trochodendron aralioides HOM05D002827 ORTHO05D003148 6.1e-06 56.2 130 30.0
PSO017G1135 Papaver somniferum HOM05D005705 ORTHO05D007152 7.9e-06 55.8 270 25.2
PSO339G2849 Papaver somniferum HOM05D006791 ORTHO05D008221 7.9e-06 55.8 303 23.4


User provided reference genes

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