Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 7.2e-195 683.7 341 100.0
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.5e-181 637.9 369 89.2
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 5.9e-173 610.9 365 87.7
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 8.0e-154 547.4 366 79.2
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.4e-150 536.6 358 78.8
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 1.6e-146 523.1 365 77.3
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 7.8e-141 504.2 362 76.2
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.6e-138 496.5 382 69.1
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 1.6e-138 496.5 364 70.6
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.1e-138 496.1 364 70.3
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 2.1e-138 496.1 363 71.3
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 3.6e-138 495.4 364 70.6
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 6.2e-138 494.6 364 71.2
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 6.2e-138 494.6 366 72.1
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.4e-137 493.4 366 69.7
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.8e-137 493.0 363 70.0
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.8e-137 493.0 363 70.8
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 3.1e-137 492.3 363 70.5
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 4.0e-137 491.9 364 70.1
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 4.0e-137 491.9 363 70.5
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 6.8e-137 491.1 364 70.1
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 1.5e-136 490.0 364 71.2
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 5.8e-136 488.0 365 69.6
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 7.5e-136 487.6 364 69.5
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 1.4e-134 483.4 365 69.9
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 1.9e-134 483.0 370 69.7
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 7.1e-134 481.1 369 69.6
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 2.1e-133 479.6 366 68.0
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 2.7e-133 479.2 365 69.3
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 7.8e-133 477.6 369 68.6
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 3.9e-132 475.3 374 66.8
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 6.6e-132 474.6 368 69.0
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 6.6e-132 474.6 361 69.5
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 8.6e-132 474.2 367 67.6
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 3.3e-131 472.2 387 64.3
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 5.6e-131 471.5 369 68.8
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 7.3e-131 471.1 365 67.4
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 2.8e-130 469.2 365 67.1
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 3.6e-130 468.8 365 66.6
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 4.7e-130 468.4 370 65.7
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 8.1e-130 467.6 365 67.4
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 8.1e-130 467.6 365 67.7
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 1.4e-129 466.8 366 67.5
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 1.8e-129 466.5 366 66.4
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 1.8e-129 466.5 366 68.6
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.2e-128 463.8 364 67.6
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 5.8e-128 461.5 364 67.3
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 2.9e-127 459.1 364 65.9
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 3.7e-127 458.8 365 66.3
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 1.4e-126 456.8 370 65.1
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 1.4e-126 456.8 364 64.8
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 1.9e-126 456.4 363 64.2
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.9e-126 456.4 365 66.8
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.9e-126 456.4 366 66.9
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 3.2e-126 455.7 365 66.8
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 4.1e-126 455.3 363 64.5
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 5.4e-126 454.9 363 64.5
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 5.4e-126 454.9 362 63.8
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.7e-125 452.6 338 68.3
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 3.5e-125 452.2 363 63.4
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 4.6e-125 451.8 364 66.2
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 7.8e-125 451.1 358 67.3
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.3e-124 449.5 364 65.9
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 3.0e-124 449.1 363 63.4
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 3.9e-124 448.7 363 66.1
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 5.1e-124 448.4 362 64.4
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 2.5e-123 446.0 362 65.5
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 3.6e-122 442.2 363 64.5
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 4.4e-120 435.3 366 62.8
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 1.3e-119 433.7 358 64.5
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.8e-119 432.2 368 63.9
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 7.1e-118 427.9 348 64.7
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 7.1e-118 427.9 359 64.3
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 2.1e-117 426.4 357 62.7
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 1.0e-116 424.1 353 63.5
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 1.3e-116 423.7 358 62.6
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 1.3e-116 423.7 309 70.2
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 1.7e-116 423.3 360 64.2
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 3.0e-116 422.5 360 63.9
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 3.9e-116 422.2 359 63.0
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 5.1e-116 421.8 363 62.5
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 2.5e-115 419.5 358 62.6
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 5.6e-115 418.3 358 62.0
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 1.3e-114 417.2 360 63.1
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.3e-114 417.2 399 58.4
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 8.1e-114 414.5 385 60.0
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.1e-113 414.1 376 61.2
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 1.7e-111 406.8 366 61.2
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 2.9e-111 406.0 367 60.8
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 9.3e-110 401.0 365 60.8
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 5.1e-108 395.2 318 65.7
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 5.6e-107 391.7 367 57.8
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 4.0e-105 385.6 354 61.0
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 3.4e-104 382.5 336 62.8
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 5.8e-104 381.7 349 60.5
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 1.4e-102 377.1 368 55.7
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 6.0e-101 371.7 378 54.5
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.3e-100 370.5 302 65.2
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 2.1e-98 363.2 352 59.1
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 4.8e-98 362.1 367 55.3
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.0e-93 345.1 376 54.3
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 6.7e-92 341.7 363 52.6
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.3e-90 337.4 341 54.8
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 2.8e-90 336.3 281 63.0
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.8e-90 336.3 384 46.1
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.2e-85 320.9 243 69.1
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.1e-81 307.8 310 53.2
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.1e-75 287.7 348 50.9
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 5.9e-72 275.4 369 42.0
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 5.5e-70 268.9 367 42.0
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.7e-66 257.3 190 72.6
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 3.1e-65 253.1 278 52.9
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 1.5e-62 244.2 403 37.5
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 1.5e-62 244.2 213 59.6
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 3.6e-61 239.6 195 63.6
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 2.6e-59 233.4 175 68.6
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 9.7e-59 231.5 168 71.4
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 2.7e-56 223.4 206 56.3
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 2.7e-56 223.4 198 59.6
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 4.5e-56 222.6 280 50.4
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.2e-53 214.5 160 67.5
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 4.8e-50 202.6 170 63.5
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 8.8e-44 181.8 199 50.3
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 5.9e-40 169.1 140 62.9
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.5e-38 163.7 95 86.3
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.1e-37 159.1 95 84.2
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 2.0e-35 154.1 298 36.6
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 5.7e-35 152.5 149 57.7
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 9.5e-30 135.2 140 54.3
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 3.6e-29 133.3 176 39.2
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.4e-28 131.3 122 63.1
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 1.4e-28 131.3 245 36.3
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 4.4e-27 126.3 133 54.1
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 4.1e-25 119.8 114 53.5
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 8.1e-21 105.5 71 71.8
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.9e-14 84.3 45 88.9
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 6.2e-13 79.3 132 37.1
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.6e-11 73.9 44 79.5
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 7.6e-11 72.4 50 68.0
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-08 64.7 133 30.8
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 8.6e-07 58.9 139 30.9


User provided reference genes

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