Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 3.3e-124 448.4 223 100.0
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 5.3e-114 414.5 223 90.6
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.1e-110 402.5 222 86.9
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 3.7e-107 391.7 260 76.5
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 3.7e-107 391.7 260 76.5
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 4.1e-106 388.3 219 84.9
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 9.1e-106 387.1 223 83.0
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 5.9e-105 384.4 223 83.4
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 1.1e-103 380.2 223 79.8
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.5e-103 379.0 215 83.3
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.5e-103 379.0 215 83.3
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.2e-103 378.6 215 81.9
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 7.2e-103 377.5 224 79.5
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.2e-102 376.7 223 81.2
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 2.7e-102 375.6 223 80.7
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 3.6e-102 375.2 223 79.4
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 3.6e-102 375.2 218 81.7
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 3.6e-102 375.2 218 80.3
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 3.6e-102 375.2 223 79.8
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 6.1e-102 374.4 223 79.4
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 3.0e-101 372.1 224 82.1
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 8.8e-101 370.5 223 78.9
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.5e-100 369.8 215 80.9
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 2.0e-100 369.4 219 79.0
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 2.6e-100 369.0 225 80.0
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.4e-100 368.2 222 77.9
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.3e-99 366.7 223 79.8
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.3e-99 366.7 217 80.6
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 2.2e-99 365.9 215 80.0
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.8e-99 364.8 224 77.7
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.1e-98 363.6 224 77.2
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.4e-98 363.2 224 77.2
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.8e-98 362.8 223 75.3
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 4.1e-98 361.7 238 76.9
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 9.1e-98 360.5 224 76.8
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.2e-97 360.1 223 77.6
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 2.0e-97 359.4 223 77.6
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 3.5e-97 358.6 251 72.5
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 5.0e-96 354.8 218 77.5
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 5.0e-96 354.8 223 72.6
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 6.5e-96 354.4 223 71.7
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 1.1e-95 353.6 219 75.8
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 1.5e-95 353.2 220 78.2
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.9e-95 352.8 218 75.7
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 3.2e-95 352.1 214 73.8
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 4.2e-95 351.7 220 75.5
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.1e-94 349.4 218 76.1
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 2.7e-94 349.0 218 75.7
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 6.1e-94 347.8 218 76.1
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 6.1e-94 347.8 223 78.5
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 8.0e-94 347.4 223 73.1
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 2.3e-93 345.9 223 73.1
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.3e-93 345.9 225 74.2
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.3e-93 345.9 223 72.6
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 4.0e-93 345.1 218 75.7
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 5.2e-93 344.7 215 77.2
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.6e-92 342.4 223 74.0
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 3.3e-92 342.0 221 73.3
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 9.7e-92 340.5 220 73.6
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.7e-91 339.7 223 72.2
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 8.2e-91 337.4 218 72.5
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.6e-89 333.2 218 72.0
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 7.7e-89 330.9 215 70.7
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.0e-88 330.5 217 71.9
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.0e-88 330.5 217 71.9
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.0e-88 330.5 265 62.3
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.3e-88 330.1 215 74.4
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 2.9e-88 328.9 218 69.7
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 5.0e-88 328.2 217 71.4
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 2.5e-87 325.9 215 68.8
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 4.2e-87 325.1 215 70.7
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.2e-86 323.6 239 66.5
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.7e-86 322.4 252 63.5
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 3.6e-86 322.0 219 66.7
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.1e-86 321.2 221 65.2
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.8e-85 319.7 202 72.3
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 2.3e-85 319.3 217 67.7
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 3.0e-85 318.9 217 68.2
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 6.8e-85 317.8 212 71.2
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 8.8e-85 317.4 223 65.5
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 8.8e-85 317.4 218 66.5
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.5e-84 316.6 215 66.5
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 1.5e-84 316.6 215 66.5
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.5e-84 316.6 215 66.5
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.5e-84 316.6 215 67.0
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 4.4e-84 315.1 215 66.5
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 7.5e-84 314.3 217 66.8
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.3e-83 313.5 210 70.5
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 4.8e-83 311.6 216 67.6
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 8.3e-83 310.8 215 65.1
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.4e-82 309.3 216 65.3
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 1.6e-81 306.6 215 65.1
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 2.0e-81 306.2 215 64.7
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 3.5e-81 305.4 218 68.3
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 5.9e-81 304.7 217 64.5
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 2.2e-80 302.8 202 67.3
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.2e-79 298.9 215 62.3
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.0e-77 292.4 180 75.6
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 6.8e-77 291.2 218 65.6
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 3.4e-76 288.9 167 85.0
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 5.7e-76 288.1 215 60.5
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.8e-76 287.3 216 61.1
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.3e-75 284.3 215 61.4
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.7e-72 276.6 218 61.9
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 9.5e-71 270.8 225 55.1
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 2.8e-70 269.2 219 55.3
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 4.7e-70 268.5 165 77.6
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.0e-68 263.1 167 74.9
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.0e-68 263.1 167 74.9
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.4e-68 262.3 166 75.3
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 5.7e-68 261.5 171 73.1
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.9e-67 259.2 224 60.3
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 2.9e-67 259.2 219 52.1
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.7e-65 252.7 185 63.2
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.6e-65 251.9 215 56.3
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.3e-64 250.4 186 67.2
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.6e-64 247.7 189 60.8
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.4e-61 240.4 213 48.8
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.4e-61 240.4 136 83.8
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.8e-61 240.0 141 78.7
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 5.2e-61 238.4 210 51.0
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.8e-61 238.0 221 53.4
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.8e-60 234.2 214 52.8
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.1e-58 230.7 169 63.3
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 2.7e-57 226.1 165 65.5
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 4.6e-57 225.3 142 74.6
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.0e-56 224.2 159 65.4
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 1.7e-56 223.4 211 49.8
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.6e-54 216.9 208 45.7
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.1e-53 214.2 151 68.2
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 9.8e-52 207.6 171 56.7
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 6.4e-51 204.9 127 78.0
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 8.3e-51 204.5 211 46.4
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.1e-50 201.4 143 65.0
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 3.0e-48 196.1 191 48.2
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.0e-48 196.1 203 48.8
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 4.3e-47 192.2 146 61.6
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 9.5e-47 191.0 220 39.5
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-46 189.9 163 54.6
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 5.8e-44 181.8 166 56.0
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 6.4e-43 178.3 128 71.1
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.8e-41 171.4 131 59.5
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.2e-38 164.1 123 61.0
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.7e-38 162.2 133 57.1
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-36 156.8 134 53.7
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.8e-35 152.5 117 59.8
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.3e-30 137.5 101 61.4
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 8.7e-24 114.8 91 60.4
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 5.6e-23 112.1 83 71.1
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-22 110.2 143 44.8
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 3.6e-22 109.4 77 63.6
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 3.8e-19 99.4 52 80.8
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.1e-18 97.8 66 65.2
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 3.2e-18 96.3 81 50.6
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.8e-16 90.5 52 71.2
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.6e-15 85.5 68 63.2
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.7e-14 82.8 106 42.5
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 3.8e-11 72.8 97 44.3
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 1.1e-10 71.2 162 29.6
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 2.5e-10 70.1 55 63.6
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 2.5e-10 70.1 55 63.6
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 4.2e-10 69.3 54 64.8


User provided reference genes

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