Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1335.1 708 100.0
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1261.1 708 92.5
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1256.5 708 92.5
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1227.6 698 91.7
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1213.0 709 89.0
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1212.6 708 89.0
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1209.1 708 89.1
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1207.2 708 87.7
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1204.1 708 88.4
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1203.3 708 87.9
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1199.5 711 88.5
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1196.0 708 87.4
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1190.6 708 87.0
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1190.3 708 87.0
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1189.5 708 87.0
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1187.6 708 86.7
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1187.2 697 87.9
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1186.8 709 87.0
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1186.4 708 87.1
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1185.2 704 88.2
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1184.1 708 87.0
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1182.9 708 86.9
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1179.1 701 87.6
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1177.5 708 86.4
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1173.3 697 87.4
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1172.5 688 88.4
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1170.6 702 85.6
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 708 85.7
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1167.9 709 86.7
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1167.1 708 85.6
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 708 87.0
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 708 85.5
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 708 85.5
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 726 85.1
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 708 87.0
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 719 84.3
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 697 86.4
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1156.7 708 86.4
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 708 85.3
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 708 85.3
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 708 85.3
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 709 86.7
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1152.1 713 85.1
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1151.7 736 81.7
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1151.3 710 86.5
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1151.3 708 86.0
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 709 85.3
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1148.3 702 83.8
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 731 82.5
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 714 84.5
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1143.3 671 88.2
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 708 83.2
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 694 85.4
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 694 85.6
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1138.3 706 82.2
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1138.3 735 81.9
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1137.9 708 81.9
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 702 82.9
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 705 82.1
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 705 82.1
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 705 82.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 705 82.1
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1134.8 708 81.8
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 685 85.7
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 709 83.1
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1131.3 705 81.8
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1130.9 708 81.4
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1130.9 685 85.5
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1130.2 694 83.9
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 725 81.2
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1129.4 706 82.0
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1128.6 689 85.3
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1127.5 708 84.2
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1125.5 693 83.3
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1124.4 691 83.4
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 708 82.5
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 694 82.9
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1114.0 691 82.8
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1113.2 708 80.5
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1112.4 696 83.0
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 703 81.7
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1111.3 708 80.8
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1109.4 696 81.8
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1103.6 690 82.8
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1103.2 740 78.0
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1102.8 692 82.1
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1100.5 686 83.4
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1098.2 668 84.4
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1094.7 769 76.5
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1078.5 703 78.9
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1075.5 720 78.8
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 4.8e-312 1074.7 696 78.7
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 4.8e-312 1074.3 750 75.6
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 5.8e-311 1070.5 682 80.6
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.0e-308 1062.0 740 76.5
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 8.7e-304 1046.6 666 82.1
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.1e-301 1039.6 690 77.5
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 3.8e-299 1031.2 716 75.7
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 5.9e-292 1007.3 744 70.7
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 7.7e-284 980.3 683 78.3
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.1e-282 976.5 591 84.8
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.7e-281 971.8 631 81.8
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 6.1e-281 970.7 614 81.3
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.6e-273 944.9 689 69.7
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.6e-273 944.9 689 69.7
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.2e-270 935.6 584 81.5
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 2.1e-265 919.1 700 65.9
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 4.9e-262 907.9 691 67.4
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 4.1e-261 904.8 700 66.6
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.3e-259 899.0 554 83.6
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.9e-259 898.7 589 79.6
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 6.1e-257 891.0 566 79.0
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 3.5e-252 875.2 518 87.6
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 4.0e-248 861.7 675 69.6
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.0e-239 832.8 489 88.1
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.3e-219 766.9 681 57.6
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 1.6e-209 733.4 675 55.4
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 4.0e-200 702.2 423 83.7
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.7e-198 696.8 470 80.6
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 3.6e-148 529.6 748 42.6
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 6.1e-148 528.9 328 79.6
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 8.0e-140 501.9 755 38.3
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.7e-135 486.9 280 88.2
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.5e-130 471.1 269 90.3
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 9.5e-125 451.8 273 83.2
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 2.6e-114 417.2 359 59.6
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.3e-110 404.1 233 86.3
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 2.3e-110 404.1 253 80.6
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 8.6e-110 402.1 744 35.3
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.6e-108 396.7 237 84.8
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.3e-102 378.3 249 80.7
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.3e-102 378.3 261 77.8
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.3e-80 302.4 181 82.3
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 4.3e-77 293.5 215 71.6
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.6e-76 291.6 193 82.9
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.9e-70 270.4 148 88.5
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.2e-66 258.8 195 70.3
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 7.4e-61 239.6 192 71.9
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-58 232.3 155 66.5
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.5e-56 224.6 167 71.3
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 1.6e-55 221.9 156 73.1
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 2.0e-53 214.9 223 58.7
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 5.3e-51 206.8 180 67.8
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 7.2e-48 196.4 489 29.0
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.1e-43 181.0 107 90.7
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.5e-42 177.6 114 82.5
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 5.9e-42 176.8 104 84.6
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.5e-40 172.2 122 73.8
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.0e-38 166.0 111 75.7
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.6e-29 134.8 136 57.4
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 2.2e-28 131.7 73 90.4
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.8e-28 131.3 100 70.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.8e-27 128.6 100 68.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.8e-27 128.6 100 68.0
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.7e-26 124.8 92 72.8
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.0e-25 122.9 127 54.3
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.5e-24 118.2 81 76.5
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.1e-19 102.8 69 69.6
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.1e-19 102.8 57 86.0
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.8e-19 102.1 63 77.8
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.3e-17 95.9 77 64.9
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.3e-17 95.9 59 79.7
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.1e-16 92.8 61 80.3
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.5e-16 92.4 93 58.1
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 4.7e-15 87.4 65 72.3
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.5e-13 82.4 61 70.5
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 7.5e-13 80.1 78 55.1
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 6.4e-12 77.0 40 97.5
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.2e-10 72.8 64 62.5
FAN25G2786 Fragaria x ananassa HOM05D004330 ORTHO05D206697 8.9e-06 56.6 52 57.7


User provided reference genes

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