Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1363.2 706 100.0
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1279.6 708 93.2
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1260.0 708 92.5
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1246.1 697 92.1
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1239.9 708 89.7
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1238.4 708 90.0
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1235.3 709 89.7
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1234.9 708 90.1
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1231.5 708 89.0
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1229.5 708 89.1
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1225.3 711 89.0
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1221.5 708 88.3
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1218.8 704 88.1
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1216.4 700 88.6
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1216.4 704 87.9
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1215.7 706 88.1
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1213.4 706 88.2
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1213.0 698 89.4
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1211.1 708 88.1
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1211.1 708 87.7
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1210.7 708 88.0
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1207.2 709 87.4
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1206.8 708 87.4
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1202.2 688 89.4
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1201.4 697 88.7
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1198.3 706 87.3
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1197.6 701 87.9
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1194.9 706 86.8
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1193.7 706 86.7
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1193.3 706 86.7
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1192.2 697 87.7
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1191.0 707 87.3
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1188.7 708 85.7
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1181.8 685 87.9
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1181.8 685 87.9
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1181.8 685 87.9
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1179.5 733 84.0
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1179.1 708 85.5
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1178.3 713 86.3
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1174.5 736 82.6
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1171.8 719 84.3
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1170.2 694 86.5
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1169.8 707 85.6
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1169.1 714 85.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 671 88.7
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 706 84.0
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1164.8 694 86.2
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1161.7 708 85.2
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1159.8 706 84.8
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1159.4 697 84.4
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 685 86.7
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 726 83.3
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 685 86.3
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 707 85.1
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1154.0 706 85.3
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 689 86.4
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 685 86.1
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 694 84.4
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1151.7 731 82.2
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 708 84.9
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1149.8 709 83.2
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1148.3 695 83.6
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1148.3 695 83.6
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1148.3 695 83.6
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 695 83.7
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 699 85.7
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 723 81.5
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1144.0 693 83.5
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 695 83.5
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 695 83.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 695 83.3
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 695 83.3
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1143.3 688 84.0
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 696 83.5
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1139.8 695 83.0
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 697 83.4
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1133.6 708 81.8
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 691 83.1
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 694 82.4
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1129.4 708 81.2
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1125.9 696 82.3
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 695 82.3
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1119.0 689 82.6
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 740 77.7
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1115.9 692 81.8
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1115.5 668 84.3
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1114.4 769 77.1
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1111.3 686 82.9
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1105.5 696 81.2
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 718 79.4
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1095.9 696 79.6
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1091.3 737 77.3
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1089.7 682 81.5
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1085.9 708 79.0
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 9.7e-312 1073.2 740 75.9
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.4e-308 1061.2 666 82.1
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 3.2e-306 1054.7 690 78.1
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 5.1e-304 1047.3 728 75.0
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 5.5e-298 1027.3 741 71.9
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.4e-288 996.1 631 80.7
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 4.5e-284 981.1 683 77.5
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.0e-283 979.9 631 81.5
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.7e-281 971.8 591 83.2
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 8.8e-280 966.8 707 68.5
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 8.8e-280 966.8 707 68.5
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.3e-272 942.2 584 81.8
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 3.0e-272 941.8 700 67.3
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.6e-268 929.5 691 68.5
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.0e-267 926.8 700 67.7
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 7.0e-261 904.0 589 79.6
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 2.5e-258 895.6 518 88.6
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.2e-258 895.2 554 82.5
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.6e-257 892.9 566 79.2
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.7e-251 872.8 675 70.1
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.5e-244 848.6 489 88.8
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 9.5e-226 787.3 681 58.7
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 6.8e-216 754.6 675 56.3
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.8e-206 722.2 468 82.5
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 7.6e-199 698.0 423 82.3
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 6.3e-153 545.4 757 42.9
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 8.5e-150 535.0 328 79.6
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 7.0e-144 515.4 755 38.5
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 5.6e-133 479.2 280 85.4
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 2.0e-130 470.7 269 89.6
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 9.5e-125 451.8 273 82.8
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 3.5e-119 433.3 359 61.8
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 9.8e-114 415.2 744 35.6
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.1e-109 401.7 261 82.8
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.5e-109 401.4 237 84.8
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.5e-109 401.4 253 79.1
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.5e-109 400.6 233 84.5
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.4e-106 390.2 249 82.7
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.2e-80 303.5 182 80.8
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 2.1e-76 291.2 192 82.8
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.2e-74 285.4 215 69.3
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.2e-72 276.9 148 89.9
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.8e-67 261.5 195 70.3
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 7.4e-61 239.6 192 71.4
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 3.4e-58 230.7 155 64.5
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.4e-56 225.3 223 60.1
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 3.2e-56 224.2 156 73.1
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.1e-55 221.5 167 70.7
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 2.7e-55 221.1 180 70.0
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.9e-48 198.4 489 29.0
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.9e-48 198.4 114 89.5
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.6e-47 195.3 122 82.0
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 5.3e-43 180.3 111 87.4
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 1.5e-40 172.2 104 82.7
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.3e-38 164.9 111 73.9
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.3e-30 138.3 100 72.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.5e-29 135.6 100 70.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.5e-29 135.6 100 70.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 2.6e-29 134.8 73 91.8
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 7.5e-29 133.3 151 53.6
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.8e-28 130.6 90 76.7
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.5e-24 119.0 81 75.3
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.0e-22 112.8 114 57.0
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 2.2e-20 105.1 63 79.4
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 4.9e-20 104.0 68 72.1
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.8e-19 102.1 59 86.4
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.0e-19 100.1 57 82.5
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 9.2e-19 99.8 77 66.2
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.6e-18 99.0 59 81.4
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.0e-18 98.6 92 60.9
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 8.9e-14 83.2 59 72.9
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.2e-13 82.8 65 67.7
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 2.2e-12 78.6 43 76.7
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.1e-11 76.3 64 62.5
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 7.0e-11 73.6 61 68.9
FAN25G2786 Fragaria x ananassa HOM05D004330 ORTHO05D206697 6.8e-06 57.0 52 57.7


User provided reference genes

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