Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 5.2e-125 451.1 226 100.0
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 2.7e-89 332.4 233 74.7
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 3.5e-89 332.0 233 74.2
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 3.0e-88 328.9 226 75.2
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 3.9e-88 328.6 236 74.6
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 1.1e-87 327.0 204 79.9
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 1.6e-86 323.2 232 72.4
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 1.1e-85 320.5 231 71.9
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 2.6e-84 315.8 229 72.1
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.6e-84 315.8 231 72.3
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 2.6e-84 315.8 231 71.9
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 3.4e-84 315.5 232 72.8
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 5.8e-84 314.7 232 71.1
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 7.6e-84 314.3 232 72.8
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 9.9e-84 313.9 232 71.1
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 3.8e-83 312.0 232 72.0
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.9e-83 311.6 232 71.1
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 4.9e-83 311.6 233 72.1
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 8.4e-83 310.8 232 70.7
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.1e-82 310.5 233 72.5
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 9.3e-82 307.4 232 69.4
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.2e-81 307.0 232 71.6
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.6e-81 306.6 232 71.1
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 2.1e-81 306.2 232 69.8
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.5e-81 305.4 232 69.4
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 6.0e-81 304.7 231 69.7
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 1.0e-80 303.9 232 65.9
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 1.3e-80 303.5 232 66.4
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 2.3e-80 302.8 236 69.9
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.0e-80 302.4 232 69.0
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 5.1e-80 301.6 237 69.6
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 6.6e-80 301.2 232 66.8
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.5e-79 300.1 231 68.8
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 1.9e-79 299.7 232 65.5
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 3.3e-79 298.9 228 68.9
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 3.3e-79 298.9 228 68.9
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 4.3e-79 298.5 237 69.2
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 1.3e-78 297.0 232 67.2
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 9.0e-77 290.8 232 67.2
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 9.0e-77 290.8 231 67.1
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 9.0e-77 290.8 231 66.2
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 5.8e-76 288.1 231 66.2
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.3e-75 287.0 231 66.7
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 1.7e-75 286.6 229 67.2
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.2e-75 286.2 206 72.3
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 2.9e-75 285.8 231 66.2
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 4.9e-75 285.0 232 65.9
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.9e-74 283.1 228 67.1
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 1.9e-74 283.1 231 68.0
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 2.4e-74 282.7 232 64.7
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 3.2e-74 282.3 232 65.9
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 5.4e-74 281.6 229 66.4
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 9.3e-74 280.8 231 66.2
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 6.0e-73 278.1 227 63.0
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 1.0e-72 277.3 238 61.8
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 6.6e-72 274.6 231 62.3
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 1.5e-71 273.5 231 61.9
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.9e-71 273.1 227 63.0
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.9e-71 273.1 234 64.5
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 1.9e-71 273.1 224 62.9
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 3.3e-71 272.3 235 63.8
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 7.3e-71 271.2 238 60.5
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 3.6e-70 268.9 237 60.8
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 3.6e-70 268.9 233 61.4
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 4.8e-70 268.5 243 60.9
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 8.1e-70 267.7 272 56.2
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 1.8e-69 266.5 239 59.8
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 1.8e-69 266.5 235 60.4
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 4.0e-69 265.4 229 63.3
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 6.9e-69 264.6 235 60.9
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 1.2e-68 263.8 227 60.4
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 1.2e-68 263.8 241 58.9
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 2.6e-68 262.7 239 59.4
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 2.6e-68 262.7 206 67.0
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 7.6e-68 261.2 239 59.0
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 2.2e-67 259.6 232 61.6
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 3.8e-67 258.8 239 58.6
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.9e-66 256.5 266 54.5
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 7.1e-66 254.6 232 61.2
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.6e-65 253.4 213 65.3
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 2.1e-65 253.1 210 60.0
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 2.1e-65 253.1 224 62.1
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.8e-64 250.0 210 62.4
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.9e-63 246.5 189 65.6
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 2.1e-62 243.0 187 66.8
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 2.8e-62 242.7 232 58.2
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 2.8e-62 242.7 205 62.0
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 1.4e-61 240.4 229 59.0
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 5.3e-61 238.4 232 59.5
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.3e-59 233.8 162 69.8
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 4.2e-58 228.8 224 56.2
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 2.7e-57 226.1 215 59.5
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 6.0e-57 224.9 231 58.4
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 1.0e-56 224.2 179 69.3
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.3e-56 223.8 229 57.6
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 5.1e-56 221.9 230 57.0
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.5e-55 220.3 179 69.3
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.1e-54 216.5 231 56.7
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 8.2e-54 214.5 214 58.9
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 3.1e-53 212.6 122 82.8
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 4.5e-52 208.8 269 48.7
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 2.2e-51 206.5 198 57.1
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 1.6e-49 200.3 232 50.4
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 7.9e-49 198.0 206 53.4
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.9e-47 193.4 220 54.5
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 2.2e-46 189.9 255 47.5
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 8.2e-46 188.0 234 51.3
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 3.1e-45 186.0 129 66.7
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 6.9e-45 184.9 96 84.4
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 2.0e-44 183.3 188 54.3
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.0e-43 181.0 215 49.3
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 2.2e-43 179.9 171 62.6
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 2.2e-43 179.9 216 46.8
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 1.6e-41 173.7 252 44.0
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 2.7e-41 172.9 180 58.9
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 5.7e-39 165.2 189 55.0
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 2.2e-38 163.3 201 48.3
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 1.2e-28 131.0 102 65.7
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 2.1e-25 120.2 70 84.3
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 2.1e-25 120.2 131 51.9
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 1.0e-24 117.9 175 45.7
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.0e-23 113.6 57 87.7
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 1.0e-19 101.3 67 62.7
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 4.2e-18 95.9 49 87.8
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 1.6e-17 94.0 69 63.8
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 8.8e-16 88.2 50 70.0
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.7e-14 84.0 52 76.9
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.4e-13 80.1 71 66.2
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 2.4e-13 80.1 48 79.2
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 4.1e-13 79.3 58 69.0
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.4e-13 79.0 48 79.2
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 7.0e-13 78.6 48 79.2
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.6e-12 77.4 48 77.1
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 1.6e-12 77.4 68 60.3
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.5e-11 72.0 71 54.9
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.5e-10 70.1 75 50.7
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 2.3e-08 63.5 42 69.0
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 4.0e-08 62.8 29 93.1
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.0e-07 60.5 91 46.2
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.7e-07 58.9 80 46.2


User provided reference genes

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