Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 2.1e-66 255.4 115 100.0
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 2.3e-65 251.9 115 97.4
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 8.9e-65 250.0 115 96.5
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 8.9e-65 250.0 115 97.4
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 8.9e-65 250.0 115 96.5
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 8.9e-65 250.0 114 96.5
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 8.9e-65 250.0 115 96.5
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 2.0e-64 248.8 115 95.7
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 2.0e-64 248.8 115 96.5
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 2.0e-64 248.8 115 96.5
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.0e-64 248.8 115 95.7
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 3.4e-64 248.1 115 96.5
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 3.4e-64 248.1 115 94.8
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 4.4e-64 247.7 115 94.8
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 7.6e-64 246.9 115 93.9
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 7.6e-64 246.9 115 94.8
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 7.6e-64 246.9 115 94.8
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 9.9e-64 246.5 115 95.7
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 94.8
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 94.8
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 94.8
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 94.8
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 1.7e-63 245.7 115 94.8
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 94.8
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 94.8
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.9
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 4.9e-63 244.2 115 93.0
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 6.4e-63 243.8 115 94.8
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 94.8
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 93.9
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 93.9
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.0
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 1.4e-62 242.7 115 93.0
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 1.4e-62 242.7 115 94.8
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 92.2
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 93.0
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 92.2
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 93.0
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 93.0
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 93.9
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 92.2
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 93.0
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 93.0
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 93.0
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 91.3
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 93.0
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 92.2
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 93.9
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 91.3
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 93.9
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 93.0
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 9.2e-62 240.0 115 91.3
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 9.2e-62 240.0 115 91.3
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 9.2e-62 240.0 115 91.3
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 90.4
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 2.7e-61 238.4 115 91.3
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 90.4
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 91.3
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 4.6e-61 237.7 114 89.5
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 91.3
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 89.6
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 89.6
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 89.6
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 89.6
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 89.6
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 88.7
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 88.7
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 88.7
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 89.6
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 88.7
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 3.9e-60 234.6 135 81.5
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 90.4
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 88.7
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 87.8
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.0
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.0
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.0
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.0
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.0
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 88.7
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 87.8
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 87.0
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 87.0
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 9.6e-59 229.9 134 79.9
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 85.2
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 4.7e-58 227.6 112 91.1
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 4.7e-58 227.6 112 91.1
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 85.2
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 87.0
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 87.0
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 2.0e-56 222.2 115 81.7
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 5.8e-56 220.7 115 86.1
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 9.9e-56 219.9 105 92.4
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 9.9e-56 219.9 105 92.4
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 4.9e-55 217.6 105 90.5
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.4e-54 214.2 115 80.0
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 9.3e-54 213.4 113 81.4
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 9.3e-54 213.4 113 81.4
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 1.2e-53 213.0 105 87.6
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 2.1e-53 212.2 112 83.9
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 2.7e-53 211.8 114 79.8
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 6.0e-53 210.7 105 86.7
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 1.0e-52 209.9 105 85.7
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.3e-52 209.5 105 87.6
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 1.7e-52 209.1 128 77.3
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 2.5e-51 205.3 115 74.8
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 4.3e-51 204.5 115 77.4
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 9.6e-51 203.4 98 94.9
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 9.6e-51 203.4 115 76.5
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 1.6e-50 202.6 112 76.8
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 2.1e-50 202.2 112 76.8
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 2.1e-50 202.2 112 76.8
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 4.8e-50 201.1 115 73.9
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 3.1e-49 198.4 114 72.8
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 2.6e-48 195.3 130 69.2
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.6e-48 195.3 114 71.9
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 8.4e-47 190.3 115 70.4
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.4e-46 189.5 114 70.2
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.1e-45 185.7 115 69.6
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 7.9e-45 183.7 88 94.3
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 2.3e-44 182.2 180 53.9
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.9e-43 179.1 93 87.1
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 7.3e-43 177.2 88 92.0
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 3.6e-42 174.9 115 71.3
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 6.2e-42 174.1 80 96.2
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 2.4e-41 172.2 88 88.6
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 5.3e-41 171.0 114 68.4
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 5.3e-41 171.0 90 85.6
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 9.0e-41 170.2 80 93.8
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 2.0e-40 169.1 84 90.5
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.6e-40 168.7 115 58.3
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 5.8e-40 167.5 80 91.2
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.7e-39 166.0 82 89.0
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 3.8e-39 164.9 79 89.9
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 1.9e-38 162.5 81 85.2
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 7.1e-38 160.6 94 77.7
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 2.7e-37 158.7 80 83.8
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.3e-36 156.4 84 83.3
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 1.3e-36 156.4 80 83.8
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 3.9e-36 154.8 81 81.5
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 1.1e-35 153.3 81 82.7
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 7.4e-35 150.6 77 87.0
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 5.3e-33 144.4 110 58.2
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 4.6e-29 131.3 111 51.4
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 6.3e-26 120.9 64 84.4
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 3.1e-25 118.6 61 82.0
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 6.5e-23 110.9 56 87.5
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 6.5e-23 110.9 97 50.5
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 7.2e-22 107.5 114 45.6
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 1.2e-21 106.7 113 46.9
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 6.1e-21 104.4 71 64.8
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 1.5e-19 99.8 54 81.5
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 2.2e-18 95.9 113 44.2
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 3.7e-18 95.1 49 81.6
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 1.4e-17 93.2 70 65.7
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 9.0e-17 90.5 117 38.5
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 1.5e-16 89.7 74 50.0
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.0e-12 77.0 104 39.4
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 4.3e-11 71.6 105 35.2
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.4e-09 66.6 40 72.5
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 4.1e-09 65.1 112 33.0
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 3.4e-08 62.0 113 26.5
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 3.4e-08 62.0 112 27.7
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 7.7e-08 60.8 112 33.0
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 7.7e-08 60.8 112 29.5
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 1.7e-07 59.7 113 29.2
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 3.8e-07 58.5 115 28.7
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 1.1e-06 57.0 88 35.2
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 2.5e-06 55.8 113 29.2
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 3.2e-06 55.5 116 28.4
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 9.4e-06 53.9 112 25.0


User provided reference genes

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