Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 0.0e+00 1183.3 597 100.0
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.1e-259 899.8 587 77.0
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.0e-249 866.7 596 75.8
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 3.0e-249 865.1 596 75.7
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.2e-245 853.2 717 63.6
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 2.1e-205 719.5 598 62.5
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 7.8e-205 717.6 601 62.1
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.3e-203 712.2 597 61.0
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 2.0e-200 703.0 598 61.2
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 9.9e-200 700.7 602 60.6
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 5.4e-198 694.9 599 59.8
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.9e-195 686.4 618 58.6
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 3.1e-193 679.1 592 59.8
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 5.3e-193 678.3 592 58.8
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 6.9e-193 677.9 597 59.3
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.6e-189 666.8 599 57.9
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 4.6e-189 665.2 603 58.5
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 4.8e-186 655.2 601 58.7
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 6.2e-186 654.8 592 58.1
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.4e-185 653.7 623 56.7
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.8e-185 653.3 601 57.7
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 3.1e-185 652.5 593 58.5
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.0e-185 652.1 623 56.7
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 2.6e-184 649.4 597 59.0
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 9.3e-182 641.0 582 57.2
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 7.9e-181 637.9 608 58.1
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 3.9e-180 635.6 602 55.3
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.9e-179 633.3 611 55.3
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.3e-178 630.6 623 55.9
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.3e-178 630.6 623 55.9
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.6e-178 630.2 608 56.6
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 4.8e-178 628.6 607 56.0
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 6.3e-178 628.2 610 56.9
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.6e-176 622.9 599 56.4
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 7.6e-176 621.3 603 56.1
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 8.5e-175 617.8 566 60.1
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.9e-174 616.7 537 62.4
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 4.2e-174 615.5 607 54.2
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.2e-173 614.0 608 55.8
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.1e-173 613.2 609 54.4
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.1e-173 613.2 609 54.4
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 2.7e-173 612.8 578 55.7
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 1.0e-172 610.9 608 55.4
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 1.7e-170 603.6 610 54.6
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 2.8e-170 602.8 600 55.2
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 8.2e-170 601.3 590 53.7
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 3.1e-169 599.4 591 53.6
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 2.5e-166 589.7 571 58.7
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 6.1e-165 585.1 607 52.6
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.3e-162 577.4 610 53.0
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 8.5e-159 564.7 575 54.8
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.2e-158 562.8 585 52.8
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 3.9e-156 555.8 594 50.3
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 8.8e-156 554.7 596 50.3
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 3.3e-155 552.7 599 50.4
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.4e-153 547.4 581 51.3
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 5.3e-153 545.4 600 49.8
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 9.1e-153 544.7 575 51.5
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.0e-152 543.5 597 50.9
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.7e-151 540.4 610 50.3
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 5.0e-151 538.9 583 50.6
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.5e-150 537.3 603 48.3
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 3.2e-150 536.2 594 49.2
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 7.2e-150 535.0 585 48.7
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.3e-148 530.0 604 47.5
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 9.7e-147 524.6 579 49.6
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 4.8e-146 522.3 598 47.5
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 6.3e-146 521.9 597 48.1
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.8e-145 520.4 654 47.7
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.7e-144 516.5 581 48.7
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 4.2e-142 509.2 581 48.4
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 9.4e-142 508.1 581 48.2
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.2e-141 507.7 587 47.7
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.1e-141 506.9 586 49.8
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.7e-141 506.5 594 47.1
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.0e-140 504.6 586 47.6
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 6.8e-140 501.9 619 46.7
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.3e-138 497.7 580 48.6
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.8e-137 493.8 590 47.1
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 4.1e-137 492.7 566 48.6
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 4.1e-137 492.7 590 45.6
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 7.7e-136 488.4 476 57.4
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.0e-135 488.0 514 52.7
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.5e-134 484.2 605 45.5
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.9e-134 483.8 579 47.0
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 2.6e-131 473.4 393 62.1
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 3.4e-131 473.0 590 46.6
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 2.2e-130 470.3 393 61.6
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.8e-129 467.2 581 46.8
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 7.0e-129 465.3 584 44.9
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 7.0e-129 465.3 597 44.1
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.2e-128 464.5 614 43.6
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.7e-125 452.6 584 45.2
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.2e-124 449.1 581 46.1
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.2e-122 443.7 443 55.3
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 8.3e-122 441.8 581 43.9
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.7e-120 436.8 582 45.2
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 3.9e-119 433.0 560 42.5
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 4.3e-118 429.5 544 46.9
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 5.8e-115 419.1 599 41.9
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 4.1e-113 412.9 599 41.4
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 7.0e-113 412.1 599 41.6
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.0e-111 408.3 280 69.6
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 2.3e-111 407.1 599 41.7
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 2.3e-111 407.1 599 41.4
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 3.9e-111 406.4 599 41.1
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 4.0e-108 396.4 591 40.8
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.8e-107 392.5 572 42.1
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 3.7e-106 389.8 284 63.7
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.9e-105 387.5 364 58.5
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 6.0e-104 382.5 567 40.7
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.3e-103 381.3 512 44.5
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.6e-101 374.4 579 39.7
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 6.8e-100 369.0 567 39.7
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.9e-98 363.6 346 54.9
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.8e-98 363.2 570 38.8
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 5.4e-97 359.4 595 38.3
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 3.1e-92 343.6 605 37.4
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 9.3e-89 332.0 309 55.7
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.8e-82 310.1 562 36.8
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.4e-81 307.4 380 43.9
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.3e-78 296.6 397 44.8
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 3.3e-70 270.4 606 34.5
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 2.2e-66 257.7 586 31.7
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.8e-63 248.1 405 39.8
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.4e-57 228.4 653 28.2
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 3.2e-57 227.3 164 63.4
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 2.8e-53 214.2 142 67.6
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.9e-52 209.5 613 26.4
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.9e-49 201.4 237 47.3
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.1e-48 198.0 123 74.8
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 9.7e-46 189.1 123 73.2
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.0e-38 164.9 505 29.5
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.1e-36 159.1 516 27.1
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.5e-33 146.7 570 24.6
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.4e-30 137.1 102 62.7
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.3e-29 135.6 106 61.3
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.0e-27 128.3 112 58.0
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.1e-25 122.5 130 44.6
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 8.0e-24 116.3 344 29.1
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.3e-21 109.0 138 39.9
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 4.2e-17 94.0 57 70.2
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 2.8e-16 91.3 73 60.3
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 4.7e-16 90.5 68 70.6
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.0e-15 87.8 181 28.7
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 4.0e-15 87.4 67 70.1
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.7e-13 80.9 132 40.9
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 6.3e-13 80.1 93 45.2
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.2e-11 75.9 244 28.3
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 1.6e-11 75.5 76 50.0
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 3.5e-11 74.3 260 25.8
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.9e-11 73.6 138 29.0
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.9e-10 71.2 65 60.0
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.5e-09 68.9 56 51.8
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 3.6e-08 64.3 113 31.0
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 4.0e-07 60.8 116 34.5


User provided reference genes

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