Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.6e-211 739.2 369 100.0
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 6.8e-199 697.2 365 96.7
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.2e-181 639.0 369 89.2
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 8.9e-175 617.1 366 86.1
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 2.2e-173 612.5 358 86.6
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 8.9e-167 590.5 365 83.8
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.8e-159 566.2 366 79.2
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 6.9e-159 564.3 382 74.9
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.5e-158 563.1 365 82.5
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 2.6e-158 562.4 365 77.8
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 7.6e-158 560.8 365 77.0
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 1.7e-157 559.7 365 77.8
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.4e-156 556.6 365 76.7
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.4e-156 555.8 365 77.0
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 4.2e-156 555.1 370 76.2
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 7.1e-156 554.3 366 76.8
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 9.3e-156 553.9 365 76.4
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 2.1e-155 552.7 366 76.0
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 4.6e-155 551.6 365 76.4
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 1.3e-154 550.1 365 76.2
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.7e-154 549.7 368 75.8
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.3e-154 549.3 365 76.2
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 5.1e-154 548.1 365 75.9
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 5.1e-154 548.1 367 76.8
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 8.7e-154 547.4 365 73.2
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.5e-153 546.6 365 75.9
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 2.5e-153 545.8 365 76.2
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 2.8e-152 542.3 369 71.3
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.1e-151 540.4 369 74.8
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 1.1e-151 540.4 376 73.4
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 2.4e-151 539.3 370 74.6
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 3.4e-150 535.4 368 73.9
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 1.3e-149 533.5 365 74.0
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 2.9e-149 532.3 365 73.4
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 2.9e-149 532.3 365 74.8
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 3.8e-149 531.9 365 74.2
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 6.4e-149 531.2 368 72.8
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 1.1e-148 530.4 386 69.2
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 1.4e-148 530.0 366 71.6
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.4e-148 530.0 369 74.0
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 2.4e-148 529.3 365 73.2
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 2.4e-148 529.3 366 74.9
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 7.1e-148 527.7 365 71.8
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 9.3e-148 527.3 360 73.6
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 3.5e-147 525.4 366 72.4
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 4.6e-147 525.0 362 73.5
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.0e-146 523.9 366 73.5
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.7e-146 521.2 337 73.9
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 6.7e-146 521.2 366 73.2
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 1.9e-145 519.6 367 72.5
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 1.3e-144 516.9 366 70.2
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 2.1e-144 516.2 365 71.5
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 3.7e-144 515.4 366 71.3
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 3.7e-144 515.4 370 71.1
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 6.2e-144 514.6 366 69.9
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.8e-143 513.1 366 72.1
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 5.3e-143 511.5 366 69.9
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 9.0e-143 510.8 366 72.1
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.2e-142 510.4 365 69.6
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 1.2e-142 510.4 366 69.4
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 2.0e-142 509.6 366 69.1
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 3.4e-142 508.8 366 69.1
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 7.6e-142 507.7 365 69.9
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 9.9e-142 507.3 359 73.0
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.2e-141 506.1 365 70.4
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 2.9e-141 505.8 365 71.0
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.4e-140 503.4 365 70.1
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 9.3e-140 500.7 366 69.9
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 1.3e-138 496.9 348 71.6
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 2.8e-136 489.2 367 66.8
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 8.2e-136 487.6 309 77.7
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 7.6e-134 481.1 365 68.5
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.8e-133 478.8 369 69.1
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 4.9e-133 478.4 365 67.7
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.5e-132 476.1 376 66.8
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 2.5e-132 476.1 367 68.9
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 7.1e-132 474.6 399 63.4
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 9.3e-132 474.2 364 67.3
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 2.1e-131 473.0 366 68.0
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 1.8e-130 469.9 365 66.6
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 2.3e-130 469.5 366 67.2
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 3.9e-130 468.8 360 67.5
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 5.1e-130 468.4 367 67.8
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 8.7e-130 467.6 367 67.6
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 2.5e-129 466.1 365 66.8
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 3.7e-128 462.2 367 66.8
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 8.2e-128 461.1 365 65.5
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 2.4e-127 459.5 392 63.5
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 3.1e-127 459.1 365 67.1
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 1.3e-125 453.8 373 64.6
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 2.9e-125 452.6 321 71.7
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 9.4e-124 447.6 335 69.0
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 6.7e-122 441.4 367 61.9
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.8e-119 433.3 302 72.5
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 5.9e-118 428.3 365 64.4
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 1.4e-114 417.2 380 58.7
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 5.1e-114 415.2 368 58.7
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 1.5e-113 413.7 369 61.5
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 7.4e-113 411.4 369 59.6
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 9.7e-113 411.0 278 74.1
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.1e-108 397.5 380 60.0
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 1.9e-108 396.7 366 59.6
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 3.0e-106 389.4 342 59.9
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 1.1e-105 387.5 364 57.4
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 5.7e-105 385.2 384 50.3
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.0e-101 374.4 246 76.8
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 2.6e-97 359.8 313 58.8
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 2.3e-85 320.1 369 45.8
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 1.2e-83 314.3 277 59.2
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 1.6e-83 313.9 366 45.1
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 7.5e-81 305.1 216 69.0
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 2.0e-78 297.0 365 50.4
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 3.6e-75 286.2 403 41.2
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.3e-72 277.7 308 52.6
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.9e-72 275.8 149 92.6
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 3.0e-69 266.5 168 79.8
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 3.0e-69 266.5 168 79.2
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 9.5e-68 261.5 214 62.6
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 2.6e-65 253.4 198 65.2
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.3e-64 251.1 196 63.8
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 2.8e-59 233.4 170 70.6
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 8.9e-58 228.4 161 71.4
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 9.6e-52 208.4 122 84.4
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.4e-50 203.8 122 82.8
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 1.7e-48 197.6 200 53.0
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 4.2e-47 193.0 166 63.9
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 1.9e-44 184.1 309 39.5
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 2.4e-42 177.2 139 66.2
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 7.6e-41 172.2 257 40.9
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.2e-40 170.6 122 73.0
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.3e-35 154.8 133 61.7
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.4e-34 150.6 176 42.0
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 3.8e-32 143.3 139 57.6
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 2.1e-30 137.5 114 58.8
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.1e-28 131.7 72 86.1
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 3.8e-24 116.7 81 71.6
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 2.5e-20 104.0 71 71.8
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.3e-20 103.2 77 64.9
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 9.6e-20 102.1 399 23.8
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 1.2e-14 85.1 402 23.6
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-14 83.6 133 33.8
Cfa025488 Carpinus fangiana HOM05D005334 ORTHO05D126475 1.6e-06 58.2 341 23.2


User provided reference genes

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