Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 0.0e+00 1474.9 717 100.0
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 5.3e-147 525.8 658 43.5
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 4.4e-146 522.7 658 43.5
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 2.9e-145 520.0 658 43.3
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 1.1e-144 518.1 656 43.0
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 2.4e-144 516.9 658 42.9
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 1.2e-143 514.6 658 42.9
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.6e-143 514.2 649 43.1
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 4.6e-143 512.7 677 42.4
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 7.8e-143 511.9 682 40.9
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 1.0e-142 511.5 677 42.2
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 3.9e-142 509.6 677 42.1
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 6.6e-142 508.8 659 42.2
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.1e-141 508.1 669 41.6
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 4.3e-141 506.1 661 41.8
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 4.3e-141 506.1 659 42.9
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 7.3e-141 505.4 665 41.8
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 9.6e-141 505.0 661 43.1
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 2.1e-140 503.8 659 41.6
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 2.1e-140 503.8 662 42.3
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 6.2e-140 502.3 662 41.5
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 8.1e-140 501.9 677 41.8
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 1.8e-139 500.7 655 41.7
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 1.8e-139 500.7 650 42.0
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 3.1e-139 500.0 648 42.0
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 1.2e-138 498.0 662 41.4
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.5e-138 497.7 677 40.9
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 2.0e-138 497.3 662 41.8
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 2.6e-138 496.9 666 42.0
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 4.5e-138 496.1 658 42.2
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 7.6e-138 495.4 660 42.1
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 2.9e-137 493.4 663 41.6
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 4.9e-137 492.7 663 42.1
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 4.9e-137 492.7 662 40.3
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 1.1e-136 491.5 652 41.7
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 1.4e-136 491.1 673 40.7
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.4e-136 491.1 672 40.8
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.9e-136 490.7 681 40.7
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 2.4e-136 490.3 664 42.2
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 4.2e-136 489.6 663 39.1
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 4.2e-136 489.6 660 40.9
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 5.4e-136 489.2 660 39.8
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 7.1e-136 488.8 649 41.0
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 7.1e-136 488.8 690 39.9
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 9.3e-136 488.4 687 41.2
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 1.2e-135 488.0 684 39.5
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 1.2e-135 488.0 663 40.4
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 1.6e-135 487.6 694 40.9
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 1.6e-135 487.6 678 40.3
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 1.6e-135 487.6 660 41.8
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 4.6e-135 486.1 694 40.9
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 4.6e-135 486.1 684 39.3
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.0e-134 485.0 668 40.9
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 8.7e-134 481.9 665 41.4
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 8.7e-134 481.9 659 41.0
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 1.5e-133 481.1 659 40.1
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 1.9e-133 480.7 665 41.7
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 3.3e-133 479.9 651 41.0
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 3.3e-133 479.9 652 40.0
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 3.3e-133 479.9 662 41.4
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 4.3e-133 479.6 661 40.8
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 4.3e-133 479.6 661 40.8
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 4.3e-133 479.6 661 40.8
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 5.6e-133 479.2 655 40.8
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 9.6e-133 478.4 699 39.8
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 2.1e-132 477.2 687 39.6
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 3.7e-132 476.5 676 40.4
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 8.1e-132 475.3 680 41.5
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 3.1e-131 473.4 663 40.1
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 2.0e-130 470.7 661 40.5
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 2.6e-130 470.3 661 40.5
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 2.6e-130 470.3 661 40.4
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 5.8e-130 469.2 661 40.5
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 5.8e-130 469.2 661 40.4
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.3e-129 468.0 661 39.5
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 2.2e-129 467.2 681 39.1
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.2e-129 467.2 681 39.1
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 4.9e-129 466.1 665 40.0
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 4.9e-129 466.1 648 39.5
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 6.4e-129 465.7 687 38.7
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 1.1e-128 464.9 649 39.3
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.9e-128 464.2 661 39.5
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 4.2e-128 463.0 673 39.2
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 9.3e-128 461.8 651 40.1
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.0e-126 458.4 651 38.4
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 3.0e-126 456.8 649 40.2
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.9e-125 454.1 662 39.6
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.9e-125 454.1 595 41.8
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 5.7e-125 452.6 640 40.8
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 5.7e-125 452.6 660 39.8
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 7.4e-125 452.2 663 39.1
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 3.7e-124 449.9 662 39.0
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 5.3e-123 446.0 658 40.4
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.2e-122 444.9 670 38.7
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 2.0e-122 444.1 650 40.5
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 5.8e-122 442.6 636 40.1
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.7e-121 441.0 681 38.0
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.7e-121 441.0 670 38.2
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 8.4e-121 438.7 575 42.4
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 3.2e-120 436.8 733 36.4
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 4.2e-120 436.4 608 40.5
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.0e-118 431.8 653 39.5
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 6.3e-116 422.5 721 35.6
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 5.3e-115 419.5 725 35.7
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 1.2e-114 418.3 593 40.3
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 3.4e-114 416.8 676 37.3
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.9e-113 413.7 660 36.4
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 1.4e-112 411.4 681 35.8
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 3.6e-111 406.8 659 36.4
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 6.1e-111 406.0 695 34.7
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.8e-110 404.4 653 36.6
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 8.8e-110 402.1 589 39.9
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 2.0e-109 401.0 578 39.4
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.8e-108 397.1 658 36.3
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 1.3e-105 388.3 747 33.6
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 1.7e-105 387.9 643 36.4
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 3.0e-94 350.5 643 33.3
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 3.3e-93 347.1 693 32.5
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.3e-92 345.1 572 37.8
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.0e-87 325.9 563 35.7
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.0e-85 321.2 660 31.7
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 7.5e-85 319.3 660 32.4
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 1.3e-81 308.5 468 39.3
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 6.1e-79 299.7 485 37.1
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 6.1e-79 299.7 469 37.7
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 4.0e-78 297.0 476 37.8
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 1.3e-76 292.0 659 29.9
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 4.9e-76 290.0 660 29.8
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 7.0e-75 286.2 373 40.8
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 1.2e-71 275.4 452 35.2
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.1e-71 274.6 474 37.1
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.8e-70 271.6 460 35.9
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.2e-69 268.9 475 35.2
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.4e-69 267.3 460 35.2
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.2e-61 242.3 355 39.2
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 5.8e-61 240.0 347 38.9
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.2e-52 211.5 184 53.3
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.9e-52 210.3 184 52.2
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 3.2e-51 207.6 189 50.8
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 2.1e-50 204.9 191 50.8
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.0e-49 202.6 182 52.2
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 9.5e-48 196.1 416 31.0
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.7e-44 185.3 167 47.9
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 1.4e-43 182.2 194 46.4
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 5.6e-40 170.2 450 29.6
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.6e-39 168.7 185 43.8
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 4.7e-39 167.2 154 46.8
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.6e-37 161.4 176 46.6
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.3e-33 148.3 134 50.0
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 1.2e-29 136.0 147 44.2
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 2.2e-28 131.7 257 32.7
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 1.1e-24 119.4 114 49.1
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 4.3e-24 117.5 165 38.2
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.8e-23 114.8 101 48.5
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 1.1e-19 102.8 112 44.6
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 6.0e-18 97.1 84 50.0
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.8e-17 95.5 78 55.1
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.7e-10 71.6 100 37.0
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 1.0e-09 69.7 73 46.6
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 1.8e-09 68.9 66 50.0
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.5e-08 65.9 75 44.0
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 1.3e-07 62.8 143 31.5
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 8.2e-07 60.1 335 23.9


User provided reference genes

Program Settings